Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lobosporangium_20transversale_20[genbank_20GCA_5F002105155.1_202017- 04-20] 138 sequences; 42,768,949 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq53 138 1e-27 seq84 134 1e-26 >seq53 Length=681236 Score = 138 bits (152), Expect = 1e-27 Identities = 156/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||||||| | || ||||| |||||||| || |||||| | || || ||| || Sbjct 253058 ACCAAGTGAAGGGTCGACTCCTTTTGAATATTATAATCGGAAAGCGTACGTCCATCTTCA 253117 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 || || |||||||| |||||||||||||||| || ||||| || || |||||||| Sbjct 253118 AGTTGCTTTCCAGCAAAGATGAGACGCTGCTGGTCTGGAGGAATACCTTCCTTGTCCTGG 253177 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 ||||| |||||||| | |||| ||||| | | ||| ||||| | || | || ||| Sbjct 253178 ATTTTCTGTTTAACATTGTCGATAGTGTCGGAGGACTCTACCTCCAAAGTAATGGTCTTG 253237 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||||| || || || |||||||||||||| Sbjct 253238 CCGGTGAGTGTCTTGACAAAAATCTGCAT 253266 Score = 120 bits (132), Expect = 3e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||||||| | |||||||| ||||| || ||||| || | ||||| |||||| Sbjct 252146 ACCAAGTGAAGGGTAGACTCCTTTTGGATATTGTAGTCAGAGAGCGTGCGACCATCCTCA 252205 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||||||||| ||| | || ||||||||||| || ||||| || || |||||||| | Sbjct 252206 AGCTGTTTTCCGGCGAAAATAAGACGCTGCTGGTCTGGAGGAATACCTTCCTTGTCCTGA 252265 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || || | |||| |||||| | ||| || || | || | || ||| Sbjct 252266 ATCTTCTGCTTGACGTTGTCGATGGTGTCGGAAGACTCAACTTCCAAAGTGATTGTCTTG 252325 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || || || || || ||||||||||| Sbjct 252326 CCAGTGAGTGTCTTGACGAAAATCTGCAT 252354 Score = 120 bits (132), Expect = 3e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||||||| | |||||||| ||||| || ||||| || | || || ||| || Sbjct 252374 ACCAAGTGAAGGGTAGACTCCTTTTGGATATTGTAGTCAGAGAGCGTACGACCATCTTCA 252433 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||||||||| ||| ||||||| |||||||| || || || || || |||||||| | Sbjct 252434 AGCTGTTTTCCGGCGAAGATGAGGCGCTGCTGGTCTGGGGGAATACCTTCCTTGTCCTGA 252493 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || || | |||| |||||| | | ||| || || | || | ||||| Sbjct 252494 ATCTTCTGCTTGACGTTATCGATGGTGTCGGAGGACTCAACTTCCAAAGTGATAGTTTTA 252553 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||||| | ||| || || ||||||||||| Sbjct 252554 CCGGTTAAAGTCTTGACGAAAATCTGCAT 252582 Score = 120 bits (132), Expect = 3e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||||||| | |||||||| ||||| || ||||| || | || || ||| || Sbjct 252830 ACCAAGTGAAGGGTAGACTCCTTTTGGATATTGTAGTCAGAGAGCGTACGACCATCTTCA 252889 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||||||||| ||| ||||||| |||||||| || || || || || |||||||| | Sbjct 252890 AGCTGTTTTCCGGCGAAGATGAGGCGCTGCTGGTCTGGGGGAATACCTTCCTTGTCCTGA 252949 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || || | |||| |||||| | | ||| || || | || | ||||| Sbjct 252950 ATCTTCTGCTTGACGTTATCGATGGTGTCGGAGGACTCAACTTCCAAAGTGATAGTTTTA 253009 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||||| | ||| || || ||||||||||| Sbjct 253010 CCGGTTAAAGTCTTGACGAAAATCTGCAT 253038 Score = 102 bits (112), Expect = 7e-17 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 118535 GTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTG 118594 ||||| || || || || ||||| || || || | ||||| |||||| ||||| Sbjct 252607 GTGGAGGGTGGATTCCTTCTGAATATTATAGTCAGAGAGCGTGCGGCCATCCTCAAGCTG 252666 Query 118595 TTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTT 118654 |||||| ||| | || ||||||||||| || ||||| || || |||||||| ||| || Sbjct 252667 TTTTCCGGCGAAAATAAGACGCTGCTGGTCTGGAGGAATACCTTCCTTGTCCTGAATCTT 252726 Query 118655 TTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGT 118714 || || || | |||| |||||| | ||| || || | || | || ||||| || Sbjct 252727 CTGCTTGACGTTGTCGATGGTGTCGGAAGACTCAACTTCCAAAGTGATTGTCTTGCCAGT 252786 Query 118715 CAGAGTTTTTACAAAAATCTGCAT 118738 || || || || ||||||||||| Sbjct 252787 GAGTGTCTTGACGAAAATCTGCAT 252810 >seq84 Length=1068272 Score = 134 bits (148), Expect = 1e-26 Identities = 172/237 (73%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 |||| || || | | ||| ||||| || | |||||||| || || ||||| || || Sbjct 720900 TACCACCACGGAGACGCAAGACCAAATGAAGGGTAGACTCCTTCTGGATGTTATAGTCAG 720841 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 | ||| || |||||| ||||| || || || |||||||||||||||| || || | Sbjct 720840 AGAGAGTACGGCCATCCTCAAGCTGCTTACCGGCAAAGATGAGACGCTGCTGGTCTGGGG 720781 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689 | || |||||||||||| || || || || || | || | |||||| | | ||||| Sbjct 720780 GAATACCCTCCTTGTCTTGGATCTTCTGCTTGACGTTGTCAATGGTGTCGGAGGACTCGA 720721 Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCTTATT 118746 |||| | ||| | || |||||||| ||||| || || || ||||||||| || ||| Sbjct 720720 CCTCAAGGGTGATGGTCTTGCCGGTGAGAGTCTTAACGAAGATCTGCATGACTAATT 720664 Score = 134 bits (148), Expect = 1e-26 Identities = 167/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 |||| || || | | || ||||||||||| || ||||| || || |||||||||||| Sbjct 721356 TACCACCACGGAGGCGCAGCACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAATCGG 721297 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 | || || ||| || | ||| || || ||| | ||||| |||||||| || |||| Sbjct 721296 AGAGGGTACGGCCATCTTCCAACTGCTTGCCGGCGAAAATGAGGCGCTGCTGGTCTGGAG 721237 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689 | ||||| ||||| ||| ||| || || || || | |||| ||||| | | ||||| Sbjct 721236 GAATGCCTTCCTTATCTTGAATCTTCTGCTTGACGTTATCGATCGTGTCAGAGGACTCGA 721177 Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||| | ||| | || |||||||||| || || || ||||||||||| Sbjct 721176 CCTCAAGGGTGATGGTCTTGCCGGTCAAGGTCTTGACGAAAATCTGCAT 721128 Score = 120 bits (132), Expect = 3e-22 Identities = 164/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 |||| || || | | ||| ||||| || | |||||||| || || ||||| || || Sbjct 721128 TACCACCACGGAGACGCAAGACCAAATGAAGAGTAGACTCCTTCTGGATGTTATAGTCAG 721069 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 | || || |||||| ||||| || || || |||||||||||||||| || || | Sbjct 721068 AAAGGGTACGGCCATCCTCAAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCTGGGG 721009 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689 | || ||||| |||||| || || || || || | || | ||| || | | ||||| Sbjct 721008 GAATACCCTCTTTGTCTTGGATCTTCTGCTTGACATTGTCAATGGTATCAGAGGACTCGA 720949 Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||||| ||| | || |||||||||| || || || ||||||||||| Sbjct 720948 CCTCGAGGGTGATGGTCTTGCCGGTCAAGGTCTTGACGAAAATCTGCAT 720900 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 || ||||| | | ||| ||||| || | || ||||| || |||||||| || || Sbjct 721582 CCACCGCGAAGGCGCAATACCAAATGAAGGGTGGACTCCTTCTGAATGTTATAGTCAGAA 721523 Query 118572 ATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGT 118631 | || || |||||| ||||| || ||||| | ||||| |||||||| || || || Sbjct 721522 AGGGTACGGCCATCCTCAAGCTGCTTGCCAGCAAAAATGAGGCGCTGCTGGTCTGGGGGA 721463 Query 118632 ATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACC 118691 || |||||||| ||| || || || || || | || | ||| || | | |||||| Sbjct 721462 ATACCCTCCTTATCTTGGATCTTCTGCTTGACATTGTCAATGGTATCAGAGGATTCGACC 721403 Query 118692 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || | ||| | || |||||||||| || || || ||||||||||| Sbjct 721402 TCAAGGGTGATGGTCTTGCCGGTCAAGGTCTTGACGAAAATCTGCAT 721356 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433829670351496