Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Linderina_20pennispora_20[genbank_20GCA_5F002104995.1_202017-04-20] 227 sequences; 26,202,545 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq138 127 1e-24 seq1 114 9e-21 >seq138 Length=10184 Score = 127 bits (140), Expect = 1e-24 Identities = 85/95 (89%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||||||||||| ||||| || |||||||| Sbjct 9382 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAAGTAGGGACAGTGGGAATCTCGT 9323 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||||||||||||||||||||||||| Sbjct 9322 TGATCCATTCATGCGCGTCACTAATTAGATGACGA 9288 Score = 102 bits (112), Expect = 5e-17 Identities = 70/78 (90%), Gaps = 2/78 (3%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGG--TCTC 20004 |||||||| || ||| |||||||||||||||||||||||||||||||||||||| |||| Sbjct 7242 CTCTCTCTCCAGAGTACTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCTC 7183 Query 20005 GCGGTAATATTTAGCCTT 20022 || ||||||||||||| Sbjct 7182 GCCTGAATATTTAGCCTT 7165 >seq1 Length=3302357 Score = 114 bits (126), Expect = 9e-21 Identities = 210/303 (69%), Gaps = 6/303 (2%) Strand=Plus/Plus Query 6194 GGACGCGTTCTACCGCTACAAAATGCCGCGCATCTGC--GCCAAGGTCGAGGGTAAGGGA 6251 |||| |||||||||||||||| ||||| | |||| | |||| | ||||| ||||| Sbjct 1785182 GGACTCGTTCTACCGCTACAAGATGCCCA--AGCTGCAGGGCAAGATTGAGGGCAAGGGC 1785239 Query 6252 AACGGTATTAAAACCGTCATTGTCAACATGCCTGAAGTCGCTAAGGCGCTCGGACGCCCT 6311 ||||| || || || || | |||||| | || || || || ||| ||||| Sbjct 1785240 AACGGCATCAAGACAGTGCTGCCCAACATTGCCGAGGTGGCCCGTGCTCTCTCGCGCCCG 1785299 Query 6312 GCCACCTACCCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTGATCAC 6371 | | |||||||| || || || || |||| || ||||| ||| || | || | Sbjct 1785300 CCGGCATACCCGACCAAGTACTTTGGCGGCGAGCTGGGCGCGCAGGTCAAGATCGAGGAG 1785359 Query 6372 AAAAACGAGCGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTT 6431 || ||||| || | ||| || ||||| |||| || ||||||||||||| | || Sbjct 1785360 AAGAACGACCGGTACATTGTCAACGGTGCGCACGACGTCAACAAGCTGCAGGACCTGCTC 1785419 Query 6432 GACGGCTTTATTCGCAAGTTTGTGCTGTGTCGGGAA-TGCGATAACCCGGAGACCGAGCT 6490 ||||| || ||| ||| |||||||| ||| || ||| | ||||||||||| || || Sbjct 1785420 GACGGGTTCATTGAGCGGTTCGTGCTGTG-CGGCAACTGCAAGAACCCGGAGACTGACCT 1785478 Query 6491 TAT 6493 || Sbjct 1785479 GAT 1785481 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334946273347637