Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lobosporangium_20transversale_20[genbank_20GCA_5F002105155.1_202017- 04-20] 138 sequences; 42,768,949 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq47 251 8e-62 seq49 237 2e-57 seq57 114 2e-20 seq1 114 2e-20 >seq47 Length=818200 Score = 251 bits (278), Expect = 8e-62 Identities = 1282/2028 (63%), Gaps = 23/2028 (1%) Strand=Plus/Minus Query 52838 GTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTT 52897 || || ||||| ||||| ||||| || | || | ||||||| ||||| ||| Sbjct 306359 GTTCGAAGATAATACATCCCCGTCTTCAACCCCCGCTTCCATCCATAAAACGCCATCGAC 306300 Query 52898 GTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATG 52957 || | || |||| || ||| || |||||||||||||| |||||| |||||| || Sbjct 306299 GTCAACTTTCCATAATTCACATCCGCCATATGGATATTCATCGATTGAGATTGATCAATA 306240 Query 52958 AAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTT 53017 || || |||| ||| || ||||| | || | | |||||||| ||| ||||| | || Sbjct 306239 AATGCCCCCCGGTCCGCTGCCATATCAATTACCACCTTTTGTGAAATCTCCCACGTGGTC 306180 Query 53018 TTATAAACTCGCTTAATATCTTCTGGAAGGTTTGT-AT--TCTGAATAGATCCACCATCT 53074 || || | ||| | ||| || |||| | | || ||||||| ||||| ||| Sbjct 306179 TTGTACAGCGCCTTCAAATCATCCGGAATACTCGGGATCCTCTGAATCGATCCGTTCTCT 306120 Query 53075 ACCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGG 53134 | || |||| ||||| | | ||| ||||| | | |||| || | | | Sbjct 306119 GCAATGATCCGGTTCTTCAGTTGATCGTTCCACAGTCCCATCTCCACCAAGTCCTTCAAC 306060 Query 53135 AGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTG 53194 | |||||| || | || || ||||| | | |||| || ||||| |||||| | Sbjct 306059 ATCCACGGATTCACAATCTGGAACTCTCCCGCAAGCACTCGACGTGTGTAGATATTAGAG 306000 Query 53195 GTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATA 53254 ||||| || || | | | ||||| |||| || || | || || || || ||||| Sbjct 305999 GTATAGGGCTCGAAACATTCATTGAAACCCAGGATCTGTGAGGTCGAAGCCGTAGGCATC 305940 Query 53255 GGTGCCACCAATAAACTATTTCTAAGACCGTA-TGTTCTGATTTTATCTTTTAGAGGTTC 53313 ||||||||||| | || | | || | || | |||| | | || | || Sbjct 305939 GGTGCCACCAAGAGTGAGTTGCGCACTCCATGCTGCT-TGATACTGGCCCGGAGCGTATC 305881 Query 53314 CCAATTCCAAAGATCCGACGGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACT 53373 ||| | ||| ||||| || || || ||| | || || || Sbjct 305880 CCAGTCCCAGAGATCGGAGGGCGTTACCCCCCACATGTCCGGTTGCAAGATTCCCTTCGA 305821 Query 53374 GGCGTACGATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGC 53433 || || || |||| || || || | || |||| || ||| | ||||| | Sbjct 305820 AACGGGTGAGCCCTCATAGGTCTCATAAGTACCCTCCTCCTGAGCCATCTCACAGGATGA 305761 Query 53434 CTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAG 53493 || || || | | ||| ||||| ||||| |||| ||| || | | |||| || | Sbjct 305760 TTCCAAAGCCGCATGATAGATGGTCTCGAAAATCTGCTTGTTCAACTGACGTGCCTCGGG 305701 Query 53494 GCTATCAAATGG-ATA---ATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAA 53549 ||||| || || || | |||| || || |||| || || ||||| | Sbjct 305700 TGAGTCAAAGGGCATGCGCATCTTGATGAAT----GCATCCGCTAGACCCTGGACACCCA 305645 Query 53550 TACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAA 53609 ||| | ||| | ||| | ||| || || || || ||||||| |||||| || || Sbjct 305644 CACCCACAGGACGATGACGCTTGTTGGACCGCTCTGCCTCTGGAACAGGATAGTAGTTCT 305585 Query 53610 TATCTATAATTTTATTGAGGTTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAA 53669 ||| ||||| || || | ||| | | | || ||| || | | || | | Sbjct 305584 GATCAATAATCTTGTTCAAGTTGCGGGTCACGACCTTGGTGACCTGGTGAAGCATCTTGA 305525 Query 53670 AATCAAATTGTCCATCTATT-ACAAACATGTTCAATGCAATAGATGCCAGATTACAAACG 53728 | ||| | ||| |||| | ||| | || |||||| |||| ||||| || Sbjct 305524 AGTCATAC-GTCTGATTATTGATAAAAGTCGGCAGCGCAATACTGGCCAAGTTACAGACC 305466 Query 53729 GCTACCTCATTAGCATCCGCA-TATTGTATTATCTCAGTGCAAAGATTACTACACTTGAT 53787 ||||| || | | | | || |||| | ||||| || || | |||||| |||||||| Sbjct 305465 GCTACTTCGTCTGGA-CTGCTGTATTCAACAATCTCTGTACACAAATTACTGCACTTGAT 305407 Query 53788 GGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGG 53847 ||||| | || |||||||| || ||| || |||||||| ||||| ||| | || Sbjct 305406 CGTTCCAAGGTTCTGTTGATTCGATTTACGGTTGCAAGCATCCTTGTAAAGCATGTAAGG 305347 Query 53848 CGTACCAGTTTCAATCTGGGATTCTATAATCGCTTTCCAGACGACACGAGCCTTTATTAT 53907 |||||| || || |||||| || | ||| || | ||||| | ||||| || | Sbjct 305346 CGTACCGGTCTCGGTCTGGGCCTCCAGAATAGCATACCAGAGTTTCTGGGCCTTGATGGT 305287 Query 53908 AGATTTGTATCTCTTTTCTCTTTCGTATAGTGTATACAATCGTTCAAACTCGTCTCCCCA 53967 | | || | || ||| | ||| | | || || || || ||||| Sbjct 305286 CTTGCGGGCACGACCCTCACGCTCATATCGATGATAGAGTTCCTCGAATTCTTCGCCCCA 305227 Query 53968 AACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTT 54027 |||| | | |||||| || | ||||| | || ||| || ||| |||| Sbjct 305226 CACATCTTGAAGTCCAGGTGCCTCCGCAGGACAGAACAGACTCCAGTCAGCGTTTTCCTC 305167 Query 54028 CACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTAT 54086 | ||| |||| || |||||||| ||||| ||||| ||| || | ||| | | | Sbjct 305166 GATACGTCTCATGAACAGATCAGGGATCCAGAGAGC-ATAGAACAAATCACGAGCACGGG 305108 Query 54087 GTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACG 54146 ||||| ||||| || ||||| |||||| ||||| | | | ||| | |||||| | Sbjct 305107 TCTCCTCCTTTCCAGTGTTCTTGCGAAGATCCAGGAATTCAAAGACATCGGCATGCCAGG 305048 Query 54147 GTTCCAAGTATATGGTCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAG 54206 |||| | || |||| | | ||||| || ||||| || |||||||| | || | || Sbjct 305047 GTTCGAGATACATGGCAAAGGCACCAGGACGCTTGTTGCCGCCCTGATCAACATAACGAG 304988 Query 54207 CGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGG 54266 | || || || || || | | ||| ||||| | |||||||| || || || || | Sbjct 304987 CCGTATTGTTGTAGACACGAAGCATAGGAATCAACCCATTGGAATATCCGTTCGTTCCAG 304928 Query 54267 AGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGACCTATCCCCCCTGCCATTT 54326 || || || |||||||| || ||| ||||| || || || || ||| Sbjct 304927 CAATGTATGAACCCGACGCACGAATGTTGTGAATATTAAGACCAATGCCTCCAGCGGTTT 304868 Query 54327 TAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCA 54386 | ||||| | || || || | ||||||||||| ||||| || ||||||| ||| Sbjct 304867 TCGAGATCATGGCACAGGTCTTGAGGGTATCATAGATACCCTCGATCGAATCATCCTTCA 304808 Query 54387 T-GTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTA 54445 | || || ||||| || | ||||| || | ||| ||||| ||||| || | || Sbjct 304807 TCGTCAACAAGAAACAAGAT-GACATCTGAGGGCGAGGTGTTCCAGCATTGAAGAGCGTG 304749 Query 54446 GGAGAAGCGTGCGTAAACCATTTTTCAGAAA-GTAGATTGTACGTCTCGATAGCTGAGTC 54504 || ||||| || || || |||||||||| | ||| |||||| ||||| ||||| ||| Sbjct 304748 GGCGAAGCATGGGTGAAGTATTTTTCAGACATGTA-ATTGTAGGTCTCAATAGCCTTGTC 304690 Query 54505 TATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAAC 54564 | || | ||| || || || | ||||||||| ||||| ||||||||||| || | Sbjct 304689 CACATTATCTCCATGGATCCCGACCGAGACACGCATCAACATATGCTGAGGTCTCTCCGC 304630 Query 54565 GATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTT 54624 | |||| || || || | ||| || || | ||||| || ||||| || || Sbjct 304629 AACCTTGCCATTGATCCGGAGAAGGTAAGAGCGCTCAAGGGTTTTGAATCCAAAGTAATT 304570 Query 54625 GTATGAAAAGTCTCGTTCGTAAATAATAACTGAGTTGAGTTTATCCTTATATTTGTTAAC 54684 ||| ||||| || ||||| || || | |||||||| || || || |||| Sbjct 304569 GTAATTGAAGTCACGATCGTAGATGATTGCCGAGTTGAGGCGTTCTGCATTCTTCATAAC 304510 Query 54685 TACATCCATGGTAATACTTGAAATAATCGGAGAATGTTTCCCATTTTTAGGATTGACATA 54744 | ||| | || || || | | || || ||| | || || || | ||| Sbjct 304509 ATTGTTATAGGTTGTCTCGGAGATCATGGAGGCATTCTTGCCAGTCTTGGGGTTAATATA 304450 Query 54745 GTTAAATAAATCCTTCATCACTTCACTAAATAGtttttttGTTTCTTTGTGTAGATTTGA 54804 || | | ||| | | ||| | | || | || || || ||||| || ||||| || Sbjct 304449 CTTGTAGAGATCTTCGACCACCTGAGAGAAAACCTTCTTGGTCTCTTTATGAAGATTGGA 304390 Query 54805 TACGGCTATTCTAGCGGCTAGAATGGCATAATCCGGATGTTGTGTAGT 54852 || || || | ||| || || ||||||||||| ||||| | ||| || Sbjct 304389 AACAGCGATACGAGCAGCAAGGATGGCATAATCGGGATGCTTTGTGGT 304342 >seq49 Length=746914 Score = 237 bits (262), Expect = 2e-57 Identities = 643/972 (66%), Gaps = 14/972 (1%) Strand=Plus/Minus Query 53705 GCAATAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCA-TATTGTATTATCTC 53763 |||||| |||| ||||| || || ||||||| || | || |||| || ||||| Sbjct 373903 GCAATACTGGCCAAGTTACAGACAGCGACCTCATCAGGG-CTGCTGTATTCGATGATCTC 373845 Query 53764 AGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACA 53823 || || ||||||||||||||||| || || || || |||||||| ||| |||||| Sbjct 373844 TGTACAGAGATTACTACACTTGATAGTCCCCAAGTTCTGTTGATTCGACTTGCGGTTACA 373785 Query 53824 CGCATCCTTATAAAGAATGAATGGCGTACCAGTTTCAATCTGGGATTCTATAATCGCTTT 53883 ||||| |||||||| || | ||||| ||||| || | || | || | || || Sbjct 373784 GGCATCTTTATAAAGCATATAGGGCGTTCCAGTCTCTGTTTGAGCCTCCAGGATTGCGAA 373725 Query 53884 CCAGACGACACGAGCCTTTATTATAGATTTGTATCTCTT--TTCTCTTTCGTATAGTGTA 53941 ||| | ||||||| || | || | | | | ||| ||||| || Sbjct 373724 CCACAGCTTCTGAGCCTTGATAGTC--TTACGAGCCCGTCCTTCCAGCTCGTAGGTCATA 373667 Query 53942 TACAATCGTTCAAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACAC 54001 || | | |||||||| || ||||| |||| | | ||||| ||| | ||||| Sbjct 373666 TAGAGTTTCTCAAACTCTTCGCCCCAGACATCTTGTAGACCAGGCGCCTCAGCAGGACAA 373607 Query 54002 ATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGA 54061 | | ||| || || | | | | ||||||||| || || ||||| ||||| || Sbjct 373606 AAGAGACTCCAATCGCCATTCTGTTCAATTCGTTTCATGAACAGGTCAGGGATCCAGAGT 373547 Query 54062 GCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGG 54121 | | || | |||| | | | || || || ||||||||||| ||| || | Sbjct 373546 CCCAGGAACAAGTCTCGAGCACGAGTCTCTTCCTTGCCTGTATTCTTGCGAAGGTCCAAA 373487 Query 54122 AACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGTCATAACTCCAGGCCGTTTG 54181 || | | | || | |||||| |||||||| || |||| | |||| ||||| ||| Sbjct 373486 AAATCAAACACGTCCGCATGCCAAGGTTCCAAATACATGGCAAAGGCTCCTGGCCGCTTG 373427 Query 54182 TTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATA 54241 ||||| || ||||||| ||||| ||||| || ||| | || |||||||| || || | Sbjct 373426 TTTCCACCTTGATCTACATATCTCGCGGTATTGTTAAATACCCTCAACATAGGGATCAAT 373367 Query 54242 CCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATT 54301 || || || |||||| || || | ||||| || ||| || || ||| | Sbjct 373366 CCGTTAGAATGACCATTCGTACCAGCAATATATGAACCTGAGGCTCGGATGTTATGGACA 373307 Query 54302 GATAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAG 54361 || || ||||| || || | || ||||| | || || || | ||||| || Sbjct 373306 TTAAGGCCAATCCCACCAGCAGTCTTGGAGATCATGGCACAAGACTTGAGGGTATCGTAA 373247 Query 54362 ATGCCCTCTATACTATCATCCATCAT-GTTAAGTAGAAAACAGCTAGACATTTGGTGACG 54420 || || || || |||||| |||| || ||| || ||||| || |||||||| | | Sbjct 373246 ATTCCTTCGATCGAGTCATCCTTCATAGTCAAG-AGGAAACAACTTGACATTTGAGGCCT 373188 Query 54421 ACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGA-AAGTA 54479 || || |||||||| | | | ||||| || |||||||| |||||||||| | ||| Sbjct 373187 TGGGGTCCCAGCATTAAACAGGATCGGAGATGCATGCGTAAAATATTTTTCAGACATGTA 373128 Query 54480 GATTGTACGTCTCGATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCA 54539 | || || || || || || ||| |||||| ||| || || || || ||||||| Sbjct 373127 G-TTATAAGTTTCAATGGCCTTGTCGATATCCTCACCATGGATCCCAACAGCAACACGCA 373069 Query 54540 TTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTT 54599 | | ||| || ||||| || || || |||||| | || || || | ||| ||| || Sbjct 373068 TGAGCATTTGTTGAGGCCTCTCTACTATCTTGCCATCGATCTTGAGGAGGTATGATCGTT 373009 Query 54600 CCAAAGTTTTAAAACCAAAATAGTTGTA--TGAAAAGTCTCGTTCGTAAATAATAACTGA 54657 ||| || ||||| || || ||||| | ||||| || || ||||| | || |||| Sbjct 373008 CCAGGGTCTTAAAGCCGAAGTAGTTAAAGTTGAAA--TCGCGATCGTAGACGATGGCTGA 372951 Query 54658 GTTGAGTTTATC 54669 |||||| | ||| Sbjct 372950 GTTGAGCTGATC 372939 >seq57 Length=574579 Score = 114 bits (126), Expect = 2e-20 Identities = 217/315 (69%), Gaps = 12/315 (4%) Strand=Plus/Minus Query 23969 ATCTGCGACAAACTCCATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTTTAAC 24028 ||| || |||||||| || ||| |||||||| | |||||| || || | | || Sbjct 521244 ATCGGCCACAAACTCAATGTATTGTTTCATCAACTTGGCATTCATACCAATCAACATCAC 521185 Query 24029 TGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATAGATCT 24088 || ||||| | || | || |||||||| || || || ||||| || |||| | Sbjct 521184 AGGGAGAGCATCGGTCAAGAACTCTTGTTCGATCACAACAGCCTCTGTAATGATAGCATT 521125 Query 24089 TACT-GTTTCT--TCACTCGGTGGATA---CAATAAATGTTTAAACATCAAACATGCGAA 24142 || |||| | ||| || || | ||| || | |||| || || ||||| Sbjct 521124 GACACGTTTTTGGTCA---GGACGAGATCTCAACAA---TGAGAACAATAAGCAGGCGAA 521071 Query 24143 ATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCAT 24202 ||| ||| |||||||| || | || | ||||||||| || || || || ||||| Sbjct 521070 ATCAGTGTGGAGACCCTCATCACGCGAGATGAGTTCGTTGGAGAAGGTCAGACCAGGCAT 521011 Query 24203 TAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTC 24262 || ||||||||||| |||||||| ||||| || |||| ||||| ||||| || ||||| Sbjct 521010 GAGACCACGCTTTTTGAGCCAAAAGATGGAAGCGAATGCGCCAGAGAAGAAGATGCCTTC 520951 Query 24263 TACTGCCGCAAAGGC 24277 || || |||||||| Sbjct 520950 AACAGCAGCAAAGGC 520936 >seq1 Length=1854208 Score = 114 bits (126), Expect = 2e-20 Identities = 176/251 (70%), Gaps = 0/251 (0%) Strand=Plus/Minus Query 54314 CCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATA 54373 || ||||| ||| || || | | |||| || || || || ||||||||||| ||| Sbjct 981946 CCGCCTGCAGCTTTGGAAATCAGAGAGCATGTCTTCAAGGTGTCGTAGATGCCCTCAATA 981887 Query 54374 CTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCA 54433 ||||| || ||| | || || || ||||| ||||| || ||||| ||||| ||| Sbjct 981886 CTATCGTCTGCCATTTGAACTAAGAAGCAGCTTGACATCTGAGGACGAGGTGTTCCAGCA 981827 Query 54434 TTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCG 54493 ||||| || ||||||| || || ||||| ||||||| || | | || || ||||| Sbjct 981826 TTAAACAACGTAGGAGTCGCATGTGTAAAATATTTTTCGGACATGAAGTTATATGTCTCA 981767 Query 54494 ATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGA 54553 || || | || ||||| | ||| || || | ||| |||||||| | |||||| || Sbjct 981766 ATTGCAGCATCAATATCACGGCCATGGATACCAATTGCAACACGCATAATCATGTGTTGT 981707 Query 54554 GGTCTTTCAAC 54564 || | ||||| Sbjct 981706 GGACGCTCAAC 981696 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593720575830240