Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Linderina_20pennispora_20[genbank_20GCA_5F002104995.1_202017-04-20] 227 sequences; 26,202,545 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq2 140 3e-28 seq153 138 1e-27 seq155 123 2e-23 seq151 123 2e-23 seq1 123 2e-23 >seq2 Length=801100 Score = 140 bits (154), Expect = 3e-28 Identities = 170/232 (73%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 26986 CCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGT 27045 |||||||||| ||||| || || || ||||||||| |||| || || || ||||| ||| Sbjct 378043 CCATGCAGATTTTTGTGAAGACCCTCACCGGCAAGACTATCACCCTCGAGGTGGAGTCGT 378102 Query 27046 CCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATC 27105 | ||| | || || | ||||| || || ||||| ||||| || ||||| || || || | Sbjct 378103 CGGACACCATCGACAACGTCAAGCAGAAGATTCAGGACAAGGAGGGCATCCCGCCTGACC 378162 Query 27106 AACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACA 27165 | ||||| | || | ||||||||| || | || ||| | ||| | || || |||| Sbjct 378163 AGCAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTCTCGGACTACA 378222 Query 27166 ACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||| || ||||||||||| | || ||||| | || |||| ||||| || Sbjct 378223 ACATCCAGAAGGAGTCGACTCTGCACTTGGTGCTTCGCCTGCGCGGTGGTAT 378274 Score = 127 bits (140), Expect = 2e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || || ||||||||| | || || || || ||||| |||| Sbjct 378273 ATGCAGATTTTCGTGAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTGGAGTCGTCG 378332 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | ||||| || || ||||| ||||| || ||||| || || || || Sbjct 378333 GACACCATCGACAACGTCAAGCAGAAGATTCAGGACAAGGAGGGCATCCCGCCTGACCAG 378392 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||| | || | ||||||||| || | || ||| | ||| | || || |||||| Sbjct 378393 CAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTCTCGGACTACAAC 378452 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || ||||||||||| | || ||||| | || |||| ||||| || Sbjct 378453 ATCCAGAAGGAGTCGACTCTGCACTTGGTGCTTCGCCTGCGCGGTGGTAT 378502 Score = 125 bits (138), Expect = 6e-24 Identities = 165/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || || ||||||||| |||| || || || ||||| |||| Sbjct 378501 ATGCAGATTTTCGTGAAGACCCTCACCGGCAAGACTATCACCCTCGAGGTGGAGTCGTCG 378560 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | ||||| || || ||||| ||||| || ||||| || || || || Sbjct 378561 GACACCATCGACAACGTCAAGCAGAAGATTCAGGACAAGGAGGGCATCCCGCCTGACCAG 378620 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||| | || | ||||||||| || | || ||| | ||| | || || |||||| Sbjct 378621 CAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTCTCGGACTACAAC 378680 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCA 27216 || || ||||||||||| | || |||| | || |||| || |||| Sbjct 378681 ATCCAGAAGGAGTCGACTCTGCACCTGGTGCTCCGCCTGCGCGGCGGCA 378729 >seq153 Length=77323 Score = 138 bits (152), Expect = 1e-27 Identities = 169/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| ||||| || || || ||||||||| |||| || ||||| ||||| |||| Sbjct 48051 CATGCAGATTTTTGTGAAGACCCTCACCGGCAAGACTATCACCCTTGAGGTGGAGTCGTC 48110 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | || || | ||||| || || ||||| ||||| |||||||| || || || || Sbjct 48111 GGACACCATCGACAACGTCAAGCAGAAGATTCAGGACAAGGAAGGCATCCCGCCTGACCA 48170 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||||| | || | ||||||||| || | || || | ||| | || || ||||| Sbjct 48171 GCAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGCACCCTCTCGGACTACAA 48230 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||| || ||||||||||| | || |||| | || |||| ||||| || Sbjct 48231 CATCCAGAAGGAGTCGACTCTGCACCTGGTGCTCCGCCTGCGCGGTGGTAT 48281 Score = 129 bits (142), Expect = 5e-25 Identities = 166/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || || ||||||||| |||| || || || ||||| |||| Sbjct 48508 ATGCAGATTTTCGTGAAGACCCTCACCGGCAAGACTATCACCCTCGAGGTGGAGTCGTCG 48567 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | ||||| || || ||||| ||||| |||||||| || || || || Sbjct 48568 GACACCATTGACAACGTCAAGCAGAAGATTCAGGACAAGGAAGGCATCCCGCCTGACCAG 48627 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||| | || | ||||||||| || | || ||| | || | || || |||||| Sbjct 48628 CAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACTCTCTCGGACTACAAC 48687 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCA 27216 || || ||||||||||| | || |||| | || |||| || |||| Sbjct 48688 ATCCAGAAGGAGTCGACTCTGCACCTGGTGCTTCGCCTGCGCGGCGGCA 48736 Score = 122 bits (134), Expect = 8e-23 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || || || |||||| |||| || || || ||||| |||| Sbjct 48280 ATGCAGATTTTCGTGAAGACCCTCACTGGCAAGACTATCACCCTCGAGGTGGAGTCGTCG 48339 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || || | ||||| || || ||||| ||||| |||||||| || || || || Sbjct 48340 GATACCATCGACAACGTCAAGCAGAAGATTCAGGACAAGGAAGGCATCCCGCCTGACCAG 48399 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||| | || | ||||||||| || | || ||| | ||| | || || |||||| Sbjct 48400 CAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTCTCGGACTACAAC 48459 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || ||||||||||| | || |||| | || |||| ||||| || Sbjct 48460 ATCCAGAAGGAGTCGACTCTGCACCTGGTGCTCCGCCTGCGCGGTGGTAT 48509 >seq155 Length=76293 Score = 123 bits (136), Expect = 2e-23 Identities = 167/233 (72%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 26985 GCCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCG 27044 ||||||||||| || || || || ||||| |||||| | || || || || ||||| | Sbjct 26703 GCCATGCAGATTTTCGTTAAGACCCTGACGGGCAAGACCATCACCCTCGAGGTGGAGTCT 26762 Query 27045 TCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGAT 27104 |||||| | || || | || || || || || || ||||| || || || || || || Sbjct 26763 TCCGACACCATCGATAACGTTAAGCAGAAGATCCAGGACAAGGAGGGTATCCCCCCTGAC 26822 Query 27105 CAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTAC 27164 || ||||| | || | ||||||||| || | || ||| | ||| |||| || ||| Sbjct 26823 CAGCAGCGCCTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTTTCGGACTAC 26882 Query 27165 AACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||| || |||||||||||| | || |||| | || |||| ||||| || Sbjct 26883 AACATCCAGAAGGAGTCGACCCTTCACCTGGTGCTCCGCCTGCGTGGTGGTAT 26935 >seq151 Length=1709611 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || || || || || || |||||| | || || ||||| ||||| |||| Sbjct 449557 CATGCAGATTTTCGTCAAGACCCTTACGGGCAAGACCATCACCCTTGAGGTGGAGTCGTC 449616 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | || || | ||||| || || || || ||||| || ||||| || || || || Sbjct 449617 GGACACCATCGACAACGTCAAGCAGAAGATCCAGGACAAGGAGGGCATTCCCCCTGACCA 449676 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||||| | || | ||||||||| || | || ||| | ||| |||| || ||||| Sbjct 449677 GCAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTTTCGGACTACAA 449736 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 ||| || |||||||||||| | || | || | || |||| ||||| Sbjct 449737 CATCCAGAAGGAGTCGACCCTGCACCTCGTGCTCCGCCTGCGTGGTGG 449784 >seq1 Length=3302357 Score = 123 bits (136), Expect = 2e-23 Identities = 167/233 (72%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 26985 GCCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCG 27044 ||||||||||| || || || || ||||| |||||| | || || || || ||||| | Sbjct 871857 GCCATGCAGATTTTCGTTAAGACCCTGACGGGCAAGACCATCACCCTCGAGGTGGAGTCT 871916 Query 27045 TCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGAT 27104 |||||| | || || | || || || || || || ||||| || || || || || || Sbjct 871917 TCCGACACCATCGATAACGTTAAGCAGAAGATCCAGGACAAGGAGGGTATCCCCCCTGAC 871976 Query 27105 CAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTAC 27164 || ||||| | || | ||||||||| || | || ||| | ||| |||| || ||| Sbjct 871977 CAGCAGCGCCTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTTTCGGACTAC 872036 Query 27165 AACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||| || |||||||||||| | || |||| | || |||| ||||| || Sbjct 872037 AACATCCAGAAGGAGTCGACCCTTCACCTGGTGCTCCGCCTGCGTGGTGGTAT 872089 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434917165919040