Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Linderina_20pennispora_20[genbank_20GCA_5F002104995.1_202017-04-20] 227 sequences; 26,202,545 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq217 114 2e-20 seq162 100 4e-16 >seq217 Length=908848 Score = 114 bits (126), Expect = 2e-20 Identities = 301/457 (66%), Gaps = 7/457 (2%) Strand=Plus/Plus Query 32652 AACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAA 32711 |||| || || || || || ||| || |||||||| | | || | ||||| || Sbjct 400052 AACAGCACGCAGGCAAAGTCCGTGTGCAGGCCCTCGTCGCGGCAGATCAGCTCGTTCGAG 400111 Query 32712 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCA 32771 || || ||||| ||||| ||||| ||||| || ||||| || || |||||||| || || Sbjct 400112 AAGGTCAGTCCAGGCATCAGGCCGCGCTTCTTGAGCCAGAAGATCGACGCAAACGAGCCC 400171 Query 32772 GAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGC---G 32828 || ||||| || || || || ||||||||||| | || | | | || | ||| | Sbjct 400172 GAGAAGAAGATGCCCTCGACCGCCGCAAAGGCCACCAGGCGCACGCCGAACTTGGCCTCG 400231 Query 32829 CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCT 32888 | || || ||||| | ||||| ||||||||||| | || || || | || Sbjct 400232 CGGTTATCGATCCAGCGAAGCGCCCAGTCGGCCTTCTTGCGGATGCACGGGATGTTGTCG 400291 Query 32889 ATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGA 32948 ||||| | || | | ||| || || || | || || ||||| | || Sbjct 400292 ATAGCGTGGAACAAAAAGTCGCGCTCCTTGGGGTCGCGGATGTACGTGTCAATGAGCAGC 400351 Query 32949 CTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCC 33008 ||| | ||||| || ||||| ||||| ||| || || |||||||| | | ||| Sbjct 400352 GAGTACGTCTCCGAGTGGATGTTCTCAATCATCATCTGGAAGCCGTAGAACGACCGCGCC 400411 Query 33009 TCGGTAATCTGTACTTCTGTACAAAATCGTTCTG--CTAAATTTTCATTCACTATTCCGT 33066 |||| ||||| || || || | ||| |||||| | | || || || || || |||| Sbjct 400412 TCGGGGATCTGAACCTCGGTGCTAAA--GTTCTGCACCAGGTTCTCGTTGACGATGCCGT 400469 Query 33067 CACTGGCTGCAAAAAACGCCAATACATGTTTTATAAA 33103 | ||| ||||| ||||| | || | || ||||| Sbjct 400470 CCGAGGCAGCAAAGAACGCGAGCACGTACTTGATAAA 400506 >seq162 Length=1352108 Score = 100 bits (110), Expect = 4e-16 Identities = 390/608 (64%), Gaps = 4/608 (1%) Strand=Plus/Plus Query 62993 TCGAACTCGTCTCCCCAAACATTGTCCAGTCCAGGACATTCATCCGGACACATCAACGAC 63052 || ||||| || ||||| || | | || || || || | ||| || | || |||| Sbjct 1303775 TCAAACTCATCGCCCCACACCTCCTGCATGCCGGGTGCCTCGTGCGGGCAGAACAGCGAC 1303834 Query 63053 CACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AA 63111 |||| ||| | | | || || ||||| || ||||| || ||||| || || ||| || Sbjct 1303835 CACTTGCCGCCGGCAATGACGCGCTTCATGAACAGATCCGGGATCCACAGCGC-ATAGAA 1303893 Query 63112 TAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCAT 63171 || || | || | ||||| || || ||||| ||||| |||||||| | Sbjct 1303894 CAGGTCGCGGGCCCGCACCTCCTCCTTGCCGTGGTTCTTGCGCAGATCCAGGAACGCAAA 1303953 Query 63172 AATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCC 63231 | ||| | ||||||||| |||| || || || | | || ||||| ||||| || || Sbjct 1303954 CACATCGGCATGCCACGGCTCCAGATAGATCGCAAACGCACCTGGCCGCTTGTTGCCGCC 1304013 Query 63232 CTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGA 63291 ||| || | ||| | || ||||| || | || | || ||| || | || || || || Sbjct 1304014 CTGGTCGACGTACCGCGCCGTGTTGTTGAACACACGCAGCATCGGCACAAGCCCGTTCGA 1304073 Query 63292 TGTACCATTGGT-CCCTGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGAC 63350 || || ||||| ||||| || || || | || || || || || | || | Sbjct 1304074 CGTGCCGTTGGTGCCCTGCAATGTATGAGCCCGTAGCCCGGATGTTGCTCACGTGCAGCC 1304133 Query 63351 CTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCT 63410 | || || || || | || || || ||||| || | ||| || |||||||||| Sbjct 1304134 CAATGCCGCCAGCGTTCTTGGAAATCTGCGCGCACACCTTCAGCGTGTCGTAGATGCCCT 1304193 Query 63411 CTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTG-GTGACGACTAGTT 63469 | || || |||||| |||| | || || || || | || | |||| || Sbjct 1304194 CGATGCTGTCATCCGACATGGCCACAAGGAAGCACGACGAGAGCTGCGGGACGCGGCGTG 1304253 Query 63470 CCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTGTAC 63529 |||| || || | || || || ||||| || || | ||| || | || |||||| Sbjct 1304254 CCCGAGTTGAACAGCGTCGGCGACGCGTGCGTGAAGAACTTTGACGACATGAGGTTGTAC 1304313 Query 63530 GTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATG 63589 ||||| || || | ||| || ||| | || || || | | || ||||| | || | Sbjct 1304314 GTCTCGATCGCCGCGTCAATGTCCGAGCCGTGGATGCCCAGGGACACGCGCATCACCAGG 1304373 Query 63590 TGCTGAGG 63597 ||||| || Sbjct 1304374 TGCTGCGG 1304381 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633630202069200