Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Linderina_20pennispora_20[genbank_20GCA_5F002104995.1_202017-04-20] 227 sequences; 26,202,545 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq153 100 2e-16 seq2 95.1 1e-14 seq155 84.2 2e-11 seq151 84.2 2e-11 seq1 84.2 2e-11 >seq153 Length=77323 Score = 100 bits (110), Expect = 2e-16 Identities = 141/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || || || |||||||| || | || || ||| || || || || || Sbjct 48248 GTCGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCATCCTCGAGCTGCTTGCCG 48189 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| ||||||| ||||| ||||| || || |||||||| ||||| |||||| || || Sbjct 48188 GCGAAGATGAGGCGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCCTGAATCTTCTGCTTG 48129 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | || | |||||| | || || || || | ||| | || |||||||| || || Sbjct 48128 ACGTTGTCGATGGTGTCCGACGACTCCACCTCAAGGGTGATAGTCTTGCCGGTGAGGGTC 48069 Query 114366 TTTACAAAAATCTGCATG 114383 || ||||||||||||||| Sbjct 48068 TTCACAAAAATCTGCATG 48051 Score = 98.7 bits (108), Expect = 8e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || || || |||||||| || | ||| || || || || || || || Sbjct 48704 GTCGACTCCTTCTGGATGTTGTAGTCCGAGAGAGTGCGGCCGTCCTCGAGCTGCTTGCCG 48645 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| ||||||| ||||| ||||| || || |||||||| ||||| |||||| || || Sbjct 48644 GCGAAGATGAGGCGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCCTGAATCTTCTGCTTG 48585 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| |||||| | || || || || | ||| | || |||||||| || || Sbjct 48584 ACGTTGTCAATGGTGTCCGACGACTCCACCTCGAGGGTGATAGTCTTGCCGGTGAGGGTC 48525 Query 114366 TTTACAAAAATCTGCAT 114382 || || ||||||||||| Sbjct 48524 TTCACGAAAATCTGCAT 48508 Score = 82.4 bits (90), Expect = 6e-11 Identities = 111/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 114228 TCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTG 114287 || || || || || || ||| ||||||| ||||| ||||| || || |||||||| ||| Sbjct 48434 TCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCAGGCGGGATGCCTTCCTTG 48375 Query 114288 TCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACC 114347 || |||||| || || | | || | ||| || | || || || || | ||| | Sbjct 48374 TCCTGAATCTTCTGCTTGACGTTGTCGATGGTATCCGACGACTCCACCTCGAGGGTGATA 48315 Query 114348 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || ||||| || || || || || ||||||||||| Sbjct 48314 GTCTTGCCAGTGAGGGTCTTCACGAAAATCTGCAT 48280 >seq2 Length=801100 Score = 95.1 bits (104), Expect = 1e-14 Identities = 115/157 (73%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 114228 TCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTG 114287 || || || || || || ||| ||||||| ||||| ||||| || || ||||| || ||| Sbjct 378199 TCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCAGGCGGGATGCCCTCCTTG 378140 Query 114288 TCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACC 114347 || |||||| || || | | || | |||||| | || || || || | ||| | Sbjct 378139 TCCTGAATCTTCTGCTTGACGTTGTCGATGGTGTCCGACGACTCCACCTCGAGGGTGATA 378080 Query 114348 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGG 114384 || |||||||| || || || |||||||||||||||| Sbjct 378079 GTCTTGCCGGTGAGGGTCTTCACAAAAATCTGCATGG 378043 Score = 86.0 bits (94), Expect = 5e-12 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 114228 TCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTG 114287 || || || || || || ||| ||||||| ||||| ||||| || || ||||| || ||| Sbjct 378427 TCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCAGGCGGGATGCCCTCCTTG 378368 Query 114288 TCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACC 114347 || |||||| || || | | || | |||||| | || || || || | ||| | Sbjct 378367 TCCTGAATCTTCTGCTTGACGTTGTCGATGGTGTCCGACGACTCCACCTCGAGGGTGATG 378308 Query 114348 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||||||| || || || || ||||||||||| Sbjct 378307 GTCTTGCCGGTGAGGGTCTTCACGAAAATCTGCAT 378273 Score = 86.0 bits (94), Expect = 5e-12 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 114228 TCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTG 114287 || || || || || || ||| ||||||| ||||| ||||| || || ||||| || ||| Sbjct 378655 TCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCAGGCGGGATGCCCTCCTTG 378596 Query 114288 TCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACC 114347 || |||||| || || | | || | |||||| | || || || || | ||| | Sbjct 378595 TCCTGAATCTTCTGCTTGACGTTGTCGATGGTGTCCGACGACTCCACCTCGAGGGTGATA 378536 Query 114348 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||||||| || || || || ||||||||||| Sbjct 378535 GTCTTGCCGGTGAGGGTCTTCACGAAAATCTGCAT 378501 >seq155 Length=76293 Score = 84.2 bits (92), Expect = 2e-11 Identities = 114/159 (72%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 114228 TCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTG 114287 || || || || || || ||| |||| || ||||| ||||| || || || || || ||| Sbjct 26860 TCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCAGGGGGGATACCCTCCTTG 26801 Query 114288 TCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACC 114347 || ||||| || || | | || | |||||||| || || || || | ||| | Sbjct 26800 TCCTGGATCTTCTGCTTAACGTTATCGATGGTGTCGGAAGACTCCACCTCGAGGGTGATG 26741 Query 114348 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 114386 || ||||| ||||| || || || ||||||||||||||| Sbjct 26740 GTCTTGCCCGTCAGGGTCTTAACGAAAATCTGCATGGCT 26702 >seq151 Length=1709611 Score = 84.2 bits (92), Expect = 2e-11 Identities = 112/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 114228 TCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTG 114287 || || || || || || ||| ||||||| ||||| ||||| || |||||||| || ||| Sbjct 449712 TCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCAGGGGGAATGCCCTCCTTG 449653 Query 114288 TCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACC 114347 || ||||| || || | | || | |||||| | || || || || | ||| | Sbjct 449652 TCCTGGATCTTCTGCTTGACGTTGTCGATGGTGTCCGACGACTCCACCTCAAGGGTGATG 449593 Query 114348 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 114383 || ||||| || || || || || |||||||||||| Sbjct 449592 GTCTTGCCCGTAAGGGTCTTGACGAAAATCTGCATG 449557 >seq1 Length=3302357 Score = 84.2 bits (92), Expect = 2e-11 Identities = 114/159 (72%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 114228 TCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTG 114287 || || || || || || ||| |||| || ||||| ||||| || || || || || ||| Sbjct 872014 TCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCAGGGGGGATACCCTCCTTG 871955 Query 114288 TCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACC 114347 || ||||| || || | | || | |||||||| || || || || | ||| | Sbjct 871954 TCCTGGATCTTCTGCTTAACGTTATCGATGGTGTCGGAAGACTCCACCTCGAGGGTGATG 871895 Query 114348 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 114386 || ||||| ||||| || || || ||||||||||||||| Sbjct 871894 GTCTTGCCCGTCAGGGTCTTAACGAAAATCTGCATGGCT 871856 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420133237671924