Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Linderina_20pennispora_20[genbank_20GCA_5F002104995.1_202017-04-20] 227 sequences; 26,202,545 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq162 105 6e-18 >seq162 Length=1352108 Score = 105 bits (116), Expect = 6e-18 Identities = 277/416 (67%), Gaps = 9/416 (2%) Strand=Plus/Minus Query 122928 ATGCGCGTCGCTATAGGCGTGCACGGACGCGACATCGAAAACGCGACCGAAACTTACGAT 122987 |||||||| | | ||| | ||||| ||||| || |||| ||| || ||| | Sbjct 1304366 ATGCGCGTGTCCCTGGGCATCCACGGCTCGGACATTGACGCGGCGATCGAGACGTACAAC 1304307 Query 122988 TTGATGTCTCAAAAATTTTTCACGCACGCGAGTCCCACTTTGTTCGCCGCCGGCACGAAG 123047 | ||||| ||| || |||||||||||| || || ||||| | | |||||| | Sbjct 1304306 CTCATGTCGTCAAAGTTCTTCACGCACGCGTCGCCGACGCTGTTCAACTCGGGCACGCCG 1304247 Query 123048 T-TGCCTCAGTTGTCTTCGTGTTTTTTGCTCACCTTGCGCGAAGACAGCATCACCGGTAT 123106 | || ||| | || ||||| || | | || || || ||||||||| || || Sbjct 1304246 CGTCCCGCAGCTCTCGTCGTGCTTCCTTGTGGCCATGTCGGATGACAGCATCGAGGGCAT 1304187 Query 123107 CTATGAAACTTTGCGCGATTGCGCGTTGATTTCCAAATTTGGCGGCGGCATAGGCGTGAA 123166 ||| || || || | |||||| ||||||||| | |||||||| || || | Sbjct 1304186 CTACGACACGCTGAAGGTGTGCGCGCAGATTTCCAAGAACGCTGGCGGCATTGGGCTGCA 1304127 Query 123167 CGTGCACGACGTAAGAGGCCGCGGAAGCCG-CAT--CAGAAGCACCGACGGAATCGCCTC 123223 |||| | || | | ||| ||| | ||| ||| ||||| |||| | | Sbjct 1304126 CGTGAGCAACATCCG-GGCTACGGGCTCATACATTGCAGG-GCACCAACGGCACGTCGAA 1304069 Query 123224 CGGGCTCGAATCCATGCTGCGAGTTTACAATAACGCCGTGCGGCACGTCGACCAGGGCGG 123283 |||||| | | |||||||| || | ||| ||| | | |||| |||||||||||||||| Sbjct 1304068 CGGGCTTGTGCCGATGCTGCGTGTGTTCAACAACACGGCGCGGTACGTCGACCAGGGCGG 1304009 Query 123284 ---CAAACGCAAAGGCGCGATGGCGATCTATCTAGAACCGTGGCACGTTGATGTGT 123336 ||| || ||| ||| | ||||||||||| || |||||||| | ||||||| Sbjct 1304008 CAACAAGCGGCCAGGTGCGTTTGCGATCTATCTGGAGCCGTGGCATGCCGATGTGT 1303953 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 452001917440920