Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Linderina_20pennispora_20[genbank_20GCA_5F002104995.1_202017-04-20] 227 sequences; 26,202,545 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq224 89.7 4e-13 seq57 89.7 4e-13 >seq224 Length=36005 Score = 89.7 bits (98), Expect = 4e-13 Identities = 111/146 (76%), Gaps = 6/146 (4%) Strand=Plus/Plus Query 52765 AGATGGGCGACAAGTTTGCGTCGTT-CACGGCGCAAAAGGGGACGTGCGG-AGC-CGTCC 52821 ||||||||||||||||||||||| |||||| || ||||| || || | | ||| | Sbjct 29851 AGATGGGCGACAAGTTTGCGTCGCGACACGGC-CAGAAGGGCACTATTGGCATCACGTAC 29909 Query 52822 TGACCCAGGAGGACATGCCCTTCGACAAGGACGGGGTGGTGCCCGACCTCATCATCAACC 52881 | || ||||||||||| ||| || || |||||||||||| |||||||||||| Sbjct 29910 CGCACC--GAGGACATGCCGTTCTCGGCCGAGGGCGTGGTGCCCGACATCATCATCAACC 29967 Query 52882 CCCACGCCTTTCCCTCCAGGATGACC 52907 | |||||| |||| || | |||||| Sbjct 29968 CGCACGCCATTCCGTCGCGTATGACC 29993 >seq57 Length=497762 Score = 89.7 bits (98), Expect = 4e-13 Identities = 111/146 (76%), Gaps = 6/146 (4%) Strand=Plus/Plus Query 52765 AGATGGGCGACAAGTTTGCGTCGTT-CACGGCGCAAAAGGGGACGTGCGG-AGC-CGTCC 52821 ||||||||||||||||||||||| |||||| || ||||| || || | | ||| | Sbjct 209414 AGATGGGCGACAAGTTTGCGTCGCGACACGGC-CAGAAGGGCACTATTGGCATCACGTAC 209472 Query 52822 TGACCCAGGAGGACATGCCCTTCGACAAGGACGGGGTGGTGCCCGACCTCATCATCAACC 52881 | || ||||||||||| ||| || || |||||||||||| |||||||||||| Sbjct 209473 CGCACC--GAGGACATGCCGTTCTCGGCCGAGGGCGTGGTGCCCGACATCATCATCAACC 209530 Query 52882 CCCACGCCTTTCCCTCCAGGATGACC 52907 | |||||| |||| || | |||||| Sbjct 209531 CGCACGCCATTCCGTCGCGTATGACC 209556 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406309275916884