Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lobosporangium_20transversale_20[genbank_20GCA_5F002105155.1_202017- 04-20] 138 sequences; 42,768,949 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq57 107 4e-18 seq24 104 5e-17 seq62 102 2e-16 >seq57 Length=574579 Score = 107 bits (118), Expect = 4e-18 Identities = 313/471 (66%), Gaps = 12/471 (3%) Strand=Plus/Plus Query 230173 TTTGCCGAGCGTCTCGTCGCCTGGGTGTGTGTTGAAGGTATTCTGTTTTCCGGGAGTTTC 230232 ||||| || ||| | ||||||| | ||||||||| || | || || || ||| Sbjct 520918 TTTGCTGAACGTTTGGTCGCCTTTGCTGCTGTTGAAGGCATCTTCTTCTCTGGCGCATTC 520977 Query 230233 TGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAACGAG 230292 ||||||||||||| || ||| | |||||||| || | || ||||| Sbjct 520978 GCTTCCATCTTTTGGCTCAAAAAGCGTGGTCTCATGCCTGGTCTGACCTTCTCCAACGAA 521037 Query 230293 TTCATCAGTCGCGACGAGGGTCTCCATCAACAGTTCGGCGAGCTTAT-GTATTCAAAGCT 230351 ||||| || || ||||||||||| | |||| | |||||| || ||| | | Sbjct 521038 CTCATCTCGCGTGATGAGGGTCTCCACACTGATTTCGCCT-GCTTATTGTTCTCATTGTT 521096 Query 230352 CCAGAACAAG--CT-ACCATTCGAGACG-GTCAAACAAATCATTACAGAAGCAGTTGAAA 230407 ||| | | || |||| | ||| ||||| ||||||||||| || |||| | Sbjct 521097 G-AGATCTCGTCCTGACCAA---AAACGTGTCAATGCTATCATTACAGAGGCTGTTGTGA 521152 Query 230408 ACGAAAAGGAGTTCATTTGTGACGCTATTCCATGTCGCCTT-ATTGGCATGAACGCTGAA 230466 |||| | |||||| | || ||| | || ||| || ||||| ||||| || | Sbjct 521153 TCGAACAAGAGTTCTTGACCGATGCTCTCCC-TGTGATGTTGATTGGTATGAATGCCAAG 521211 Query 230467 CTTATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCACTTGGTTACGAG 230526 | ||| ||| ||||| || || || ||||| || | || || || || || || Sbjct 521212 TTGATGAAACAATACATTGAGTTTGTGGCCGATCGTCTCTTGGTCGCGCTCGGAAACCCA 521271 Query 230527 AAAGTGTACAACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTCGCTTCAAGGGAAG 230586 ||| ||||| | |||| || |||| |||||||| | || || ||||| || ||| Sbjct 521272 AAACATTACAATGTTGAGAATCCTTTTGACTTTATGGACTTGATCTCTCTTCAGGGCAAG 521331 Query 230587 ACCAACTTCTTCGAAAAGCGTGTCAGTGACTATCAGAGGCCTGGTGTGATG 230637 ||||||||||| || ||||||||| || || |||| | ||||||| ||| Sbjct 521332 ACCAACTTCTTTGAGAAGCGTGTCTCGGATTACCAGAAGGCTGGTGTCATG 521382 >seq24 Length=886838 Score = 104 bits (114), Expect = 5e-17 Identities = 184/265 (69%), Gaps = 5/265 (2%) Strand=Plus/Minus Query 319401 CTTCACGAACTCGGACAGATTTCCCTTGTACTTCTTCAGCTTTAGGTTAGGTTCGTAATG 319460 ||| || |||||||| ||||| ||||| ||| |||||||||| || | |||||||| Sbjct 374835 CTTGACAAACTCGGAAAGATTACCCTTATACATCTTCAGCTTC---TTGCGCTCGTAATG 374779 Query 319461 GATAATAGAGGTGCAAACAGCGTCGAGGAACCCGGAGTCGTGTGACACAATCACGCACGA 319520 | ||| |||||| ||| ||||||||| || ||||||||||| || || | | | Sbjct 374778 CAAAATGTTGGTGCACACATTGTCGAGGAATCCAGAGTCGTGTGAGACGATGATCGATGT 374719 Query 319521 AACGTCCTTAAGGTTGATCAGGTATTCAATCAACCACCTCACGTTAGACACAGAAAGATG 319580 || | | || |||| |||||||| || ||| | | || | ||| | || Sbjct 374718 GACATTGGTCTGGCTGATGAGGTATTCTTCCAGCCATTTGATATTGGCGACATCCAAGTG 374659 Query 319581 GTTGGTCGGCTCGT-CAAGAAGCAGTAGCTTTGCGTTCAGGAGCATTGCACGTGCAAGAG 319639 ||| || || |||| ||| ||| || | | ||||||| | ||| || || || | Sbjct 374658 GTTAGTAGGTTCGTCCAACAAG-AGAATATCAGCGTTCATTAACATGGCGCGGGCCAACT 374600 Query 319640 CGAGTTTCATTTTCCACCCTCCGGA 319664 |||| ||||| ||||| |||||||| Sbjct 374599 CGAGCTTCATCTTCCAACCTCCGGA 374575 >seq62 Length=1732855 Score = 102 bits (112), Expect = 2e-16 Identities = 642/1024 (63%), Gaps = 19/1024 (2%) Strand=Plus/Plus Query 319012 TAACGCCATTGGATATACTGGTTGGGTGTCATGTCAAGATGATCCTCGATGTGGTGGAAA 319071 |||||||| ||||||||| ||| || ||| |||| | || | |||| ||| |||||| Sbjct 526166 TAACGCCAGCGGATATACTCGTTAGGGGTCTTGTCCAAGTGTTGTTCGACGTGATGGAAA 526225 Query 319072 GCATGCTGTGCCACGTAAGCAAGACGCATATTTGGATGCTTCCAAACACTACCGATGGTG 319131 || ||||| || || ||||||| ||| | || || ||||| ||| |||| | | Sbjct 526226 GCGTGCTGGGCAACATAAGCAACACGAACGTTAGGGTGCTTGGTAACCGTACCACCAGAG 526285 Query 319132 GCTTCCATTTGTCCCGTGAGCACCTTAATGAGGGTGCTTTTCCCCGCACCGTTTTCGCCC 319191 | | | || || | ||||| ||||| || || || |||||||| || Sbjct 526286 GGAATAGTCTCGCCAGTCAAGACCTTGATGAGAGTCGACTTTCCTGCACCGTTGGGTCCA 526345 Query 319192 ACCACACCGATCCTGGAGTTCAGCGATACCTGGGCATTCACGTTGTCAAAGATTAGTTTT 319251 || ||| | | | ||||| ||||| || ||| | || |||| | | | | ||| Sbjct 526346 ACGACAGCAACACGAGAGTTAAGCGACACTTGGCAAGACATGTTGGTGATGGTCAACTTT 526405 Query 319252 TCCGTACCCGGATACTTGAACCCCACACCGCGTAGCTTCATGATGGCACGGTCCTTCGAA 319311 | || || || ||| | | | ||||| | | ||| ||||| || Sbjct 526406 GTGCTGCCGGGGTAAGCGAAATCAATGTTTTGGAGCTTGACAAGGGCCTTATCCTTGGAC 526465 Query 319312 GTGATACCCTCGAGGAACCCGGGCTCGGGGAACTTCCACGTGGTCTTCGTCTCGGTAAGG 319371 ||| ||| || | ||| ||||||||||||| ||| | | | | | | | Sbjct 526466 TTGACACCATCCAAGAAACCGGGCTCGGGGAGCTTGAAGGCAATGGGAGAAGCAGACAAC 526525 Query 319372 GCGTAGTA--ACTCGC--TGATTCGGGACGCTTCTTCACGAACTCGGACAGATTTCCCTT 319427 | ||||| ||| || ||| || || | || ||||||| ||||| || ||||| Sbjct 526526 TCATAGTAGGACTTGCCCTGAG--GGTAC--TGCTCAACGAACTTGGACAAGTTACCCTT 526581 Query 319428 GTACTTCTTCAGCTTTAGGTTAGGTTCGTAATGGATAATAGAGGTGCAAACAGCGTCGAG 319487 ||||||||| ||||| |||| || ||||| |||||| ||||| || | || | Sbjct 526582 GTACTTCTTGAGCTTACGGTTC---TCATAATGAATAATACCAGTGCAGACGGAATCCAA 526638 Query 319488 GAACCCGGAGTCGTGTGACACAATCACGCACGAAACGTCCTTAAGGTTGATCAGGTATTC 319547 ||| || |||||||| || || |||| | | | || | |||| | | ||||| | Sbjct 526639 GAAACCAGAGTCGTGAGAAACGATCATGGAAGTGACATTGGTAAGAGAGGTAAGGTAGTT 526698 Query 319548 AATCAACCACCTCACGTTAGACACAGAAAGATGGTTGGTCGGCTCGTCAAGAAGCAGTAG 319607 |||||| || || | ||| | |||||||| |||||||| | | || | Sbjct 526699 CTGCAACCAGGCGACATTGGTAACATCCAAGTGGTTGGTAGGCTCGTCCAACAACAAGAT 526758 Query 319608 CTTTGCGTTCAGGAGCATTGCACGTGCAAGAGCGAGTTTCATTTTCCACCCTCCGGAAAG 319667 | ||||||| | ||| ||||| || | | | ||||| ||||| || || || || Sbjct 526759 ATCAGCGTTCATCAACATGGCACGGGCCAATTCCAACTTCATCTTCCAACCACCAGAGAG 526818 Query 319668 AGTGTTAATTGGGGCAGATTGGCGCTCAATATCAAAGCCAACCGATTCTAGAGTAGTTAC 319727 || || | ||| ||| | || ||||| || || || || || || Sbjct 526819 AGATCCAACAGCCTGCTCTTGCTTCTCCTTGTCGAAGCCGACAGACTCAAGCATATCGAC 526878 Query 319728 GATCT-TTTCACGAGACCAAATGTTTTCCTTTACTTGTTCATCATTGGCAATGAAGTCAA 319786 | |||| | ||| ||| ||| | | || |||||| |||||| || Sbjct 526879 AACAGCTTTCTT---ATCAAG-GTT---CTTGATGTTCTCGTCATTGAAGATGAAGGTAA 526931 Query 319787 TGATAGCCGTGTTAGAATCGGACCCGTCGAGATCGTGTTCCACGTAAGCAGTTTTCAAAA 319846 ||| | | || || | | || | ||| || || | |||| | Sbjct 526932 TGACGGGAAGATCAGCTTCCTCAGCCTGAAGGTTGTGCTCGACAAAGACAGTGCGAAGTT 526991 Query 319847 CATCCGCAGAGGGGAACCCTTCAAGCTGGCCGTTCACAATAGCGCGCATCAGGGTTGATT 319906 |||| | |||||||| || ||||||||||| | |||| || ||||| || || || | Sbjct 526992 CATCGGGCGAGGGGAAGCCCTCAAGCTGGCCCTCAGCAATGGCACGCATGAGAGTCGACT 527051 Query 319907 TACCCGCCCCGTTTGGCCCACACAGACCGTAGCGGTTTCCGCGTTTCAGGTTGAACCGCG 319966 | || | || || || ||||| ||||| ||||| | ||||| ||||||| || | Sbjct 527052 TTCCGACACCATTGGGGCCACAAAGACCATAGCGCTGACCGCGGCGGAGGTTGAGGCGGG 527111 Query 319967 TGTTGTTCAGAAGAATTTTTCCACCATATGCCAGAGAAAATTCACAATCACACAGATCCT 320026 | ||||||| | || | |||||||| || ||||| || || || || || ||| || Sbjct 527112 TCTTGTTCAACAAGATCATACCACCATAAGCGAGAGAGAACTCGCAGTCGCAGAGAAGCT 527171 Query 320027 CACC 320030 |||| Sbjct 527172 CACC 527175 Score = 87.8 bits (96), Expect = 4e-12 Identities = 123/173 (71%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 319849 TCCGCAGAGGGGAACCCTTCAAGCTGGCCGTTCACAATAGCGCGCATCAGGGTTGATTTA 319908 || |||| ||||| || ||||||||||| | | || |||||||| || || ||||| Sbjct 139623 TCAGCAGGAGGGAAGCCCTCAAGCTGGCCATCAGCGATGGCGCGCATAAGTGTGGATTTG 139682 Query 319909 CCCGCCCCGTTTGGCCCACACAGACCGTAGCGGTTTCCGCGTTTCAGGTTGAACCGCGTG 319968 || | || || || || || || ||||| || | ||| || || || | || || Sbjct 139683 CCGACACCATTGGGGCCGCAGAGGCCGTAACGCTGTCCACGGCGAAGATTAAGACGAGTC 139742 Query 319969 TTGTTCAGAAGAATTTTTCCACCATATGCCAGAGAAAATTCACAATCACACAG 320021 ||||| || ||||| | |||||||| || || || || ||||| ||||| || Sbjct 139743 TTGTTGAGTAGAATCATACCACCATAAGCGAGGGAGAACTCACAGTCACAAAG 139795 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057822129634940