Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Linderina_20pennispora_20[genbank_20GCA_5F002104995.1_202017-04-20] 227 sequences; 26,202,545 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq162 123 3e-23 seq217 84.2 3e-11 >seq162 Length=1352108 Score = 123 bits (136), Expect = 3e-23 Identities = 566/886 (64%), Gaps = 29/886 (3%) Strand=Plus/Plus Query 111218 TTGACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAG-CCGTCTCATCCTTATC 111276 |||||| || || || || || || |||| ||||| |||| || ||| || Sbjct 1303507 TTGACAAACGACGGCAGCGCAATCGACGCCAGGTTGCACACAGGCCACCTCGTCGGGGCT 1303566 Query 111277 TGTGTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTG 111336 | |||||| | || ||||| || | ||| || | ||| ||||| || | |||| || Sbjct 1303567 CGAGTACTCGACGATCTCTGTGCACAGGTTCGAGCACTTGATCGTGCCGAGGTTCTGCTG 1303626 Query 111337 GTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTG 111396 ||| ||| |||||| ||||||||||| |||||| | || |||||||||| |||| Sbjct 1303627 GTTCGACTTGCGGTTGCATGCATCCTTGTACAGCATGAACGGGTTCCCCGTCTCGATCTG 1303686 Query 111397 TGATTTGAGAATAGCCTTCCAAA-CATCGGCG----GCTGGTACAATGGCGTTGGCCCGT 111451 | | || || || | ||| | | || | | | |||| | ||| ||| | Sbjct 1303687 CGCGTCCAGGATCGCATACCACAGCTTCTGTGCGTCGATGGTCGA---GCGC--GCCAGG 1303741 Query 111452 CCCTCCGC---CTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAG 111508 || || ||||||||| || || ||||| |||||||| || ||| | | || Sbjct 1303742 CCAGGCGTGTTCTCGTACTTGGTATACAGGGCCTCAAACTCATCGCCCCACACCTCCTGC 1303801 Query 111509 AGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCTTCCTCAACCCGCTTC 111568 | || ||||||| || || ||||| || ||||| | || || | || |||||| Sbjct 1303802 ATGCCGGGTGCCTCGTGCGGGCAGAACAGCGACCACTTGCCGCCGGCAATGACGCGCTTC 1303861 Query 111569 ATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCA 111628 ||||| || || || |||||||| | | || || || | ||| |||| || | Sbjct 1303862 ATGAACAGATCCGGGATCCACAGCGCATAGAACAGGTCGCGGGCCCGCACCTCCTCCTTG 1303921 Query 111629 CCTTGGTTGAGTCGTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAG 111688 || ||||| || | || |||||| | | | ||| || ||||| ||||| |||||| Sbjct 1303922 CCGTGGTTCTTGCGCAGATCCAGGAACGCAAACACATCGGCATGCCACGGCTCCAGATAG 1303981 Query 111689 ACTGCGATAGATCC------CTT-TCGACGCCCAGCTTGATTTACATAGCGCGCTGTGGC 111741 | || | | || ||| | | ||||| || | || || ||||| ||| Sbjct 1303982 ATCGCAAACGCACCTGGCCGCTTGTTGCCGCCC----TGGTCGACGTACCGCGCCGTGTT 1304037 Query 111742 GTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACCATTTGTCCCCCG-AATAC 111800 ||| || || || ||||| || | || || | || || || || ||| | ||| Sbjct 1304038 GTTGAACACACGCAGCATCGGCACAAGCCCGTTCGACGTGCCGTTGGTGCCCTGCAATGT 1304097 Query 111801 GAGATTTATTGGCTCTCACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGA 111860 || | || | | | | ||||| |||||| || ||||| ||| || | Sbjct 1304098 ATGAGCCCGTAGCCCGGATGTTGCTCACGTGCAGCCCAATGCCGCCAGCGTTCTTGGAAA 1304157 Query 111861 TTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGA 111920 | ||||| ||| || | || || | ||||| || | ||| ||| ||| |||| | Sbjct 1304158 TCTGCGCGCACACCTTCAGCGTGTCGTAGATGCCCTCGATGCTGTCATCCGACATGGCCA 1304217 Query 111921 TAAGGAAGCAACTGGACATCTGC-GGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTT 111979 ||||||||| || | |||| || | || || || | ||||| || || || | Sbjct 1304218 CAAGGAAGCACGACGAGAGCTGCGGGACGCGGCGTGCCCGAGTTGAACAGCGTCGGCGAC 1304277 Query 111980 GCGTGAATGAACATACCTTG-GGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTC 112038 ||||| |||| | || ||| ||||| || ||| ||||| | | | |||||||| Sbjct 1304278 GCGTGCGTGAAGA-ACTTTGACGACATGAGGTTGTACGTCTCGATCGCCGCGTCAATGTC 1304336 Query 112039 TTCCCCGTGGATGCCGATTGCGACCCGCATGAACATGTACTGTGGG 112084 ||||||||||| | | || ||||| | || || ||| ||| Sbjct 1304337 CGAGCCGTGGATGCCCAGGGACACGCGCATCACCAGGTGCTGCGGG 1304382 >seq217 Length=908848 Score = 84.2 bits (92), Expect = 3e-11 Identities = 116/160 (73%), Gaps = 2/160 (1%) Strand=Plus/Plus Query 122658 GGCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACC 122717 |||||| ||| ||| || ||||| || ||| | || || || || |||||| || || Sbjct 400063 GGCAAAGTCCGTGTGCAGGCCCTCGTCGCGGCAGATCAGCTCGTTCGAGAAGGTCAGTCC 400122 Query 122718 TGGCATGAGACCCCGCTTCTTCAACCAATAAATAG-CGCAGAATGACCCGGAGAAGAAGA 122776 ||||| || || |||||||| | ||| | || | |||| || || || |||||||||| Sbjct 400123 AGGCATCAGGCCGCGCTTCTTGAGCCAGAAGATCGACGCA-AACGAGCCCGAGAAGAAGA 400181 Query 122777 TACCCTCCACACACGCAAACGCAAAAAGGCGTTCGGCGAA 122816 | ||||| || |||||| || | ||||| || |||| Sbjct 400182 TGCCCTCGACCGCCGCAAAGGCCACCAGGCGCACGCCGAA 400221 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628030217959200