Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Linderina_20pennispora_20[genbank_20GCA_5F002104995.1_202017-04-20] 227 sequences; 26,202,545 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq153 102 2e-16 seq2 89.7 1e-12 >seq153 Length=77323 Score = 102 bits (112), Expect = 2e-16 Identities = 146/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| || || ||||| || || || ||||| | || ||||| || ||| Sbjct 48055 CAGATTTTTGTGAAGACCCTCACCGGCAAGACTATCACCCTTGAGGTGGAGTCGTCGGAC 48114 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| || ||||| |||||||| || || ||||| || ||| ||| || Sbjct 48115 ACCATCGACAACGTCAAGCAGAAGATTCAGGACAAGGAAGGCATCCCGCCTGACCAGCAG 48174 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || ||||||||||| |||||| | || ||||| | || | | || |||||| || Sbjct 48175 CGCCTCATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGCACCCTCTCGGACTACAACATC 48234 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||| ||||| ||||| ||||| || Sbjct 48235 CAGAAGGAGTCGACTCTGCACCTGGT 48260 Score = 93.3 bits (102), Expect = 1e-13 Identities = 137/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || ||||| || || || ||||| | || ||||| || ||||| | || Sbjct 48523 AAGACCCTCACCGGCAAGACTATCACCCTCGAGGTGGAGTCGTCGGACACCATTGACAAC 48582 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||||| |||||||| || || ||||| || ||| ||| || | || |||||| Sbjct 48583 GTCAAGCAGAAGATTCAGGACAAGGAAGGCATCCCGCCTGACCAGCAGCGCCTCATCTTC 48642 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||| |||||| | || || || | ||| | | || |||||| ||||||| ||||| Sbjct 48643 GCCGGCAAGCAGCTCGAGGACGGCCGCACTCTCTCGGACTACAACATCCAGAAGGAGTCG 48702 Query 206365 ACTCTTCACCTTGT 206378 ||||| ||||| || Sbjct 48703 ACTCTGCACCTGGT 48716 Score = 89.7 bits (98), Expect = 1e-12 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || ||||| || || || ||||| | || ||||| || || || |||| Sbjct 48295 AAGACCCTCACTGGCAAGACTATCACCCTCGAGGTGGAGTCGTCGGATACCATCGACAAC 48354 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||||| |||||||| || || ||||| || ||| ||| || | || |||||| Sbjct 48355 GTCAAGCAGAAGATTCAGGACAAGGAAGGCATCCCGCCTGACCAGCAGCGCCTCATCTTC 48414 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||| |||||| | || || || | || | | || |||||| ||||||| ||||| Sbjct 48415 GCCGGCAAGCAGCTCGAGGACGGCCGCACCCTCTCGGACTACAACATCCAGAAGGAGTCG 48474 Query 206365 ACTCTTCACCTTGT 206378 ||||| ||||| || Sbjct 48475 ACTCTGCACCTGGT 48488 >seq2 Length=801100 Score = 89.7 bits (98), Expect = 1e-12 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || ||||| || || || ||||| | || ||||| || ||||| |||| Sbjct 378516 AAGACCCTCACCGGCAAGACTATCACCCTCGAGGTGGAGTCGTCGGACACCATCGACAAC 378575 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||||| |||||||| || || || || || ||| ||| || | || |||||| Sbjct 378576 GTCAAGCAGAAGATTCAGGACAAGGAGGGCATCCCGCCTGACCAGCAGCGCCTCATCTTC 378635 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||| |||||| | || || || | || | | || |||||| ||||||| ||||| Sbjct 378636 GCCGGCAAGCAGCTCGAGGACGGCCGCACCCTCTCGGACTACAACATCCAGAAGGAGTCG 378695 Query 206365 ACTCTTCACCTTGT 206378 ||||| ||||| || Sbjct 378696 ACTCTGCACCTGGT 378709 Score = 87.8 bits (96), Expect = 4e-12 Identities = 140/201 (70%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| || || ||||| || || || ||||| | || ||||| || ||| Sbjct 378048 CAGATTTTTGTGAAGACCCTCACCGGCAAGACTATCACCCTCGAGGTGGAGTCGTCGGAC 378107 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| || ||||| |||||||| || || || || || ||| ||| || Sbjct 378108 ACCATCGACAACGTCAAGCAGAAGATTCAGGACAAGGAGGGCATCCCGCCTGACCAGCAG 378167 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || ||||||||||| |||||| | || || || | || | | || |||||| || Sbjct 378168 CGCCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTCTCGGACTACAACATC 378227 Query 206353 CAGAAAGAGTCTACTCTTCAC 206373 ||||| ||||| ||||| ||| Sbjct 378228 CAGAAGGAGTCGACTCTGCAC 378248 Score = 84.2 bits (92), Expect = 5e-11 Identities = 132/189 (70%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || ||||| || || || ||||| | || ||||| || ||||| |||| Sbjct 378288 AAGACCCTCACCGGCAAGACCATCACCCTCGAGGTGGAGTCGTCGGACACCATCGACAAC 378347 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||||| |||||||| || || || || || ||| ||| || | || |||||| Sbjct 378348 GTCAAGCAGAAGATTCAGGACAAGGAGGGCATCCCGCCTGACCAGCAGCGCCTCATCTTC 378407 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||| |||||| | || || || | || | | || |||||| ||||||| ||||| Sbjct 378408 GCCGGCAAGCAGCTCGAGGACGGCCGCACCCTCTCGGACTACAACATCCAGAAGGAGTCG 378467 Query 206365 ACTCTTCAC 206373 ||||| ||| Sbjct 378468 ACTCTGCAC 378476 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181817362748067