Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lobosporangium_20transversale_20[genbank_20GCA_5F002105155.1_202017- 04-20] 138 sequences; 42,768,949 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq84 134 1e-26 seq57 109 6e-19 >seq84 Length=1068272 Score = 134 bits (148), Expect = 1e-26 Identities = 161/216 (75%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || ||||| ||||| ||||||||| | || ||||| || || Sbjct 720672 ATGCAGATCTTCGTTAAGACTCTCACCGGCAAGACCATCACCCTTGAGGTCGAGTCCTCC 720731 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| ||||| | || || | ||||| ||||| || ||| | ||||| Sbjct 720732 GACACCATTGACAACG-TCAAGCAGAAGATCCAAGACAAGGAGGGTATTCCCCCAGACCA 720790 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || ||||||| || || || ||||| || || | || || ||| ||||| || Sbjct 720791 GCAGCGTCTCATCTTTGCCGGTAAGCAGCTTGAGGATGGCCGTACTCTCTCTGACTATAA 720850 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 ||||||||||||| | || || ||| | || ||||| Sbjct 720851 CATCCAGAAGGAGTCTACCCTTCATTTGGTCTTGCG 720886 Score = 127 bits (140), Expect = 2e-24 Identities = 157/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || | || ||||| ||||||||| |||| ||||| || | Sbjct 720900 ATGCAGATTTTCGTCAAGACCTTGACCGGCAAGACCATCACCCTCGAGGTCGAGTCCTCT 720959 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | | | | ||||| | || || | ||||||||||| || ||| | |||||| Sbjct 720960 GATACCATTGACAATGTCAAGCAGAAGATCCAAGACAAAGAGGGTATTCCCCCAGACCAG 721019 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || ||||||| || ||||| ||||| || || | || ||||| ||||| ||| Sbjct 721020 CAGCGTCTCATCTTTGCCGGCAAGCAGCTTGAGGATGGCCGTACCCTTTCTGACTATAAC 721079 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 |||||||||||| | || || ||| | || ||||| Sbjct 721080 ATCCAGAAGGAGTCTACTCTTCATTTGGTCTTGCG 721114 Score = 127 bits (140), Expect = 2e-24 Identities = 160/217 (74%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || | || ||||| ||||||||| | || ||||| || | Sbjct 721128 ATGCAGATTTTCGTCAAGACCTTGACCGGCAAGACCATCACCCTTGAGGTCGAGTCCTCT 721187 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | |||| ||||| | || |||| || || || ||||| || | ||||| Sbjct 721188 GACACGATCGATAACG-TCAAGCAGAAGATTCAAGATAAGGAAGGCATTCCTCCAGACCA 721246 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || ||||| | ||| ||||| ||| |||| || | || |||||| ||| ||||| Sbjct 721247 GCAGCGCCTCATTTTCGCCGGCAAGCAGTTGGAAGATGGCCGTACCCTCTCCGATTACAA 721306 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGC 40905 ||||||||||||| |||| || || | ||| ||||| Sbjct 721307 CATCCAGAAGGAGTCCACTCTCCACTTGGTGCTGCGC 721343 >seq57 Length=574579 Score = 109 bits (120), Expect = 6e-19 Identities = 119/158 (75%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 117042 TGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTT 117101 |||| ||||| || || || || ||| ||||||| || ||| ||||| |||| |||| Sbjct 520931 TGGTCGCCTTTGCTGCTGTTGAAGGCATCTTCTTCTCTGGCGCATTCGCTTCCATCTTTT 520990 Query 117102 GGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGG 117161 ||||||| || || || |||||||| || ||||| ||| |||||| |||||||| | | Sbjct 520991 GGCTCAAAAAGCGTGGTCTCATGCCTGGTCTGACCTTCTCCAACGAACTCATCTCGCGTG 521050 Query 117162 ACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTC 117199 | |||||||| || || || ||||| || ||||| Sbjct 521051 ATGAGGGTCTCCACACTGATTTCGCCTGCTTATTGTTC 521088 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515218311246880