Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Linderina_20pennispora_20[genbank_20GCA_5F002104995.1_202017-04-20] 227 sequences; 26,202,545 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq2 102 5e-17 seq153 96.9 2e-15 seq155 93.3 3e-14 seq1 93.3 3e-14 seq151 82.4 5e-11 >seq2 Length=801100 Score = 102 bits (112), Expect = 5e-17 Identities = 156/220 (71%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 || || | |||||| || ||||| |||||| || ||||| || || || || || || Sbjct 378262 AGGCGAAGCACCAAGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGG 378203 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 |||| || || || || ||||| || || | ||||| ||||| ||||| | |||||| Sbjct 378202 CCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCAGGCGGGATGCCCTCC 378143 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 ||||| ||||| || || ||| | || ||||| |||||| || | ||| Sbjct 378142 TTGTCCTGAATCTTCTG-CTTGACGTTGTCGATGGTGTCCGACGACTCCACCTCGAGGGT 378084 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 || || || ||||| | || |||||||||||||||||| Sbjct 378083 GATAGTCTTGCCGGTGAGGGTCTTCACAAAAATCTGCATG 378044 Score = 96.9 bits (106), Expect = 2e-15 Identities = 162/232 (70%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 34476 GTCGCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATC 34535 || |||||| | || || | ||||| || ||||| |||||| || ||||| || || Sbjct 378731 GTTGCCGCCGCGCAGGCGGAGCACCAGGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTC 378672 Query 34536 TGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGG 34595 || || || || |||| || || || || ||||| || || | ||||| ||||| || Sbjct 378671 CGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCAGG 378612 Query 34596 CGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCT 34654 ||| | ||||||||||| ||||| || || ||| | || ||||| || Sbjct 378611 CGGGATGCCCTCCTTGTCCTGAATCTTCTG-CTTGACGTTGTCGATGGTGTCCGACGACT 378553 Query 34655 CCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||| || | ||| || || || ||||| | || ||||| ||||||||||| Sbjct 378552 CCACCTCGAGGGTGATAGTCTTGCCGGTGAGGGTCTTCACGAAAATCTGCAT 378501 Score = 95.1 bits (104), Expect = 8e-15 Identities = 154/219 (70%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 || || | |||||| || ||||| |||||| || ||||| || || || || || || Sbjct 378490 AGGCGAAGCACCAAGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGG 378431 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 |||| || || || || ||||| || || | ||||| ||||| ||||| | |||||| Sbjct 378430 CCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCAGGCGGGATGCCCTCC 378371 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 ||||| ||||| || || ||| | || ||||| |||||| || | ||| Sbjct 378370 TTGTCCTGAATCTTCTG-CTTGACGTTGTCGATGGTGTCCGACGACTCCACCTCGAGGGT 378312 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || || ||||| | || ||||| ||||||||||| Sbjct 378311 GATGGTCTTGCCGGTGAGGGTCTTCACGAAAATCTGCAT 378273 >seq153 Length=77323 Score = 96.9 bits (106), Expect = 2e-15 Identities = 162/232 (70%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 34476 GTCGCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATC 34535 || |||||| | || || | ||||| || ||||| |||||| || ||||| || || Sbjct 48738 GTTGCCGCCGCGCAGGCGAAGCACCAGGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTC 48679 Query 34536 TGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGG 34595 || || || || |||| || || || || ||||| || || | ||||| ||||| || Sbjct 48678 CGAGAGAGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCAGG 48619 Query 34596 CGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAA-AATTGTGTCTTCGCTCT 34654 ||| | || |||||||| ||||| || || | || | ||| ||||| || Sbjct 48618 CGGGATGCCTTCCTTGTCCTGAATCTTCTGCTTGA-CGTTGTCAATGGTGTCCGACGACT 48560 Query 34655 CCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||| || | ||| || || || ||||| | || ||||| ||||||||||| Sbjct 48559 CCACCTCGAGGGTGATAGTCTTGCCGGTGAGGGTCTTCACGAAAATCTGCAT 48508 Score = 87.8 bits (96), Expect = 1e-12 Identities = 153/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 || || | ||||| || ||||| |||||| || ||||| || || || || || || Sbjct 48269 AGGCGGAGCACCAGGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGG 48210 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | || || || || || ||||| || || | ||||| ||||| ||||| | || ||| Sbjct 48209 CCATCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCAGGCGGGATGCCTTCC 48150 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGATAAA-ATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 ||||| ||||| || || | || | || ||||| |||||| || | ||| Sbjct 48149 TTGTCCTGAATCTTCTGCTTGA-CGTTGTCGATGGTGTCCGACGACTCCACCTCAAGGGT 48091 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 || || || ||||| | || |||||||||||||||||| Sbjct 48090 GATAGTCTTGCCGGTGAGGGTCTTCACAAAAATCTGCATG 48051 >seq155 Length=76293 Score = 93.3 bits (102), Expect = 3e-14 Identities = 154/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 || || | ||||| || || || |||||| || ||||| || || ||||| || || Sbjct 26923 AGGCGGAGCACCAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGG 26864 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 |||| || || || || ||||| || || | ||||| ||||| || || | |||||| Sbjct 26863 CCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCAGGGGGGATACCCTCC 26804 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGATA-AAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 ||||| |||||| || |||||| || || ||||| |||||| || | ||| Sbjct 26803 TTGTCCTGGATCTTCTG-CTTAACGTTATCGATGGTGTCGGAAGACTCCACCTCGAGGGT 26745 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 || || || || || | || || || |||||||||||| Sbjct 26744 GATGGTCTTGCCCGTCAGGGTCTTAACGAAAATCTGCATG 26705 >seq1 Length=3302357 Score = 93.3 bits (102), Expect = 3e-14 Identities = 154/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 || || | ||||| || || || |||||| || ||||| || || ||||| || || Sbjct 872077 AGGCGGAGCACCAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGG 872018 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 |||| || || || || ||||| || || | ||||| ||||| || || | |||||| Sbjct 872017 CCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCAGGGGGGATACCCTCC 871958 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGATA-AAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 ||||| |||||| || |||||| || || ||||| |||||| || | ||| Sbjct 871957 TTGTCCTGGATCTTCTG-CTTAACGTTATCGATGGTGTCGGAAGACTCCACCTCGAGGGT 871899 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 || || || || || | || || || |||||||||||| Sbjct 871898 GATGGTCTTGCCCGTCAGGGTCTTAACGAAAATCTGCATG 871859 >seq151 Length=1709611 Score = 82.4 bits (90), Expect = 5e-11 Identities = 136/194 (70%), Gaps = 2/194 (1%) Strand=Plus/Minus Query 34515 CTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAA 34574 |||||| || ||||| || || ||||| || || |||| || || || || ||||| || Sbjct 449749 CTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAA 449690 Query 34575 TATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGA 34634 || | ||||| ||||| || || | ||||||||||| |||||| || || ||| Sbjct 449689 GATGAGGCGCTGCTGGTCAGGGGGAATGCCCTCCTTGTCCTGGATCTTCTG-CTTGACGT 449631 Query 34635 T-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCA 34693 | || ||||| |||||| || | ||| || || || || || | || || | Sbjct 449630 TGTCGATGGTGTCCGACGACTCCACCTCAAGGGTGATGGTCTTGCCCGTAAGGGTCTTGA 449571 Query 34694 CAAAAATCTGCATG 34707 | |||||||||||| Sbjct 449570 CGAAAATCTGCATG 449557 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314728729280891