Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Linderina_20pennispora_20[genbank_20GCA_5F002104995.1_202017-04-20] 227 sequences; 26,202,545 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq2 123 2e-23 seq151 109 5e-19 seq155 107 2e-18 seq1 107 2e-18 >seq2 Length=801100 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| |||||||| || || | ||||| || || |||| || || ||||| | | Sbjct 378045 ATGCAGATTTTTGTGAAGACCCTCACCGGCAAGACTATCACCCTCGAGGTGGAGTCGTCG 378104 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | ||| | |||| || || ||||| ||||||||||| || || || || || Sbjct 378105 GACACCATCGACAACGTCAAGCAGAAGATTCAGGACAAGGAGGGCATCCCGCCTGACCAG 378164 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || || |||||||| ||| | ||||| ||||||| |||| || |||||| Sbjct 378165 CAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTCTCGGACTACAAC 378224 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || || || || || || | || || || | || ||||||| ||| Sbjct 378225 ATCCAGAAGGAGTCGACTCTGCACTTGGTGCTTCGCCTGCGCGGTGGT 378272 Score = 118 bits (130), Expect = 9e-22 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| ||||| || || || | ||||| || || |||| || || ||||| | | Sbjct 378273 ATGCAGATTTTCGTGAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTGGAGTCGTCG 378332 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | ||| | |||| || || ||||| ||||||||||| || || || || || Sbjct 378333 GACACCATCGACAACGTCAAGCAGAAGATTCAGGACAAGGAGGGCATCCCGCCTGACCAG 378392 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || || |||||||| ||| | ||||| ||||||| |||| || |||||| Sbjct 378393 CAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTCTCGGACTACAAC 378452 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || || || || || || | || || || | || ||||||| ||| Sbjct 378453 ATCCAGAAGGAGTCGACTCTGCACTTGGTGCTTCGCCTGCGCGGTGGT 378500 Score = 113 bits (124), Expect = 4e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| ||||| || || || | ||||| || || |||| || || ||||| | | Sbjct 378501 ATGCAGATTTTCGTGAAGACCCTCACCGGCAAGACTATCACCCTCGAGGTGGAGTCGTCG 378560 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | ||| | |||| || || ||||| ||||||||||| || || || || || Sbjct 378561 GACACCATCGACAACGTCAAGCAGAAGATTCAGGACAAGGAGGGCATCCCGCCTGACCAG 378620 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || || |||||||| ||| | ||||| ||||||| |||| || |||||| Sbjct 378621 CAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTCTCGGACTACAAC 378680 Query 22399 ATTCAAAAAGAATCCAC 22415 || || || || || || Sbjct 378681 ATCCAGAAGGAGTCGAC 378697 >seq151 Length=1709611 Score = 109 bits (120), Expect = 5e-19 Identities = 143/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| ||||| || || || | || || || || |||| ||||| ||||| | | Sbjct 449558 ATGCAGATTTTCGTCAAGACCCTTACGGGCAAGACCATCACCCTTGAGGTGGAGTCGTCG 449617 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | ||| | |||| || || || || ||||||||||| ||||| || || || Sbjct 449618 GACACCATCGACAACGTCAAGCAGAAGATCCAGGACAAGGAGGGCATTCCCCCTGACCAG 449677 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || || |||||||| ||| | ||||| ||||||| | || || |||||| Sbjct 449678 CAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTTTCGGACTACAAC 449737 Query 22399 ATTCAAAAAGAATCCACC 22416 || || || || || ||| Sbjct 449738 ATCCAGAAGGAGTCGACC 449755 >seq155 Length=76293 Score = 107 bits (118), Expect = 2e-18 Identities = 148/207 (71%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 22210 TTTGTAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTG 22269 |||||| ||||| ||||| ||||| || | || || || || |||| || || ||| Sbjct 26697 TTTGTAGCCATGCAGATTTTCGTTAAGACCCTGACGGGCAAGACCATCACCCTCGAGGTG 26756 Query 22270 GAAACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCA 22329 || | |||| ||| | || | | || || || || || |||||||||||||| || Sbjct 26757 GAGTCTTCCGACACCATCGATAACGTTAAGCAGAAGATCCAGGACAAGGAGGGTATCCCC 26816 Query 22330 CCCGATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCC 22389 || || || || || || || || |||||||| ||| | ||||| ||||||| | || Sbjct 26817 CCTGACCAGCAGCGCCTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTTTCG 26876 Query 22390 GATTACAACATTCAAAAAGAATCCACC 22416 || |||||||| || || || || ||| Sbjct 26877 GACTACAACATCCAGAAGGAGTCGACC 26903 >seq1 Length=3302357 Score = 107 bits (118), Expect = 2e-18 Identities = 148/207 (71%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 22210 TTTGTAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTG 22269 |||||| ||||| ||||| ||||| || | || || || || |||| || || ||| Sbjct 871851 TTTGTAGCCATGCAGATTTTCGTTAAGACCCTGACGGGCAAGACCATCACCCTCGAGGTG 871910 Query 22270 GAAACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCA 22329 || | |||| ||| | || | | || || || || || |||||||||||||| || Sbjct 871911 GAGTCTTCCGACACCATCGATAACGTTAAGCAGAAGATCCAGGACAAGGAGGGTATCCCC 871970 Query 22330 CCCGATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCC 22389 || || || || || || || || |||||||| ||| | ||||| ||||||| | || Sbjct 871971 CCTGACCAGCAGCGCCTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTTTCG 872030 Query 22390 GATTACAACATTCAAAAAGAATCCACC 22416 || |||||||| || || || || ||| Sbjct 872031 GACTACAACATCCAGAAGGAGTCGACC 872057 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419726838796255