Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Linderina_20pennispora_20[genbank_20GCA_5F002104995.1_202017-04-20] 227 sequences; 26,202,545 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq68 147 6e-30 seq162 111 5e-19 seq160 111 5e-19 seq57 96.9 1e-14 >seq68 Length=346515 Score = 147 bits (162), Expect = 6e-30 Identities = 224/314 (71%), Gaps = 4/314 (1%) Strand=Plus/Minus Query 302565 CATAATGTCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTT 302624 ||| ||||| || | |||||| | ||| |||||||| || || || || || || Sbjct 312700 CATGATGTCCTCAAGCGCCTTGATCAGACGGCGCTGAATGTACCCGGTCTCAGCAGTCTT 312641 Query 302625 TACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGG 302684 ||||| ||||| || ||||| |||| |||||||| || |||||| | | ||||| ||| Sbjct 312640 CACAGCAGTATCGATGAGACCCTCACGGCCACCCATGGCGTGGAAGTAGAACTCTTGCGG 312581 Query 302685 TCGT-AGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGC-CTCGGGCGAATCGTCG 302742 ||| || || | | | ||| |||| || || || | || ||||||||| | |||| Sbjct 312580 -CGTCAGACCACGCAGGTACGAGTTCTCGACAAAGCC-CTTGCTCTCGGGCGAGTAGTCG 312523 Query 302743 AACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCA 302802 ||||| |||||| ||||||| | || || ||||||| ||||||||||| || || Sbjct 312522 TCCTTGGCAAAGTGCGGCAGGGAGCGGTACTTGAAGCCGTACGGGATACGCTTGCCCTCG 312463 Query 302803 ACGTTCTGCTGTCCCAGGCACGAAATCATCTGCGAAATATTTAAATCACTGCCCTTGGAG 302862 ||||||||||| || | || | |||||||||| | || | | |||||||| Sbjct 312462 ACGTTCTGCTGGCCGACACAGGCCGTCATCTGCGAGACGTTGATGTACGATCCCTTGGAT 312403 Query 302863 CCAGCATTTACCAT 302876 || |||| ||||| Sbjct 312402 CCGGCATCGACCAT 312389 >seq162 Length=1352108 Score = 111 bits (122), Expect = 5e-19 Identities = 131/176 (74%), Gaps = 5/176 (3%) Strand=Plus/Plus Query 155587 CAATAGACGCCAGATTACATACCGCAGTCTCCTTGTCGTCGCT---GTATTCTACAATCT 155643 |||| |||||||| || || || | | | ||| |||| ||| ||| || || |||| Sbjct 1303526 CAATCGACGCCAGGTTGCACACAG--GCCACCTCGTCGGGGCTCGAGTACTCGACGATCT 1303583 Query 155644 CACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTTAGATTTACTGTTAC 155703 | ||||||||| || | |||||| ||||| | |||| |||||| || || | ||| | Sbjct 1303584 CTGTGCACAGGTTCGAGCACTTGATCGTGCCGAGGTTCTGCTGGTTCGACTTGCGGTTGC 1303643 Query 155704 AAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGCGTCCAGAATC 155759 | ||||||||||| || ||| | ||| | || ||||| ||||| |||||||| ||| Sbjct 1303644 ATGCATCCTTGTACAGCATGAACGGGTTCCCCGTCTCGATCTGCGCGTCCAGGATC 1303699 >seq160 Length=71855 Score = 111 bits (122), Expect = 5e-19 Identities = 131/176 (74%), Gaps = 6/176 (3%) Strand=Plus/Plus Query 155587 CAATAGACGCCAGATTACATACCGCAGTCTCCTTGTCGTCGCT---GTATTCTACAATCT 155643 |||| |||||||| || || || || | ||| |||| ||| ||| || || |||| Sbjct 71434 CAATCGACGCCAGGTTGCACACAGC---CACCTCGTCGGGGCTCGAGTACTCGACGATCT 71490 Query 155644 CACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTTAGATTTACTGTTAC 155703 | ||||||||| || | |||||| ||||| | |||| |||||| || || | ||| | Sbjct 71491 CTGTGCACAGGTTCGAGCACTTGATCGTGCCGAGGTTCTGCTGGTTCGACTTGCGGTTGC 71550 Query 155704 AAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGCGTCCAGAATC 155759 | ||||||||||| || ||| | ||| | || ||||| ||||| |||||||| ||| Sbjct 71551 ATGCATCCTTGTACAGCATGAACGGGTTCCCCGTCTCGATCTGCGCGTCCAGGATC 71606 >seq57 Length=497762 Score = 96.9 bits (106), Expect = 1e-14 Identities = 175/256 (68%), Gaps = 0/256 (0%) Strand=Plus/Minus Query 251404 GCGATAAGACCACACTTATTACACACATGGACGCTGTAAGCATCAGATGCGTCATATAGC 251463 || || || || ||| | | || ||||| || ||||| ||||| || || ||| | ||| Sbjct 209999 GCCATCAGGCCGCACCTGTCGCAGACATGCACTCTGTAGGCATCGGAGGCATCAAACAGC 209940 Query 251464 CGACCCTTGGTGAAGCGAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCG 251523 || |||| ||| ||| | ||||| | |||||| ||| |||||||| |||||| Sbjct 209939 CGCTCCTTCAGGAACTGAGCCACGCCGTGGGCAATCATGACATCGCGCTCCATCTCACCG 209880 Query 251524 AAACGAAGACCACCATCGCGAGCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCATA 251583 ||||| || ||||| || || | | ||||||| | ||||| || || || | || Sbjct 209879 AAACGCAGGCCACCGTCACGCGAGCGACCCTCGACGGGCTGGCGGGTCAGGATCTGCACG 209820 Query 251584 GGACCGATGGAGCGGCTATGTTGCTTATCATTTACCATATGCTTGAGACGCTGGTAGAAT 251643 || || || || || ||| || | ||||| ||||| || ||||||||| | Sbjct 209819 GGGCCACGGGCACGCGAGTGGATCTTGTCGTCGACCATGTGCTTCAGGCGCTGGTAGTAC 209760 Query 251644 GCGGGACCGATGAAGA 251659 | |||||| | |||| Sbjct 209759 GTGGGACCCAAAAAGA 209744 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471813319310499