Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Linderina_20pennispora_20[genbank_20GCA_5F002104995.1_202017-04-20] 227 sequences; 26,202,545 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq2 96.9 7e-15 >seq2 Length=801100 Score = 96.9 bits (106), Expect = 7e-15 Identities = 161/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | || || || || ||||||||||| || || ||||| || || || || | Sbjct 378273 TACCACCGCGCAGGCGAAGCACCAAGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCCG 378214 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | || | | ||||| || || || || || || ||||| || | || || || || | Sbjct 378213 AGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCAGGCG 378154 Query 82702 GTATTCCTTCCTTATCTTGAATCTT-TGCTTTTACATTTTCAATCGTATCATTAGGTTCT 82760 | || || ||||| || |||||||| ||| || || || || || || || | || Sbjct 378153 GGATGCCCTCCTTGTCCTGAATCTTCTGC-TTGACGTTGTCGATGGTGTCCGACGACTCC 378095 Query 82761 ACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || || | || || |||||||| || | ||||| ||||| |||||||| Sbjct 378094 ACCTCGAGGGTGATAGTCTTGCCGGTGAGGGTCTTCACAAAAATCTGCAT 378045 Score = 93.3 bits (102), Expect = 8e-14 Identities = 160/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | || || || || ||||||||||| || || ||||| || || || || | Sbjct 378501 TACCACCGCGCAGGCGAAGCACCAAGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCCG 378442 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | || | | ||||| || || || || || || ||||| || | || || || || | Sbjct 378441 AGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCAGGCG 378382 Query 82702 GTATTCCTTCCTTATCTTGAATCTT-TGCTTTTACATTTTCAATCGTATCATTAGGTTCT 82760 | || || ||||| || |||||||| ||| || || || || || || || | || Sbjct 378381 GGATGCCCTCCTTGTCCTGAATCTTCTGC-TTGACGTTGTCGATGGTGTCCGACGACTCC 378323 Query 82761 ACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || || | || || |||||||| || | ||||| || || |||||||| Sbjct 378322 ACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTCACGAAAATCTGCAT 378273 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981824344416953