Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Linderina_20pennispora_20[genbank_20GCA_5F002104995.1_202017-04-20] 227 sequences; 26,202,545 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq2 123 2e-23 seq153 116 2e-21 seq155 107 1e-18 seq151 107 1e-18 seq1 107 1e-18 >seq2 Length=801100 Score = 123 bits (136), Expect = 2e-23 Identities = 157/214 (73%), Gaps = 8/214 (4%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||| | || || ||||| ||||| |||||||| ||| | || | || || Sbjct 378481 ACCAAGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCGTCCTCG 378422 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| || ||||| || || || || |||||||| |||| | ||||||||||| | Sbjct 378421 AGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGA 378362 Query 34893 ATCTTCTGTTTGACGGATGCTATCGAT--TCACCG--GCCTCAACATCGACGGTTATGGT 34948 |||||||| ||||| | | ||||| | ||| | ||| || |||| ||| ||||| Sbjct 378361 ATCTTCTGCTTGAC----GTTGTCGATGGTGTCCGACGACTCCACCTCGAGGGTGATGGT 378306 Query 34949 TTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || || ||||| |||||||| || ||||||||| Sbjct 378305 CTTGCCGGTGAGGGTCTTCACGAAAATCTGCATA 378272 Score = 122 bits (134), Expect = 6e-23 Identities = 156/213 (73%), Gaps = 8/213 (4%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||| | || || ||||| ||||| |||||||| ||| | || | || || Sbjct 378253 ACCAAGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCGTCCTCG 378194 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| || ||||| || || || || |||||||| |||| | ||||||||||| | Sbjct 378193 AGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGA 378134 Query 34893 ATCTTCTGTTTGACGGATGCTATCGAT--TCACCG--GCCTCAACATCGACGGTTATGGT 34948 |||||||| ||||| | | ||||| | ||| | ||| || |||| ||| || || Sbjct 378133 ATCTTCTGCTTGAC----GTTGTCGATGGTGTCCGACGACTCCACCTCGAGGGTGATAGT 378078 Query 34949 TTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || || ||||| ||||||||||| |||||||| Sbjct 378077 CTTGCCGGTGAGGGTCTTCACAAAAATCTGCAT 378045 Score = 118 bits (130), Expect = 7e-22 Identities = 145/196 (74%), Gaps = 8/196 (4%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| |||||||| ||| | || | || || ||||| || ||||| || Sbjct 378691 TCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAG 378632 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || |||||||| |||| | ||||||||||| ||||||||| ||||| Sbjct 378631 ATGAGGCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGAATCTTCTGCTTGAC---- 378576 Query 34911 GCTATCGAT--TCACCG--GCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTT 34966 | | ||||| | ||| | ||| || |||| ||| || || || || ||||| ||||| Sbjct 378575 GTTGTCGATGGTGTCCGACGACTCCACCTCGAGGGTGATAGTCTTGCCGGTGAGGGTCTT 378516 Query 34967 CACAAAGATCTGCATA 34982 ||| || ||||||||| Sbjct 378515 CACGAAAATCTGCATA 378500 >seq153 Length=77323 Score = 116 bits (128), Expect = 2e-21 Identities = 144/195 (74%), Gaps = 8/195 (4%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| |||||||| ||| | || |||| || ||||| || ||||| || Sbjct 48242 TCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAG 48183 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || |||||||| |||| | || |||||||| ||||||||| |||||| Sbjct 48182 ATGAGGCGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCCTGAATCTTCTGCTTGACGT-- 48125 Query 34911 GCTATCGAT--TCACCGGC--CTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTT 34966 | ||||| | ||| | ||| || || | ||| || || || || ||||| ||||| Sbjct 48124 --TGTCGATGGTGTCCGACGACTCCACCTCAAGGGTGATAGTCTTGCCGGTGAGGGTCTT 48067 Query 34967 CACAAAGATCTGCAT 34981 |||||| |||||||| Sbjct 48066 CACAAAAATCTGCAT 48052 >seq155 Length=76293 Score = 107 bits (118), Expect = 1e-18 Identities = 152/213 (71%), Gaps = 8/213 (4%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||| ||||| || || ||||| ||||| |||||||||||| | || | || || Sbjct 26914 ACCAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCGTCCTCG 26855 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| || ||||| || || || || |||||||| | || | ||||||||||| Sbjct 26854 AGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCAGGGGGGATACCCTCCTTGTCCTGG 26795 Query 34893 ATCTTCTGTTTGACGGATGCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGGT 34948 |||||||| || || | ||||||| || | ||| || |||| ||| ||||| Sbjct 26794 ATCTTCTGCTTAAC----GTTATCGATGGTGTCGGAAGACTCCACCTCGAGGGTGATGGT 26739 Query 34949 TTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || ||||| || ||||| || || |||||||| Sbjct 26738 CTTGCCCGTCAGGGTCTTAACGAAAATCTGCAT 26706 >seq151 Length=1709611 Score = 107 bits (118), Expect = 1e-18 Identities = 142/195 (73%), Gaps = 8/195 (4%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| |||||||||||| | || | || || ||||| || ||||| || Sbjct 449748 TCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAG 449689 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || |||||||| | || | ||||||||||| |||||||| ||||| Sbjct 449688 ATGAGGCGCTGCTGGTCAGGGGGAATGCCCTCCTTGTCCTGGATCTTCTGCTTGAC---- 449633 Query 34911 GCTATCGAT--TCACCG--GCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTT 34966 | | ||||| | ||| | ||| || || | ||| ||||| || ||||| || ||||| Sbjct 449632 GTTGTCGATGGTGTCCGACGACTCCACCTCAAGGGTGATGGTCTTGCCCGTAAGGGTCTT 449573 Query 34967 CACAAAGATCTGCAT 34981 || || |||||||| Sbjct 449572 GACGAAAATCTGCAT 449558 >seq1 Length=3302357 Score = 107 bits (118), Expect = 1e-18 Identities = 152/213 (71%), Gaps = 8/213 (4%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||| ||||| || || ||||| ||||| |||||||||||| | || | || || Sbjct 872068 ACCAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCGTCCTCG 872009 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| || ||||| || || || || |||||||| | || | ||||||||||| Sbjct 872008 AGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCAGGGGGGATACCCTCCTTGTCCTGG 871949 Query 34893 ATCTTCTGTTTGACGGATGCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGGT 34948 |||||||| || || | ||||||| || | ||| || |||| ||| ||||| Sbjct 871948 ATCTTCTGCTTAAC----GTTATCGATGGTGTCGGAAGACTCCACCTCGAGGGTGATGGT 871893 Query 34949 TTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || ||||| || ||||| || || |||||||| Sbjct 871892 CTTGCCCGTCAGGGTCTTAACGAAAATCTGCAT 871860 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324632701880856