Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lobosporangium_20transversale_20[genbank_20GCA_5F002105155.1_202017- 04-20] 138 sequences; 42,768,949 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq84 118 1e-21 seq53 113 5e-20 seq99 93.3 5e-14 seq67 89.7 6e-13 seq78 86.0 7e-12 seq51 86.0 7e-12 seq48 86.0 7e-12 >seq84 Length=1068272 Score = 118 bits (130), Expect = 1e-21 Identities = 158/217 (73%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 |||||| |||||||| | || |||||| || || || || |||| ||||| || | Sbjct 720887 ACGCAAGACCAAATGAAGGGTAGACTCCTTCTGGATGTTATAGTCAGAGAGAGTACGGCC 720828 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 || || ||||||||||| || || ||||| ||||||||||| | || | | |||||| Sbjct 720827 ATCCTCAAGCTGCTTACCGGCAAAGATGAGACGCTGCTGGTCTGGGGGAATACCCTCCTT 720768 Query 43088 GTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGA 43146 ||| ||| || || |||| ||| | | | |||||| || || || || | |||| Sbjct 720767 GTCTTGGATCTTCTGCTTGA-CGTTGTCAATGGTGTCGGAGGACTCGACCTCAAGGGTGA 720709 Query 43147 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 |||| ||||| || || ||||| || ||||| ||||| Sbjct 720708 TGGTCTTGCCGGTGAGAGTCTTAACGAAGATCTGCAT 720672 Score = 100 bits (110), Expect = 3e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 42969 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 43028 ||||| |||||||| | ||| |||||| ||||| || || |||| || || || | Sbjct 721570 CGCAATACCAAATGAAGGGTGGACTCCTTCTGAATGTTATAGTCAGAAAGGGTACGGCCA 721511 Query 43029 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 43088 || || |||||||| ||||| || ||||| ||||||||||| | || | | |||||| Sbjct 721510 TCCTCAAGCTGCTTGCCAGCAAAAATGAGGCGCTGCTGGTCTGGGGGAATACCCTCCTTA 721451 Query 43089 TCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATG 43148 || ||| || || |||| | | | || || ||||| || || | |||||| Sbjct 721450 TCTTGGATCTTCTGCTTGACATTGTCAATGGTATCAGAGGATTCGACCTCAAGGGTGATG 721391 Query 43149 GTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || ||||| || | ||||| || || || ||||| Sbjct 721390 GTCTTGCCGGTCAAGGTCTTGACGAAAATCTGCAT 721356 Score = 91.5 bits (100), Expect = 2e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 42969 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 43028 |||| |||||| || | ||| |||||| || || |||||||| | || || || | Sbjct 721342 CGCAGCACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAATCGGAGAGGGTACGGCCA 721283 Query 43029 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 43088 || || | |||||| || ||||| ||||| ||||||||||| | || | || ||||| Sbjct 721282 TCTTCCAACTGCTTGCCGGCGAAAATGAGGCGCTGCTGGTCTGGAGGAATGCCTTCCTTA 721223 Query 43089 TCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATG 43148 || || || || |||| | | | |||||| || || || || | |||||| Sbjct 721222 TCTTGAATCTTCTGCTTGACGTTATCGATCGTGTCAGAGGACTCGACCTCAAGGGTGATG 721163 Query 43149 GTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || ||||| || | ||||| || || || ||||| Sbjct 721162 GTCTTGCCGGTCAAGGTCTTGACGAAAATCTGCAT 721128 Score = 87.8 bits (96), Expect = 2e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 |||||| |||||||| | || |||||| || || || || |||| || || || | Sbjct 721115 ACGCAAGACCAAATGAAGAGTAGACTCCTTCTGGATGTTATAGTCAGAAAGGGTACGGCC 721056 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 || || |||||||| || || || ||||| ||||||||||| | || | | ||| || Sbjct 721055 ATCCTCAAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCTGGGGGAATACCCTCTTT 720996 Query 43088 GTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGAT 43147 ||| ||| || || |||| | | | || || || || || |||| ||||| Sbjct 720995 GTCTTGGATCTTCTGCTTGACATTGTCAATGGTATCAGAGGACTCGACCTCGAGGGTGAT 720936 Query 43148 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 ||| ||||| || | ||||| || || || ||||| Sbjct 720935 GGTCTTGCCGGTCAAGGTCTTGACGAAAATCTGCAT 720900 >seq53 Length=681236 Score = 113 bits (124), Expect = 5e-20 Identities = 142/195 (73%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 ||||||||||||||| ||||| | || || || | || || || ||||| ||||| || Sbjct 253075 CTCCTTTTGAATATTATAATCGGAAAGCGTACGTCCATCTTCAAGTTGCTTTCCAGCAAA 253134 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 ||||| ||||||||||| | || | | ||||||||| |||||| ||||| | | Sbjct 253135 GATGAGACGCTGCTGGTCTGGAGGAATACCTTCCTTGTCCTGGATTTTCTGTTTAACATT 253194 Query 43112 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 | | |||||| || || || || | || ||||| ||||| || || ||||| || Sbjct 253195 GTCGATAGTGTCGGAGGACTCTACCTCCAAAGTAATGGTCTTGCCGGTGAGTGTCTTGAC 253254 Query 43172 AAAGATTTGCATTTT 43186 ||| || |||||||| Sbjct 253255 AAAAATCTGCATTTT 253269 Score = 95.1 bits (104), Expect = 1e-14 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 ||||||||| |||||||| |||| || || || | || || ||||| || || ||||| Sbjct 252391 CTCCTTTTGGATATTGTAGTCAGAGAGCGTACGACCATCTTCAAGCTGTTTTCCGGCGAA 252450 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 ||||| ||||||||||| | || | | ||||||||| || || || |||| | Sbjct 252451 GATGAGGCGCTGCTGGTCTGGGGGAATACCTTCCTTGTCCTGAATCTTCTGCTTGACGTT 252510 Query 43112 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 | | |||||| || || || || | ||||| ||||| || |||| ||||| || Sbjct 252511 ATCGATGGTGTCGGAGGACTCAACTTCCAAAGTGATAGTTTTACCGGTTAAAGTCTTGAC 252570 Query 43172 AAAGATTTGCAT 43183 || || ||||| Sbjct 252571 GAAAATCTGCAT 252582 Score = 95.1 bits (104), Expect = 1e-14 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 ||||||||| |||||||| |||| || || || | || || ||||| || || ||||| Sbjct 252847 CTCCTTTTGGATATTGTAGTCAGAGAGCGTACGACCATCTTCAAGCTGTTTTCCGGCGAA 252906 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 ||||| ||||||||||| | || | | ||||||||| || || || |||| | Sbjct 252907 GATGAGGCGCTGCTGGTCTGGGGGAATACCTTCCTTGTCCTGAATCTTCTGCTTGACGTT 252966 Query 43112 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 | | |||||| || || || || | ||||| ||||| || |||| ||||| || Sbjct 252967 ATCGATGGTGTCGGAGGACTCAACTTCCAAAGTGATAGTTTTACCGGTTAAAGTCTTGAC 253026 Query 43172 AAAGATTTGCAT 43183 || || ||||| Sbjct 253027 GAAAATCTGCAT 253038 Score = 93.3 bits (102), Expect = 5e-14 Identities = 138/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 ||||||||| |||||||| |||| || || || | || || ||||| || || ||||| Sbjct 252163 CTCCTTTTGGATATTGTAGTCAGAGAGCGTGCGACCATCCTCAAGCTGTTTTCCGGCGAA 252222 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 || || ||||||||||| | || | | ||||||||| || || || |||| ||| Sbjct 252223 AATAAGACGCTGCTGGTCTGGAGGAATACCTTCCTTGTCCTGAATCTTCTGCTTGA-CGT 252281 Query 43112 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170 | | | |||||| || || || || | ||||| || ||||| || || ||||| | Sbjct 252282 TGTCGATGGTGTCGGAAGACTCAACTTCCAAAGTGATTGTCTTGCCAGTGAGTGTCTTGA 252341 Query 43171 CAAAGATTTGCAT 43183 | || || ||||| Sbjct 252342 CGAAAATCTGCAT 252354 Score = 87.8 bits (96), Expect = 2e-12 Identities = 136/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052 ||||| |||||||| || |||| || || || | || || ||||| || || ||||| Sbjct 252620 TCCTTCTGAATATTATAGTCAGAGAGCGTGCGGCCATCCTCAAGCTGTTTTCCGGCGAAA 252679 Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 43112 || || ||||||||||| | || | | ||||||||| || || || |||| ||| Sbjct 252680 ATAAGACGCTGCTGGTCTGGAGGAATACCTTCCTTGTCCTGAATCTTCTGCTTGA-CGTT 252738 Query 43113 G-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 | | | |||||| || || || || | ||||| || ||||| || || ||||| || Sbjct 252739 GTCGATGGTGTCGGAAGACTCAACTTCCAAAGTGATTGTCTTGCCAGTGAGTGTCTTGAC 252798 Query 43172 AAAGATTTGCAT 43183 || || ||||| Sbjct 252799 GAAAATCTGCAT 252810 >seq99 Length=236014 Score = 93.3 bits (102), Expect = 5e-14 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 60059 AAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTC 60118 ||| |||||| | ||| |||||| |||||| ||||| |||||||||||||||| ||||| Sbjct 117415 AAAATTTCTCTTTGGCCGGGAATTGAACCCGGGTCTTCCGCGTGACAGGCGGAGATACTG 117356 Query 60119 ACCACTATACTACC 60132 |||||||||||||| Sbjct 117355 ACCACTATACTACC 117342 Score = 87.8 bits (96), Expect = 2e-12 Identities = 65/76 (86%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 |||| | |||| | ||| |||||| |||||| ||||| |||||||||||||||| |||| Sbjct 115665 AAAAGTAATCTCTTTGGCCGGGAATTGAACCCGGGTCTTCCGCGTGACAGGCGGAGATAC 115724 Query 60117 TCACCACTATACTACC 60132 | |||||||||||||| Sbjct 115725 TGACCACTATACTACC 115740 >seq67 Length=472804 Score = 89.7 bits (98), Expect = 6e-13 Identities = 67/79 (85%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 60054 ATGAAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACA 60113 || |||| || ||| | ||| |||||| |||||| ||||| |||||||||||||||| | Sbjct 314003 ATCAAAAGATTGCTCTTTGGCCGGGAATTGAACCCGGGTCTTCCGCGTGACAGGCGGAGA 313944 Query 60114 TACTCACCACTATACTACC 60132 |||| |||||||||||||| Sbjct 313943 TACTGACCACTATACTACC 313925 >seq78 Length=372185 Score = 86.0 bits (94), Expect = 7e-12 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 42975 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 43034 ||||||||||| || ||||||||| || ||||| |||| ||||| || | || || Sbjct 198855 ACCAAATGCAAGGTTGACTCCTTTTGGATGTTGTAGTCAGAAAGAGTACGACCATCCTCA 198796 Query 43035 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTC 43069 ||||||||||||||||| || | ||||||||||| Sbjct 198795 AGCTGCTTACCAGCGAAGATCAAACGCTGCTGGTC 198761 >seq51 Length=1787510 Score = 86.0 bits (94), Expect = 7e-12 Identities = 59/67 (88%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 ||| | ||| |||||| |||||| ||||| |||||||||||||||| ||||| ||||||| Sbjct 1734139 CTCTTTGGCCGGGAATTGAACCCGGGTCTTCCGCGTGACAGGCGGAGATACTGACCACTA 1734198 Query 60126 TACTACC 60132 ||||||| Sbjct 1734199 TACTACC 1734205 Score = 86.0 bits (94), Expect = 7e-12 Identities = 59/67 (88%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 ||| | ||| |||||| |||||| ||||| |||||||||||||||| ||||| ||||||| Sbjct 1744549 CTCTTTGGCCGGGAATTGAACCCGGGTCTTCCGCGTGACAGGCGGAGATACTGACCACTA 1744490 Query 60126 TACTACC 60132 ||||||| Sbjct 1744489 TACTACC 1744483 >seq48 Length=811349 Score = 86.0 bits (94), Expect = 7e-12 Identities = 59/67 (88%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 ||| | ||| |||||| |||||| ||||| |||||||||||||||| ||||| ||||||| Sbjct 65490 CTCTTTGGCCGGGAATTGAACCCGGGTCTTCCGCGTGACAGGCGGAGATACTGACCACTA 65431 Query 60126 TACTACC 60132 ||||||| Sbjct 65430 TACTACC 65424 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571816613614640