Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Linderina_20pennispora_20[genbank_20GCA_5F002104995.1_202017-04-20] 227 sequences; 26,202,545 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq217 187 4e-43 seq145 187 4e-43 >seq217 Length=908848 Score = 187 bits (206), Expect = 4e-43 Identities = 200/262 (76%), Gaps = 2/262 (1%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| |||||||| |||| ||| |||||| ||||||||||| || ||||||||||| || | Sbjct 707300 CGCCAAGCGTCACCGCAAGAT-TCTTCGCGATAACATCCAGGGCATCACCAAGCCGGCCA 707242 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 ||||||||||||| || |||||||| ||||||||| |||| || | |||| || |||| Sbjct 707241 TCCGTCGTCTGGCGCGCCGTGGTGGTGTCAAGCGTATCTCGGGCCTCATCTACGAGGAGA 707182 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 || | ||| | ||| | ||||| ||| ||| |||| || || || ||| |||| Sbjct 707181 CCCGCGGTGTGCTCAAGGTGTTCCTTGAGAACGTCATCCGCGACGCCGTCACCTACACCG 707122 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 ||||||| || || ||||| |||||||| |||| ||||||| || | || || || | Sbjct 707121 AGCACGCCAAGCGCAAGACCGTCACCTCGCTGGACGTCGTCTACGCGCTCAAGCGCCAGG 707062 Query 16671 GCCGTAAGATTTATGGTTTTGG 16692 |||||| | ||||| || || Sbjct 707061 GCCGTACCCTCTATGGCTTCGG 707040 Score = 181 bits (200), Expect = 2e-41 Identities = 199/262 (76%), Gaps = 2/262 (1%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| |||||||| |||| ||| |||||| ||||||||||| || ||||||||||| || | Sbjct 727196 CGCCAAGCGTCACCGCAAGAT-TCTTCGCGATAACATCCAGGGCATCACCAAGCCGGCCA 727254 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||| |||||||| || |||||||| ||||||||| |||| || | |||| || |||| Sbjct 727255 TCCGCCGTCTGGCGCGCCGTGGTGGTGTCAAGCGTATCTCGGGCCTCATCTACGAGGAGA 727314 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 || | ||| | ||| | ||||| ||| ||| |||| || || || ||| |||| Sbjct 727315 CCCGCGGTGTGCTCAAGGTGTTCCTTGAGAACGTCATCCGCGACGCCGTCACCTACACCG 727374 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 ||||||| || || ||||| |||||||| |||| ||||||| || | || || || | Sbjct 727375 AGCACGCCAAGCGCAAGACCGTCACCTCGCTGGACGTCGTCTACGCGCTCAAGCGCCAGG 727434 Query 16671 GCCGTAAGATTTATGGTTTTGG 16692 |||||| | ||||| || || Sbjct 727435 GCCGTACCCTCTATGGCTTCGG 727456 >seq145 Length=96172 Score = 187 bits (206), Expect = 4e-43 Identities = 200/262 (76%), Gaps = 2/262 (1%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| |||||||| |||| ||| |||||| ||||||||||| || ||||||||||| || | Sbjct 746 CGCCAAGCGTCACCGCAAGAT-TCTTCGCGATAACATCCAGGGCATCACCAAGCCGGCCA 804 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 ||||||||||||| || |||||||| ||||||||| |||| || | |||| || |||| Sbjct 805 TCCGTCGTCTGGCGCGCCGTGGTGGTGTCAAGCGTATCTCGGGCCTCATCTACGAGGAGA 864 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 || | ||| | ||| | ||||| ||| ||| |||| || || || ||| |||| Sbjct 865 CCCGCGGTGTGCTCAAGGTGTTCCTTGAGAACGTCATCCGCGACGCCGTCACCTACACCG 924 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 ||||||| || || ||||| |||||||| |||| ||||||| || | || || || | Sbjct 925 AGCACGCCAAGCGCAAGACCGTCACCTCGCTGGACGTCGTCTACGCGCTCAAGCGCCAGG 984 Query 16671 GCCGTAAGATTTATGGTTTTGG 16692 |||||| | ||||| || || Sbjct 985 GCCGTACCCTCTATGGCTTCGG 1006 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79074992452311