Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Linderina_20pennispora_20[genbank_20GCA_5F002104995.1_202017-04-20] 227 sequences; 26,202,545 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq217 190 4e-43 seq210 96.9 7e-15 seq24 95.1 2e-14 >seq217 Length=908848 Score = 190 bits (210), Expect = 4e-43 Identities = 566/857 (66%), Gaps = 27/857 (3%) Strand=Plus/Plus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 |||||||| || | |||||||| || ||||| | |||||||||||||||||||| ||| Sbjct 399794 TCGAAGAAGTTGGTCTTGCCCTGCATCGAGATCATGTCCATGAAGTCGAAGGGGTTGGTG 399853 Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682 || ||| |||||||| ||||| || || || | | |||||| || |||||||| | | Sbjct 399854 GCCAGGTAGTGCTTGGGCTGGCCCAGAGCGACCAGCAGGCGGTCAGCAACAAACTCGATA 399913 Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCCAATCATACGACA-AGGAATTGCCTCACAGAT 251741 ||||| | ||| || | | ||||||||| |||| |||| || | ||||| | | Sbjct 399914 TACTGGCACATGAGCTTGGCGTTCATGCCGATCA-GTGACACGGGCAGCGCCTCGGACAG 399972 Query 251742 GAATTCCTTTTCGTTGGCAACTGCCTCCTCCACAAT-TG--CCTTCACCTGTGCCAGAGA 251798 ||| |||| ||| ||| || ||||| | || || | |||| || | Sbjct 399973 GAACTCCTGCTCGATGGTGACAGCCTCGGTGATGATCTGGAGGATGACCTCGGC---GGC 400029 Query 251799 CAGCTTGTTCTCCAGCTTTGAGTACAGGAGCTCGCCAAACTGTTGGTGCAGACCCTCGTC 251858 | || | || ||| | | |||| | | |||| | |||||| |||||||| Sbjct 400030 CGGCGGGGACTGCAGGTGGTGGAACAGCACGCAGGCAAAGTCCGTGTGCAGGCCCTCGTC 400089 Query 251859 GCGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGAGCCA 251918 ||| | ||| | |||||| || | ||| |||||||||| || || ||| ||||||| Sbjct 400090 GCGGCAGATCAGCTCGTTCGAGAAGGTCAGTCCAGGCATCAGGCCGCGCTTCTTGAGCCA 400149 Query 251919 GAAGATTG-CGCAAAAGGATCCAGAGAACAGCAGACCCTCGACACACACCCATGCAACAA 251977 |||||| | ||| ||| || || ||||| | | |||||||| | | | || || | Sbjct 400150 GAAGATCGACGC-AAACGAGCCCGAGAAGAAGATGCCCTCGACCGCCGCAAAGGCCACCA 400208 Query 251978 GGCGCTCAGCAAACGACTTGTCCT-GCGACAA--GA---ACTTCTGTGCCCATGCTGCCT 252031 ||||| | | | ||||| ||| ||| | || | | ||||| | |||| Sbjct 400209 GGCGCACGCCGA---ACTTGGCCTCGCGGTTATCGATCCAGCGAAGCGCCCAGTCGGCCT 400265 Query 252032 TCTTTCCAACCGCGGGGATTGTTTCGATTGCATCAAAGAGAGAGTTCCGCTCGGCATCGT 252091 |||| | | ||||| | ||||| || | || | | ||| ||||| || Sbjct 400266 TCTTGCGGATGCACGGGATGTTGTCGATAGCGTGGAACAAAAAGTCGCGCTCCTTGGGGT 400325 Query 252092 CCTCGATGAGCGCATCAAGCAGGAGAGAGTACATCTCCGAATGGATGGATTCGTTGAACA 252151 | |||| || |||| || || |||||| ||||||| |||||| || | | || Sbjct 400326 CGCGGATGTACGTGTCAATGAGCAGCGAGTACGTCTCCGAGTGGATGTTCTCAATCATCA 400385 Query 252152 TCTGGTAAGCATAGAATAGACGCGCGGAAGGG-TCGGTGACTTCCGTGGAAAAGTTGTTT 252210 ||||| | | ||||| ||||| ||| || | || || ||| |||||| | Sbjct 400386 TCTGGAAGCCGTAGAACGACCGCGCCTCGGGGATCTG-AACCTCGGTGCTAAAGTTCTGC 400444 Query 252211 GCAATGTTCTCCATCACCATGCCATCGCTGCCTGCAAAGAAGCCAAGAATGGTCTTGATG 252270 | | |||||| | || ||||| || | | |||||||| | || | | |||||| Sbjct 400445 ACCAGGTTCTCGTTGACGATGCCGTCCGAGGCAGCAAAGAACGCGAGCACGTACTTGATA 400504 Query 252271 AAGTGACGCTCATCGTCGTT---GAGCTTGTCACGCCAGTCGGCAATGTCCTGATTCAGA 252327 ||||||||||| | |||||| | | ||||| ||||| | | |||||||| ||| Sbjct 400505 AAGTGACGCTCGTTGTCGTTCAGGCGGTTGTC---CCAGTGGCCCATGTCCTGCGACAGG 400561 Query 252328 GGAACTTCTTCCACCGTCCAGAATGTGGACACCGCCTTCTTGTACATTGCGAACACATCA 252387 | ||| || |||||||||| | | | | |||||||||||| | | | || Sbjct 400562 TCGATTTCCTCGGCCGTCCAGAACGACGCCTCGTGCTTCTTGTACATCTCCCAGATCTCG 400621 Query 252388 GGGTACTTGATTGGGAA 252404 |||||||||| ||||| Sbjct 400622 TGGTACTTGATCGGGAA 400638 >seq210 Length=39130 Score = 96.9 bits (106), Expect = 7e-15 Identities = 104/135 (77%), Gaps = 2/135 (1%) Strand=Plus/Plus Query 218693 CTGGCTACCATCACGGTGAGCAGAGTCTGCAGGGTGCCATTGTAGGCATGGCACAGGACT 218752 ||| |||||| ||||| || ||||||||| | ||||||| |||||| ||||||| Sbjct 29977 CTGCCTACCACCACGGCGACCAGAGTCTGGTTGCCACCATTGTCAACATGGCCCAGGACT 30036 Query 218753 ATGTGGGCAGTAACAACATGAACTTGCTGCTCCCCAACGGTCAGTTT-GGTTCTCGTCTA 218811 |||| ||||| |||||||| ||| |||| | ||| | || ||||| ||| |||||||| Sbjct 30037 ATGTCGGCAGCAACAACATCAACCTGCTCGTGCCCGAAGG-AAGTTTCGGTACTCGTCTA 30095 Query 218812 TTGGGTGGAAAGGAT 218826 | || || |||||| Sbjct 30096 CTCGGCGGTAAGGAT 30110 >seq24 Length=729003 Score = 95.1 bits (104), Expect = 2e-14 Identities = 101/131 (77%), Gaps = 2/131 (2%) Strand=Plus/Plus Query 218697 CTACCATCACGGTGAGCAGAGTCTGCAGGGTGCCATTGTAGGCATGGCACAGGACTATGT 218756 |||||| ||||| || ||||||||| | ||||||| |||||| ||||||||||| Sbjct 507802 CTACCACCACGGCGACCAGAGTCTGGTTGCCACCATTGTCAACATGGCCCAGGACTATGT 507861 Query 218757 GGGCAGTAACAACATGAACTTGCTGCTCCCCAACGGTCAGTTT-GGTTCTCGTCTATTGG 218815 ||||| |||||||| ||| |||| | ||| | || ||||| ||| |||||||| | | Sbjct 507862 CGGCAGCAACAACATCAACCTGCTCGTGCCCGAAGG-AAGTTTCGGTACTCGTCTACTCG 507920 Query 218816 GTGGAAAGGAT 218826 | || |||||| Sbjct 507921 GCGGTAAGGAT 507931 Score = 86.0 bits (94), Expect = 1e-11 Identities = 161/228 (71%), Gaps = 14/228 (6%) Strand=Plus/Plus Query 217744 CTCAAGAAGACCGATGGCGTCAAGAAG-ACTCGTCTCACGGGCATCAAGAAGCTCACGGA 217802 |||||||||||||| || ||| | | | || |||||||||| | |||||| || Sbjct 506834 CTCAAGAAGACCGACGG-GTCGCGCACCAGCCGGATCACGGGCATTGACAAGCTCGATGA 506892 Query 217803 CGCTG-CATGGGCTGGCAC--CAAAAACTCTGGTCTCTGCACTCTCATCCTGACAGAGGG 217859 ||| ||||| ||||||| | |||| || | |||| || || ||||| ||||| Sbjct 506893 CGCCAACATGG-CTGGCACAGCCAAAAGCAAGGAGT--GCACGCTGATTCTGACTGAGGG 506949 Query 217860 AGACTCAGCTGCCA---CGCTGGCAACCGCTGGTCTTGCCGTGGTGGGTCGTGAAAGGTA 217916 ||||| |||||| ||||||| ||||| || | ||| ||| ||||| | || Sbjct 506950 AGACT---CTGCCAAGGCGCTGGCTGTGGCTGGACTGGGCGTTCAGGGACGTGACAAGTT 507006 Query 217917 TGGTATCTTCCCCCTCCGTGGTAAGCTGCTCAACGTGCGCGATGCCTC 217964 ||| || ||| | || || || |||| |||||| |||||||| || || Sbjct 507007 TGGGATTTTCACGCTGCGCGGAAAGCCGCTCAATGTGCGCGACGCGTC 507054 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027833810600907