Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Linderina_20pennispora_20[genbank_20GCA_5F002104995.1_202017-04-20] 227 sequences; 26,202,545 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq2 100 2e-16 seq153 98.7 9e-16 seq151 95.1 1e-14 >seq2 Length=801100 Score = 100 bits (110), Expect = 2e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 24996 ACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCG 25055 || ||||| || ||||| ||||| | ||||| || | ||||| |||| ||||||||| Sbjct 378042 ACCATGCAGATTTTTGTGAAGACCCTCACCGGCAAGACTATCACCCTCGAGGTGGAGTCG 378101 Query 25056 TCTGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 || ||||| ||||| | ||||| || || ||||| || || || || |||||| Sbjct 378102 TCGGACACCATCGACAACGTCAAGCAGAAGATTCAGGACAAGGAGGGCATCCCGCCTGAC 378161 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || ||||| | || || |||||||| || | || || | ||||| | || ||| Sbjct 378162 CAGCAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTCTCGGACTAC 378221 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || || || || || || || || ||||| Sbjct 378222 AACATCCAGAAGGAGTCGACTCTGCACTTGGTGCT 378256 Score = 98.7 bits (108), Expect = 9e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| | ||||| || ||||||| |||| ||||||||||| Sbjct 378273 ATGCAGATTTTCGTGAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTGGAGTCGTCG 378332 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| ||||| | ||||| || || ||||| || || || || |||||||| Sbjct 378333 GACACCATCGACAACGTCAAGCAGAAGATTCAGGACAAGGAGGGCATCCCGCCTGACCAG 378392 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || || |||||||| || | || || | ||||| | || ||||| Sbjct 378393 CAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTCTCGGACTACAAC 378452 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || || || || || || || ||||| Sbjct 378453 ATCCAGAAGGAGTCGACTCTGCACTTGGTGCT 378484 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| | ||||| || | ||||| |||| ||||||||||| Sbjct 378501 ATGCAGATTTTCGTGAAGACCCTCACCGGCAAGACTATCACCCTCGAGGTGGAGTCGTCG 378560 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| ||||| | ||||| || || ||||| || || || || |||||||| Sbjct 378561 GACACCATCGACAACGTCAAGCAGAAGATTCAGGACAAGGAGGGCATCCCGCCTGACCAG 378620 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || || |||||||| || | || || | ||||| | || ||||| Sbjct 378621 CAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTCTCGGACTACAAC 378680 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || || || || || || | ||||| Sbjct 378681 ATCCAGAAGGAGTCGACTCTGCACCTGGTGCT 378712 >seq153 Length=77323 Score = 98.7 bits (108), Expect = 9e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| | ||||| || | ||||| | || ||||||||||| Sbjct 48052 ATGCAGATTTTTGTGAAGACCCTCACCGGCAAGACTATCACCCTTGAGGTGGAGTCGTCG 48111 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| ||||| | ||||| || || ||||| ||||| || || |||||||| Sbjct 48112 GACACCATCGACAACGTCAAGCAGAAGATTCAGGACAAGGAAGGCATCCCGCCTGACCAG 48171 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || || |||||||| || | || |||| ||||| | || ||||| Sbjct 48172 CAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGCACCCTCTCGGACTACAAC 48231 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || || || || || || | ||||| Sbjct 48232 ATCCAGAAGGAGTCGACTCTGCACCTGGTGCT 48263 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| | ||||| || | ||||| |||| ||||||||||| Sbjct 48508 ATGCAGATTTTCGTGAAGACCCTCACCGGCAAGACTATCACCCTCGAGGTGGAGTCGTCG 48567 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || || | ||||| || || ||||| ||||| || || |||||||| Sbjct 48568 GACACCATTGACAACGTCAAGCAGAAGATTCAGGACAAGGAAGGCATCCCGCCTGACCAG 48627 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || || |||||||| || | || || | |||||| | || ||||| Sbjct 48628 CAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACTCTCTCGGACTACAAC 48687 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || || || || || || | ||||| Sbjct 48688 ATCCAGAAGGAGTCGACTCTGCACCTGGTGCT 48719 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| | || || || | ||||| |||| ||||||||||| Sbjct 48280 ATGCAGATTTTCGTGAAGACCCTCACTGGCAAGACTATCACCCTCGAGGTGGAGTCGTCG 48339 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 || || ||||| | ||||| || || ||||| ||||| || || |||||||| Sbjct 48340 GATACCATCGACAACGTCAAGCAGAAGATTCAGGACAAGGAAGGCATCCCGCCTGACCAG 48399 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || || |||||||| || | || || | ||||| | || ||||| Sbjct 48400 CAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTCTCGGACTACAAC 48459 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || || || || || || | ||||| Sbjct 48460 ATCCAGAAGGAGTCGACTCTGCACCTGGTGCT 48491 >seq151 Length=1709611 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| | || || || ||||||| | || ||||||||||| Sbjct 449558 ATGCAGATTTTCGTCAAGACCCTTACGGGCAAGACCATCACCCTTGAGGTGGAGTCGTCG 449617 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| ||||| | ||||| || ||| ||||| || || ||||| |||||||| Sbjct 449618 GACACCATCGACAACGTCAAGCAGAAGATCCAGGACAAGGAGGGCATTCCCCCTGACCAG 449677 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || || |||||||| || | || || | ||||| | || ||||| Sbjct 449678 CAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTTTCGGACTACAAC 449737 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || || || || || || | ||||| Sbjct 449738 ATCCAGAAGGAGTCGACCCTGCACCTCGTGCT 449769 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433326801171005