Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Linderina_20pennispora_20[genbank_20GCA_5F002104995.1_202017-04-20] 227 sequences; 26,202,545 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq162 138 1e-27 seq160 131 2e-25 seq206 105 8e-18 >seq162 Length=1352108 Score = 138 bits (152), Expect = 1e-27 Identities = 667/1043 (64%), Gaps = 26/1043 (2%) Strand=Plus/Plus Query 109710 CTTGTTGACCACGACAAATTCACCAGCAAGTGTGCGTCGGAGGTAGATGTTAGTCGTGTA 109769 || ||||||||| || || || || || ||| || ||||||||| | |||||| Sbjct 1302954 CTGGTTGACCACCTGGAACTCGCCGGCCAGGACGCGGCGCGTGTAGATGTTGGACGTGTA 1303013 Query 109770 GGGTTCGAAACACTCATTGTTGCCTAGGATTTGTGCAGTGGAAGCTGTGGGCATGGGAGC 109829 || || || ||||| ||| ||| ||||| || | || || |||||||||||||| || Sbjct 1303014 CGGCTCAAAGCACTCGTTGAAGCCGAGGATCTGCGATGTCGACGCTGTGGGCATGGGGGC 1303073 Query 109830 CATGAGAAGACTGTTTCGGAGACCCTTCGTCTTTACCCGCTCACGCATTGCGTCCCAATC 109889 || || || ||| || | || | | | ||| | || | |||||||| || Sbjct 1303074 CACAAGCAGCGAGTTGCGCACGCCGTGCTCCCGCACCTTGGCCCGGAGCGCGTCCCAGTC 1303133 Query 109890 ATAACGACCACTAAATTTAGTCTCACCATCCCACATATCTGGTTGAAGTACACCCTCAG- 109948 | || | | | | | | | |||||| ||| || || || |||| | Sbjct 1303134 CCAGCGGTC-CGAC-----GGCGCCACGCCCCACAGATCCGGCTGCAGCTTGCCCTTCGA 1303187 Query 109949 CAGCAGGAGAACCCTTGAAACTCTCGTACGACCCCTCAACCTCGGCCAACTCGGATGAAG 110008 || | || |||| | | ||||||| | || | || | |||| ||| | || | Sbjct 1303188 CATCGGGCTG-CCCTGGTACGTCTCGTAGGCGCCGTGGACGGCCGCCAGCTCACACGACG 1303246 Query 110009 CCTCTAGTGCCGCATGATACATAGTCTCAAAAATATGAGCA-TTCATGAGGCGAGACTCT 110067 |||| || |||||||| || || ||||| || || | || |||| ||| | ||| Sbjct 1303247 CCTCGAGCGCCGCATGGTAGATGGTCTCGAAGATG-GCGCGGTTCAGCTCGCGTGCCTCA 1303305 Query 110068 TCAC-AGTCGAAGGGAAGACCACAAAGA-ATAAACACATCCGCTAGACCCTGAACACCGA 110125 | | ||||| || | | || | | || |||| || || |||||||| || | Sbjct 1303306 GGCCGACTCGAACGGCATGCG-CATGGCGAGGAAGGCATCAGCCAGCCCCTGAACTCCAA 1303364 Query 110126 GACCAATGGGGCGATGCTTCATGTTAGAGCGTCGAGCAGTTTCT---ACGGGGTAAAAGT 110182 || ||||| || || |||||| ||| || || || || ||||| |||| Sbjct 1303365 TGCCGATGGGACGGTGGCGCATGTTGCTGCG--GACGCGTCTCGGGCACCGGGTAGAAGT 1303422 Query 110183 TGCGGTCGATGACCCGATTGAGATTCTTCGTCACAGTCTTCGTGATTTCATGGAGTTTGT 110242 || |||||||| | || || ||||| || || ||| |||| || || || | | Sbjct 1303423 TGATGTCGATGATCTTGTTCAGGTTCTTGGTGACCACCTTGGTGACGTCGTGCAGCTGCT 1303482 Query 110243 CGTAATCGAACGTTTTCGTCTCCTTATTGACATATTTGGGGAGAGCAATAGACGCAAGAT 110302 | | ||| || ||| | | |||||| | || || ||||| ||||| || | Sbjct 1303483 GGAAGTCGTACTCGGTCGGC--CGACTTGACAAACGACGGCAGCGCAATCGACGCCAGGT 1303540 Query 110303 TGCACACAGAAGTC-TCGTCTTTGTCGGTGTATTCCAAAATTTCCGTACACAAGTTGGAA 110361 ||||||||| | ||||| | | ||| || | || || || |||| ||| || Sbjct 1303541 TGCACACAGGCCACCTCGTCGGGGCTCGAGTACTCGACGATCTCTGTGCACAGGTTCGAG 1303600 Query 110362 CTCTTAATGACACCCAAGTTCTTCTGATTCGATTTGGAGTTGCATGCATCCTTATAGAGC 110421 | ||| || || | ||||| ||| ||||| ||| ||||||||||||||| || ||| Sbjct 1303601 CACTTGATCGTGCCGAGGTTCTGCTGGTTCGACTTGCGGTTGCATGCATCCTTGTACAGC 1303660 Query 110422 ATGTATGGGGTACCAGTTTCCGTCTGTGACTTGAGAATGGCCTTCCATA-CATCGGCGGC 110480 ||| | ||| | || || || |||| | | || || || | ||| | | || | || Sbjct 1303661 ATGAACGGGTTCCCCGTCTCGATCTGCGCGTCCAGGATCGCATACCACAGCTTCTG-TGC 1303719 Query 110481 GGGGACAGTTGCGTTAGCGAGACCTTCC---TCCTCGTACTTGGTGTACAAGTCCTCAAA 110537 | || || | | || || || | | |||||||||||| |||| | ||||||| Sbjct 1303720 GTCGATGGTCGAGCGCGCCAGGCCAGGCGTGTTCTCGTACTTGGTATACAGGGCCTCAAA 1303779 Query 110538 TTCCTGTCCGTACACATCAGAAAGACCCTTCGCCTTGTCGGGACAGAAGAGGGACCAATT 110597 || | || |||| || | || |||| || || ||||| || ||||| || Sbjct 1303780 CTCATCGCCCCACACCTCCTGCATGCCGGGTGCCTCGTGCGGGCAGAACAGCGACCACTT 1303839 Query 110598 TCCACCCTCCTCAACCCTCTTCATGAACAGGTCAGGAATCCACATCGCCGAGAAAAGGTC 110657 || || | || | |||||||||||| || || ||||||| ||| |||| ||||| Sbjct 1303840 GCCGCCGGCAATGACGCGCTTCATGAACAGATCCGGGATCCACAGCGCATAGAACAGGTC 1303899 Query 110658 ACGGCAACGAGCCTCTTCATCACCTTGGTTGAGGCGTAGCTCCAAAAAGTCCATGATATC 110717 ||| || |||| || | || ||||| ||| || |||| || | | | ||| Sbjct 1303900 GCGGGCCCGCACCTCCTCCTTGCCGTGGTTCTTGCGCAGATCCAGGAACGCAAACACATC 1303959 Query 110718 CGAGTGCCATGGTTCGAGATAGA 110740 | ||||| || || ||||||| Sbjct 1303960 GGCATGCCACGGCTCCAGATAGA 1303982 >seq160 Length=71855 Score = 131 bits (144), Expect = 2e-25 Identities = 615/960 (64%), Gaps = 29/960 (3%) Strand=Plus/Plus Query 109752 GTAGATGTTAGTCGTGTAGGGTTCGAAACACTCATTGTTGCCTAGGATTTGTGCAGTGGA 109811 ||||||||| | |||||| || || || ||||| ||| ||| ||||| || | || || Sbjct 70909 GTAGATGTTGGACGTGTACGGCTCAAAGCACTCGTTGAAGCCGAGGATCTGCGATGTCGA 70968 Query 109812 AGCTGTGGGCATGGGAGCCATGAGAAGACTGTTTCGGAGACCCTTCGTCTTTACCCGCTC 109871 |||||||||||||| |||| || || ||| || | || | | | ||| | Sbjct 70969 CGCTGTGGGCATGGGGGCCACAAGCAGCGAGTTGCGCACGCCGTGCTCCCGCACCTTGGC 71028 Query 109872 ACGCATTGCGTCCCAATCATAACGACCACTAAATTTAGTCTCACCATCCCACATATCTGG 109931 || | |||||||| || | || | | | | | | | |||||| ||| || Sbjct 71029 CCGGAGCGCGTCCCAGTCCCAGCGGTC-CGAC-----GGCGCCACGCCCCACAGATCCGG 71082 Query 109932 TTGAAGTACACCCTCAG-CAGCAGGAGAACCCTTGAAACTCTCGTACGACCCCTCAACCT 109990 || || |||| | || | || |||| | | ||||||| | || | || Sbjct 71083 CTGCAGCTTGCCCTTCGACATCGGGCTG-CCCTGGTACGTCTCGTAGGCGCCGTGGACGG 71141 Query 109991 CGGCCAACTCGGATGAAGCCTCTAGTGCCGCATGATACATAGTCTCAAAAATATGAGCA- 110049 | |||| ||| | || ||||| || |||||||| || || ||||| || || | || Sbjct 71142 CCGCCAGCTCACACGACGCCTCGAGCGCCGCATGGTAGATGGTCTCGAAGATG-GCGCGG 71200 Query 110050 TTCATGAGGCGAGACTCTTCACAGTCGAAGGGAAGACCACAAAGA-ATAAACACATCCGC 110108 |||| ||| | ||| | | ||||| || | | || | | || |||| || Sbjct 71201 TTCAGCTCGCGTGCCTCAGCCGACTCGAACGGCATGCG-CATGGCGAGGAAGGCATCAGC 71259 Query 110109 TAGACCCTGAACACCGAGACCAATGGGGCGATGCTTCATGTTAGAGCGTCGAGCAGTTTC 110168 || |||||||| || | || ||||| || ||| |||||| ||| || | | || Sbjct 71260 CAGCCCCTGAACTCCAATGCCGATGGGACGGTGCG-CATGTTGCTGCGACGCG---TCTC 71315 Query 110169 T---ACGGGGTAAAAGTTGCGGTCGATGACCCGATTGAGATTCTTCGTCACAGTCTTCGT 110225 || ||||| |||||| |||||||| | || || ||||| || || ||| || Sbjct 71316 GGGCACCGGGTAGAAGTTGATGTCGATGATCTTGTTCAGGTTCTTGGTGACCACCTTGGT 71375 Query 110226 GATTTCATGGAGTTTGTCGTAATCGAACGTTTTCGTCTCCTTATTGACATATTTGGGGAG 110285 || || || || | | | | ||| || ||| | |||||| | || || Sbjct 71376 GACGTCGTGCAGCTGCTGGAAGTCGTACTCGGTCGCGAC----TTGACAAACGACGGCAG 71431 Query 110286 AGCAATAGACGCAAGATTGCACACAGAAGTCTCGTCTTTGTCGGTGTATTCCAAAATTTC 110345 ||||| ||||| || |||||||||| |||||| | | ||| || | || || Sbjct 71432 CGCAATCGACGCCAGGTTGCACACAGCCACCTCGTCGGGGCTCGAGTACTCGACGATCTC 71491 Query 110346 CGTACACAAGTTGGAACTCTTAATGACACCCAAGTTCTTCTGATTCGATTTGGAGTTGCA 110405 || |||| ||| || | ||| || || | ||||| ||| ||||| ||| |||||| Sbjct 71492 TGTGCACAGGTTCGAGCACTTGATCGTGCCGAGGTTCTGCTGGTTCGACTTGCGGTTGCA 71551 Query 110406 TGCATCCTTATAGAGCATGTATGGGGTACCAGTTTCCGTCTGTGACTTGAGAATGGCCTT 110465 ||||||||| || |||||| | ||| | || || || |||| | | || || || | Sbjct 71552 TGCATCCTTGTACAGCATGAACGGGTTCCCCGTCTCGATCTGCGCGTCCAGGATCGCATA 71611 Query 110466 CCATA-CATCGGCGGCGGGGACAGTTGCGTTAGCGAGACCTTCC---TCCTCGTACTTGG 110521 ||| | | || | ||| || || | | || || || | | ||||||||||| Sbjct 71612 CCACAGCTTCTG-TGCGTCGATGGTCGAGCGCGCCAGGCCAGGCGTGTTCTCGTACTTGG 71670 Query 110522 TGTACAAGTCCTCAAATTCCTGTCCGTACACATCAGAAAGACCCTTCGCCTTGTCGGGAC 110581 | |||| | ||||||| || | || |||| || | || |||| || || | Sbjct 71671 TATACAGGGCCTCAAACTCATCGCCCCACACCTCCTGCATGCCGGGTGCCTCGTGCGGGC 71730 Query 110582 AGAAGAGGGACCAATTTCCACCCTCCTCAACCCTCTTCATGAACAGGTCAGGAATCCACA 110641 |||| || || || || || || | || | |||||||||||| || || ||||||| Sbjct 71731 AGAACAGCGA-CACTTGCCGCCGGCAATGACGCGCTTCATGAACAGATCCGGGATCCACA 71789 Query 110642 TCGCCGAGAAAAGGTCACGGCAACGAGCCTCTTCATCACCTTGGTTGAGGCGTAGCTCCA 110701 ||| |||| ||||| ||| || |||| || | || ||||| ||| || |||| Sbjct 71790 GCGCATAGAACAGGTCGCGGGCCCGCACCTCCTCCTTGCCGTGGTTCTTGCGCAGATCCA 71849 >seq206 Length=910674 Score = 105 bits (116), Expect = 8e-18 Identities = 315/476 (66%), Gaps = 15/476 (3%) Strand=Plus/Minus Query 11503 CGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTTGTAGCG 11562 |||||||||||||| ||||| | || || ||| || | ||| ||||| ||| || Sbjct 283480 CGATCGAAACGACCAGGGCGCATCAGCGCCGGATCCAGCACATCAGGCCGGTTGGTACCG 283421 Query 11563 GCAATGACTACAA--TGCCAGTCTCATTGTCGAAACCGTCCATTTCTGTGAGAAGCTGGT 11620 || | || || | ||| | | | | || |||||||| || | |||||| | Sbjct 283420 GCCAGGATCACGACGTGCTCGCTGGA--GCCAAAGCCGTCCATCTCGACCAAAAGCTGAT 283363 Query 11621 TGATCGTCTGTTCACGCTCATCGTTGGAGGGCAT---ACCACCT--GCCGAACGCTTCTT 11675 | | ||| || |||||||||||| | ||| |||||| |||| ||| ||| Sbjct 283362 TCAGCGTAGCCTCGCGCTCATCGTTGCCGCCCATGGCACCACCGCGGCCGCGCGC--CTT 283305 Query 11676 ACCGACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGCCTGT-T 11734 || | |||||||||||| || ||||| | || ||||| ||| | || |||| | Sbjct 283304 GCCAATAGCGTCAATCTCGTCAATGAAGATAATGCACGGAGCGTTCTT-CTTGGCTGTCT 283246 Query 11735 CGAAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTGCGG 11794 ||| || || || | ||| || || ||||| || |||||||| || || | | Sbjct 283245 GGAACAGGTCGCGGATACGGGCCGAACCGACACCAACAAACATCTCGACAAACTCAGATC 283186 Query 11795 CAGAACACTGA-ATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAGAGTC 11853 | || ||| || | ||| || ||| || ||| ||||| |||| || || || ||| Sbjct 283185 CTGA-CACCGACAGGAACGGCACACCAGCCTCGCCAGCAGTGGCCTTGGCCAGCAGCGTC 283127 Query 11854 TTACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACCACTTCCA 11913 ||||| |||||||| | || | || | || || ||| ||||||||||| | Sbjct 283126 TTACCGGTACCAGGCGGGCCCGACAGGATCGCACCCTTGGGAATCTTGGCACCGAGGCGC 283067 Query 11914 AAGTAGCGCTCAGGCTTCTTGAGGAAGTCCACAATCTCCTCAAGTTCCTCCTTGGC 11969 |||| |||||||| ||| ||||| | |||| |||| | ||||| ||||| Sbjct 283066 TCGTAGACCTCAGGCTCCTTCAGGAACTTGACAAACTCCATGATCTCCTCTTTGGC 283011 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588974328780600