Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Linderina_20pennispora_20[genbank_20GCA_5F002104995.1_202017-04-20] 227 sequences; 26,202,545 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq2 104 2e-17 seq151 96.9 3e-15 seq153 95.1 1e-14 seq155 89.7 4e-13 seq1 89.7 4e-13 >seq2 Length=801100 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| ||||| || |||||||| || ||||||||||| | | ||| | ||||| Sbjct 378256 AGCACCAAGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCGTCC 378197 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG 16843 || | || ||||| || | || || ||||| ||||| || | |||||| ||||| Sbjct 378196 TCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCC 378137 Query 16844 GCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTT 16903 ||| | |||||| || | | | | ||||| | |||| || | |||||| || Sbjct 378136 TGAATCTTCTGCTTGACGTTGTCGATGGTGTCCGACGACTCCACCTCGAGGGTGATAGTC 378077 Query 16904 TTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || ||||| || || || |||||||||||||| Sbjct 378076 TTGCCGGTGAGGGTCTTCACAAAAATCTGCAT 378045 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| ||||| || |||||||| || ||||||||||| | | ||| | ||||| Sbjct 378484 AGCACCAAGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCGTCC 378425 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG 16843 || | || ||||| || | || || ||||| ||||| || | |||||| ||||| Sbjct 378424 TCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCC 378365 Query 16844 GCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTT 16903 ||| | |||||| || | | | | ||||| | |||| || | ||||||||| Sbjct 378364 TGAATCTTCTGCTTGACGTTGTCGATGGTGTCCGACGACTCCACCTCGAGGGTGATGGTC 378305 Query 16904 TTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || ||||| || || || || ||||||||||| Sbjct 378304 TTGCCGGTGAGGGTCTTCACGAAAATCTGCAT 378273 Score = 98.7 bits (108), Expect = 8e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| ||||| || |||||||| || ||||||||||| | | ||| | ||||| Sbjct 378712 AGCACCAGGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCGTCC 378653 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG 16843 || | || ||||| || | || || ||||| ||||| || | |||||| ||||| Sbjct 378652 TCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCC 378593 Query 16844 GCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTT 16903 ||| | |||||| || | | | | ||||| | |||| || | |||||| || Sbjct 378592 TGAATCTTCTGCTTGACGTTGTCGATGGTGTCCGACGACTCCACCTCGAGGGTGATAGTC 378533 Query 16904 TTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || ||||| || || || || ||||||||||| Sbjct 378532 TTGCCGGTGAGGGTCTTCACGAAAATCTGCAT 378501 >seq151 Length=1709611 Score = 96.9 bits (106), Expect = 3e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 ||||| || |||||||| || ||||||||||| | | ||| | ||||||| | || Sbjct 449760 TGCAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCGTCCTCGAGCTGC 449701 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCGGCAATTTGC 16852 ||||| || | || || ||||| ||||| || | |||||| ||||| || | | Sbjct 449700 TTGCCGGCGAAGATGAGGCGCTGCTGGTCAGGGGGAATGCCCTCCTTGTCCTGGATCTTC 449641 Query 16853 TGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGGTC 16912 ||||| || | | | | ||||| | |||| || | ||||||||| || || || Sbjct 449640 TGCTTGACGTTGTCGATGGTGTCCGACGACTCCACCTCAAGGGTGATGGTCTTGCCCGTA 449581 Query 16913 AGCGTTTTGACAAAAATCTGCAT 16935 || || ||||| ||||||||||| Sbjct 449580 AGGGTCTTGACGAAAATCTGCAT 449558 >seq153 Length=77323 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| ||||| || |||||||| || ||||||||||| | | ||| | | ||| Sbjct 48263 AGCACCAGGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCATCC 48204 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG 16843 || | || ||||| || | || || ||||| ||||| || | ||| || ||||| Sbjct 48203 TCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCC 48144 Query 16844 GCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTT 16903 ||| | |||||| || | | | | ||||| | |||| || | |||||| || Sbjct 48143 TGAATCTTCTGCTTGACGTTGTCGATGGTGTCCGACGACTCCACCTCAAGGGTGATAGTC 48084 Query 16904 TTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || ||||| || || || |||||||||||||| Sbjct 48083 TTGCCGGTGAGGGTCTTCACAAAAATCTGCAT 48052 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| ||||| || |||||||| || ||||||||||| | | || | ||||| Sbjct 48719 AGCACCAGGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGAGTGCGGCCGTCC 48660 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG 16843 || | || ||||| || | || || ||||| ||||| || | ||| || ||||| Sbjct 48659 TCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCC 48600 Query 16844 GCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTT 16903 ||| | |||||| || | | | | ||||| | |||| || | |||||| || Sbjct 48599 TGAATCTTCTGCTTGACGTTGTCAATGGTGTCCGACGACTCCACCTCGAGGGTGATAGTC 48540 Query 16904 TTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || ||||| || || || || ||||||||||| Sbjct 48539 TTGCCGGTGAGGGTCTTCACGAAAATCTGCAT 48508 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| ||||| || |||||||| || ||||||||||| | | ||| | ||||| Sbjct 48491 AGCACCAGGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCGTCC 48432 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG 16843 || | || ||||| || | || || ||||| ||||| || | ||| || ||||| Sbjct 48431 TCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCC 48372 Query 16844 GCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTT 16903 ||| | |||||| || | | | | || || | |||| || | |||||| || Sbjct 48371 TGAATCTTCTGCTTGACGTTGTCGATGGTATCCGACGACTCCACCTCGAGGGTGATAGTC 48312 Query 16904 TTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || || || || || || || ||||||||||| Sbjct 48311 TTGCCAGTGAGGGTCTTCACGAAAATCTGCAT 48280 >seq155 Length=76293 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| || || || |||||||| || ||||||||||| | | ||| | ||||| Sbjct 26917 AGCACCAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCGTCC 26858 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG 16843 || | || ||||| || | || || ||||| ||||| || | ||||| ||||| Sbjct 26857 TCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCAGGGGGGATACCCTCCTTGTCC 26798 Query 16844 GCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTT 16903 || | |||||| || | | | |||||| | |||| || | ||||||||| Sbjct 26797 TGGATCTTCTGCTTAACGTTATCGATGGTGTCGGAAGACTCCACCTCGAGGGTGATGGTC 26738 Query 16904 TTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || || ||||| || || || ||||||||||| Sbjct 26737 TTGCCCGTCAGGGTCTTAACGAAAATCTGCAT 26706 >seq1 Length=3302357 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| || || || |||||||| || ||||||||||| | | ||| | ||||| Sbjct 872071 AGCACCAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCGTCC 872012 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG 16843 || | || ||||| || | || || ||||| ||||| || | ||||| ||||| Sbjct 872011 TCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCAGGGGGGATACCCTCCTTGTCC 871952 Query 16844 GCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTT 16903 || | |||||| || | | | |||||| | |||| || | ||||||||| Sbjct 871951 TGGATCTTCTGCTTAACGTTATCGATGGTGTCGGAAGACTCCACCTCGAGGGTGATGGTC 871892 Query 16904 TTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || || ||||| || || || ||||||||||| Sbjct 871891 TTGCCCGTCAGGGTCTTAACGAAAATCTGCAT 871860 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405086879298730