Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Linderina_20pennispora_20[genbank_20GCA_5F002104995.1_202017-04-20] 227 sequences; 26,202,545 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq162 132 4e-26 >seq162 Length=1352108 Score = 132 bits (146), Expect = 4e-26 Identities = 418/644 (65%), Gaps = 14/644 (2%) Strand=Plus/Plus Query 139378 AGCGACCATACGCCGTTCGCCTTGACGCGCCTCATGAACAGATCCGGAATCCACAAAGCG 139437 |||||||| |||| || |||||||| |||||||||||||||| ||||||| || Sbjct 1303829 AGCGACCACTTGCCGCCGGCAATGACGCGCTTCATGAACAGATCCGGGATCCACAGCGCA 1303888 Query 139438 AACAGCAAATCGCGCGCCTTCTTATCTTCCGAACCCATGTTACGTTTCATGTTAAGGAAA 139497 | | || ||||| ||| | || ||| || ||| || | ||||| Sbjct 1303889 TAGAACAGGTCGCGGGCCCGCACCTCCTCCTTGCCGTGGTTCTTGCGCAGATCCAGGAAC 1303948 Query 139498 TCAAAAACGTCAGCGTGCCATGGTTCCAGATAGATGGCCATTGCGCCTTTCCGTTTG--- 139554 |||| || || || ||||| || ||||||||||| || | || ||| ||| ||| Sbjct 1303949 GCAAACACATCGGCATGCCACGGCTCCAGATAGATCGCAAACGCACCTGGCCGCTTGTTG 1304008 Query 139555 CCACCTTGATCGACGTGTCGTACAGCATTATTGAATACGCGCAACATCGGCTCCAGACCG 139614 || || || ||||||| || | | || ||||| || |||| ||||||| | || ||| Sbjct 1304009 CCGCCCTGGTCGACGTACCGCGCCGTGTTGTTGAACACACGCAGCATCGGCACAAGCCCG 1304068 Query 139615 CTCGCTGTTCCGTTGGTGCT-----ACGGATGGGACTGTTGCGAGCTCGGACGTCATGTA 139669 ||| || |||||||||| | | ||| | | || ||| |||| || | Sbjct 1304069 TTCGACGTGCCGTTGGTGCCCTGCAATGTATGAGCCCGT----AGCCCGGATGTTGCTCA 1304124 Query 139670 CATTGATGCCGATTCCGCCGCCAAATTTGGATATTAAAACGCAATCGCGTAATGTCTCGT 139729 | | | || || ||||| | ||||| || |||| | | || |||| Sbjct 1304125 CGTGCAGCCCAATGCCGCCAGCGTTCTTGGAAATCTGCGCGCACACCTTCAGCGTGTCGT 1304184 Query 139730 ATATACCTCTTATGCTGTCGTCCTGCATCGTGACCAGAAAGCATGACGAAAGTTGCGGTA 139789 | || || |||||||| ||| ||| | || || ||||| ||||| || ||||| | Sbjct 1304185 AGATGCCCTCGATGCTGTCATCCGACATGGCCACAAGGAAGCACGACGAGAGCTGCGGGA 1304244 Query 139790 -GTTTCGTGCCGGCTGCAAACAGAGTAGGACTCGCGTGCGTGAACATTTGTTTCGACATC 139848 | |||||| | ||||| || || |||||||||||| | | | |||||| Sbjct 1304245 CGCGGCGTGCCCGAGTTGAACAGCGTCGGCGACGCGTGCGTGAAGAACTTTGACGACATG 1304304 Query 139849 AATTCGTACGTTTCGATGGCGCTCACAATATCCCTTCCGTGGATACCGACAGAGACTCGC 139908 | | |||||| ||||| || |||| ||| |||||||| || | || || ||| Sbjct 1304305 AGGTTGTACGTCTCGATCGCCGCGTCAATGTCCGAGCCGTGGATGCCCAGGGACACGCGC 1304364 Query 139909 ATCAGCATATGTTGGATCCGTTCGGCCACCGCGCCC-TCGAtttttttCAGATAACCGTT 139967 |||| || || || || ||| ||| | ||||| | ||| |||||| | Sbjct 1304365 ATCACCAGGTGCTGCGGGCGCTCGACCAACACGCCCATTGATGCGCAGCAGATACGAGCG 1304424 Query 139968 CTCTAGGGTCTTGTAGCCAAAGTACCTATAGTTGAAATCGAGCG 140011 ||| || |||||| | |||||| | | |||||||| ||| ||| Sbjct 1304425 CTCGAGCGTCTTGAACCCAAAGAAGTTGTAGTTGAAGTCGCGCG 1304468 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449896323415560