Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Linderina_20pennispora_20[genbank_20GCA_5F002104995.1_202017-04-20] 227 sequences; 26,202,545 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq155 93.3 4e-14 seq151 93.3 4e-14 seq1 93.3 4e-14 seq2 91.5 1e-13 seq153 82.4 7e-11 >seq155 Length=76293 Score = 93.3 bits (102), Expect = 4e-14 Identities = 150/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 39069 GCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTC 39128 ||| | ||||| || || || ||| || || || || || || | ||| || || | Sbjct 26921 GCGGAGCACCAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCC 26862 Query 39129 GTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTT 39188 ||| || ||||| ||||| || || || || ||||||||||| | ||| | | ||| || Sbjct 26861 GTCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCAGGGGGGATACCCTCCTT 26802 Query 39189 GTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGAT 39248 |||| ||| ||||| || | | | | || ||| |||||||| || | ||||| Sbjct 26801 GTCCTGGATCTTCTGCTTAACGTTATCGATGGTGTCGGAAGACTCCACCTCGAGGGTGAT 26742 Query 39249 ACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | || |||||||| || ||||| || || ||||| Sbjct 26741 GGTCTTGCCCGTCAGGGTCTTAACGAAAATCTGCAT 26706 >seq151 Length=1709611 Score = 93.3 bits (102), Expect = 4e-14 Identities = 138/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 39093 CTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAA 39152 ||| || || || || || || | ||| || || |||| || ||||| ||||| || || Sbjct 449749 CTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAA 449690 Query 39153 TATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGT 39212 || || ||||||||||| | ||| | || ||| |||||| ||| ||||| |||| ||| Sbjct 449689 GATGAGGCGCTGCTGGTCAGGGGGAATGCCCTCCTTGTCCTGGATCTTCTGCTTGA-CGT 449631 Query 39213 CG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAA 39271 | | | || || ||||||||| || | ||||| | || ||||| || || || | Sbjct 449630 TGTCGATGGTGTCCGACGACTCCACCTCAAGGGTGATGGTCTTGCCCGTAAGGGTCTTGA 449571 Query 39272 CAAAGATTTGCAT 39284 | || || ||||| Sbjct 449570 CGAAAATCTGCAT 449558 >seq1 Length=3302357 Score = 93.3 bits (102), Expect = 4e-14 Identities = 150/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 39069 GCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTC 39128 ||| | ||||| || || || ||| || || || || || || | ||| || || | Sbjct 872075 GCGGAGCACCAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCC 872016 Query 39129 GTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTT 39188 ||| || ||||| ||||| || || || || ||||||||||| | ||| | | ||| || Sbjct 872015 GTCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCAGGGGGGATACCCTCCTT 871956 Query 39189 GTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGAT 39248 |||| ||| ||||| || | | | | || ||| |||||||| || | ||||| Sbjct 871955 GTCCTGGATCTTCTGCTTAACGTTATCGATGGTGTCGGAAGACTCCACCTCGAGGGTGAT 871896 Query 39249 ACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | || |||||||| || ||||| || || ||||| Sbjct 871895 GGTCTTGCCCGTCAGGGTCTTAACGAAAATCTGCAT 871860 >seq2 Length=801100 Score = 91.5 bits (100), Expect = 1e-13 Identities = 152/217 (70%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 39069 GCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTC 39128 ||| | |||||| || || || ||| || || || || || || | || || || | Sbjct 378260 GCGAAGCACCAAGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCC 378201 Query 39129 GTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTT 39188 ||| || ||||| ||||| || || || || ||||||||||| | || | || ||| || Sbjct 378200 GTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCAGGCGGGATGCCCTCCTT 378141 Query 39189 GTCCATGATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGA 39247 |||| || ||||| |||| ||| | | | || || ||||||||| || | |||| Sbjct 378140 GTCCTGAATCTTCTGCTTGA-CGTTGTCGATGGTGTCCGACGACTCCACCTCGAGGGTGA 378082 Query 39248 TACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || | || || || || || || ||||| || ||||| Sbjct 378081 TAGTCTTGCCGGTGAGGGTCTTCACAAAAATCTGCAT 378045 Score = 82.4 bits (90), Expect = 7e-11 Identities = 150/217 (69%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 39069 GCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTC 39128 ||| | |||||| || || || ||| || || || || || || | || || || | Sbjct 378488 GCGAAGCACCAAGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCC 378429 Query 39129 GTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTT 39188 ||| || ||||| ||||| || || || || ||||||||||| | || | || ||| || Sbjct 378428 GTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCAGGCGGGATGCCCTCCTT 378369 Query 39189 GTCCATGATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGA 39247 |||| || ||||| |||| ||| | | | || || ||||||||| || | |||| Sbjct 378368 GTCCTGAATCTTCTGCTTGA-CGTTGTCGATGGTGTCCGACGACTCCACCTCGAGGGTGA 378310 Query 39248 TACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | | || || || || || || || || || ||||| Sbjct 378309 TGGTCTTGCCGGTGAGGGTCTTCACGAAAATCTGCAT 378273 Score = 82.4 bits (90), Expect = 7e-11 Identities = 150/217 (69%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 39069 GCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTC 39128 ||| | ||||| || || || ||| || || || || || || | || || || | Sbjct 378716 GCGGAGCACCAGGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCC 378657 Query 39129 GTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTT 39188 ||| || ||||| ||||| || || || || ||||||||||| | || | || ||| || Sbjct 378656 GTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCAGGCGGGATGCCCTCCTT 378597 Query 39189 GTCCATGATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGA 39247 |||| || ||||| |||| ||| | | | || || ||||||||| || | |||| Sbjct 378596 GTCCTGAATCTTCTGCTTGA-CGTTGTCGATGGTGTCCGACGACTCCACCTCGAGGGTGA 378538 Query 39248 TACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || | || || || || || || || || || ||||| Sbjct 378537 TAGTCTTGCCGGTGAGGGTCTTCACGAAAATCTGCAT 378501 >seq153 Length=77323 Score = 82.4 bits (90), Expect = 7e-11 Identities = 150/217 (69%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 39069 GCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTC 39128 ||| | ||||| || || || ||| || || || || || || | || || || | Sbjct 48495 GCGGAGCACCAGGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCC 48436 Query 39129 GTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTT 39188 ||| || ||||| ||||| || || || || ||||||||||| | || | || || || Sbjct 48435 GTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCAGGCGGGATGCCTTCCTT 48376 Query 39189 GTCCATGATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGA 39247 |||| || ||||| |||| ||| | | | ||||| ||||||||| || | |||| Sbjct 48375 GTCCTGAATCTTCTGCTTGA-CGTTGTCGATGGTATCCGACGACTCCACCTCGAGGGTGA 48317 Query 39248 TACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || | || || || || || || || || || ||||| Sbjct 48316 TAGTCTTGCCAGTGAGGGTCTTCACGAAAATCTGCAT 48280 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429544411635251