Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lobosporangium_20transversale_20[genbank_20GCA_5F002105155.1_202017- 04-20] 138 sequences; 42,768,949 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq47 237 2e-57 seq49 233 2e-56 seq57 122 1e-22 >seq47 Length=818200 Score = 237 bits (262), Expect = 2e-57 Identities = 1284/2030 (63%), Gaps = 27/2030 (1%) Strand=Plus/Minus Query 62076 GTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTC 62135 || || ||||| ||||| ||||| || | || | ||||||| ||||| ||| | Sbjct 306359 GTTCGAAGATAATACATCCCCGTCTTCAACCCCCGCTTCCATCCATAAAACGCCATCGAC 306300 Query 62136 GTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATG 62195 || | || |||| || ||| || |||||||||||||| |||||| |||||| || Sbjct 306299 GTCAACTTTCCATAATTCACATCCGCCATATGGATATTCATCGATTGAGATTGATCAATA 306240 Query 62196 AAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGCAATTTCCCAAATAGTT 62255 || || |||| ||| || ||||| | || | | |||||||| ||| ||||| | || Sbjct 306239 AATGCCCCCCGGTCCGCTGCCATATCAATTACCACCTTTTGTGAAATCTCCCACGTGGTC 306180 Query 62256 TTATAAACTCGCTTAATATCTTCTGGAAGGTTTGT-AT--TCTGAATGGATCCACCATCT 62312 || || | ||| | ||| || |||| | | || ||||||| ||||| ||| Sbjct 306179 TTGTACAGCGCCTTCAAATCATCCGGAATACTCGGGATCCTCTGAATCGATCCGTTCTCT 306120 Query 62313 ACCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGG 62372 | || |||| ||||| | | ||| ||||| | | |||| || | | | Sbjct 306119 GCAATGATCCGGTTCTTCAGTTGATCGTTCCACAGTCCCATCTCCACCAAGTCCTTCAAC 306060 Query 62373 AGATGCGGGTTAACTACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTG 62432 | ||| || || | ||||| ||||| | | |||| || ||||| |||||| | Sbjct 306059 ATCCACGGATTCACAATCTGGAACTCTCCCGCAAGCACTCGACGTGTGTAGATATTAGAG 306000 Query 62433 GTATACGGTTCCACCGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATA 62492 ||||| || || | | ||||| |||| || || | || || || || ||||| Sbjct 305999 GTATAGGGCTCGAAACATTCATTGAAACCCAGGATCTGTGAGGTCGAAGCCGTAGGCATC 305940 Query 62493 GGTGCCACCAATAAACTATTTCTAAGACCGTA-TGTTCTGATTTTATCTTTTAGATGTTC 62551 ||||||||||| | || | | || | || | |||| | | || || Sbjct 305939 GGTGCCACCAAGAGTGAGTTGCGCACTCCATGCTGCT-TGATACTGGCCCGGAGCGTATC 305881 Query 62552 CCAATTCCAAAGATCCGACGGTACAACANNNNNNNNNNNATATTGTAGAATACCGTTACT 62611 ||| | ||| ||||| || || || ||| | || || || Sbjct 305880 CCAGTCCCAGAGATCGGAGGGCGTTACCCCCCACATGTCCGGTTGCAAGATTCCCTTCGA 305821 Query 62612 GGCGTACGATCCTACATATGTATCATATGGTCCTTCCTTCTCAGCTAGTTTACAACTCGC 62671 || || || |||| || ||||| | || |||| || ||| | | ||| | Sbjct 305820 AACGGGTGAGCCCTCATAGGTCTCATAAGTACCCTCCTCCTGAGCCATCTCACAGGATGA 305761 Query 62672 CTCTAATGCACCGTAATAAATGGTTTCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGG 62731 || || || | | ||| ||||| || || |||| ||| || | | |||| || || Sbjct 305760 TTCCAAAGCCGCATGATAGATGGTCTCGAAAATCTGCTTGTTCAACTGACGTGCCTCGGG 305701 Query 62732 GCTATCAAATGG-ATA---ATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAA 62787 ||||| || || || | |||| || ||||||| || || ||||| | Sbjct 305700 TGAGTCAAAGGGCATGCGCATCTTGATGAAT----GCATCCGCTAGACCCTGGACACCCA 305645 Query 62788 TACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAA 62847 ||| | ||| | ||| | ||| || || || || ||||||| |||||| || || Sbjct 305644 CACCCACAGGACGATGACGCTTGTTGGACCGCTCTGCCTCTGGAACAGGATAGTAGTTCT 305585 Query 62848 TATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAA 62907 ||| ||||| || || | || | | | || ||| || | | || | | Sbjct 305584 GATCAATAATCTTGTTCAAGTTGCGGGTCACGACCTTGGTGACCTGGTGAAGCATCTTGA 305525 Query 62908 AATCAAATCGCCCATCTATT-ACAAACATGTTCAATGCAACAGATGCCAGATTACACACG 62966 | ||| | | || |||| | ||| | || |||| | |||| ||||| || Sbjct 305524 AGTCATACGTCTGAT-TATTGATAAAAGTCGGCAGCGCAATACTGGCCAAGTTACAGACC 305466 Query 62967 GCTACCTCATTAGCATCCGCA-TATTGTATTATCTCAGTGCAAAGATTACTACACTTGAT 63025 ||||| || | | | | || |||| | ||||| || || | |||||| |||||||| Sbjct 305465 GCTACTTCGTCTGGA-CTGCTGTATTCAACAATCTCTGTACACAAATTACTGCACTTGAT 305407 Query 63026 AGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGG 63085 ||||| | || |||||||| || ||| || |||||||| ||||| ||| | || Sbjct 305406 CGTTCCAAGGTTCTGTTGATTCGATTTACGGTTGCAAGCATCCTTGTAAAGCATGTAAGG 305347 Query 63086 AGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTC-GAGCCTTTATTA 63144 ||||| || || |||| | || | ||| || | ||||| | || | ||||| || Sbjct 305346 CGTACCGGTCTCGGTCTGGGCCTCCAGAATAGCATACCAGA-GTTTCTGGGCCTTGATGG 305288 Query 63145 TAGATTTGTATCTCCTTTCTCTTTCGTATAGAGTATACAATCGTTCGAACTCGTCTCCCC 63204 | | | | || | || ||| || ||| | | ||||| || || |||| Sbjct 305287 TCTTGCGGGCACGACCCTCACGCTCATATCGATGATAGAGTTCCTCGAATTCTTCGCCCC 305228 Query 63205 AAACATTGTCCAATCTAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCT 63264 | |||| | | || ||| || | ||||| | || ||| || ||| |||| Sbjct 305227 ACACATCTTGAAGTCCAGGTGCCTCCGCAGGACAGAACAGACTCCAGTCAGCGTTTTCCT 305168 Query 63265 TCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTTGTTCTA 63323 | ||| |||| || |||||||| ||||| ||||| ||| || | ||| | | | Sbjct 305167 CGATACGTCTCATGAACAGATCAGGGATCCAGAGAGC-ATAGAACAAATCACGAGCACGG 305109 Query 63324 TGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCAC 63383 ||||| ||||| || ||||| |||||| ||||| | | | ||| | |||||| Sbjct 305108 GTCTCCTCCTTTCCAGTGTTCTTGCGAAGATCCAGGAATTCAAAGACATCGGCATGCCAG 305049 Query 63384 GGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTA 63443 ||||| | || ||||| | | ||||| || ||||| || |||||||| | || | | Sbjct 305048 GGTTCGAGATACATGGCAAAGGCACCAGGACGCTTGTTGCCGCCCTGATCAACATAACGA 304989 Query 63444 GCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGATATA-CCATTGGTACC 63502 || || || || || || | | ||| ||||| | || || || ||| || || || || Sbjct 304988 GCCGTATTGTTGTAGACACGAAGCATAGGAATCAACCCATTGGA-ATATCCGTTCGTTCC 304930 Query 63503 GGAGATATAGCCTCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCAT 63562 | || || || |||||||| || ||| ||||| || || || || | Sbjct 304929 AGCAATGTATGAACCCGACGCACGAATGTTGTGAATATTAAGACCAATGCCTCCAGCGGT 304870 Query 63563 TTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATGCCTTCTATGCTATCATCGAT 63622 ||| ||||| | || || || | || |||||||| || || || |||||| | Sbjct 304869 TTTCGAGATCATGGCACAGGTCTTGAGGGTATCATAGATACCCTCGATCGAATCATCCTT 304810 Query 63623 CAT-GTTAAGTAGAAAACAGCTAGACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGG 63681 ||| || || ||||| || | ||||| || | |||| ||||| ||||| || | | Sbjct 304809 CATCGTCAACAAGAAACAAGAT-GACATCTGAGGGCGAGGTGTTCCAGCATTGAAGAGCG 304751 Query 63682 TAGGAGAAGCGTGCGTAAACCATTTTTCAGAAA-GTAGATTGTACGTCTCAATAGCTGAG 63740 | || ||||| || || || |||||||||| | ||| |||||| ||||||||||| | Sbjct 304750 TGGGCGAAGCATGGGTGAAGTATTTTTCAGACATGTA-ATTGTAGGTCTCAATAGCCTTG 304692 Query 63741 TCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCA 63800 || | || | ||| || || || | ||||||||| ||||| ||||||||||| || Sbjct 304691 TCCACATTATCTCCATGGATCCCGACCGAGACACGCATCAACATATGCTGAGGTCTCTCC 304632 Query 63801 ACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAG 63860 ||| ||| || || | | ||| || || | ||||| || ||||| || Sbjct 304631 GCAACCTTGCCATTGATCCGGAGAAGGTAAGAGCGCTCAAGGGTTTTGAATCCAAAGTAA 304572 Query 63861 TTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAATTGAGCTTATCCTTATATTTGTTA 63920 ||||| ||||| || ||||| || || |||| ||||| || || || || Sbjct 304571 TTGTAATTGAAGTCACGATCGTAGATGATTGCCGAGTTGAGGCGTTCTGCATTCTTCATA 304512 Query 63921 ACTATATCCATGGTAATACTTGAAATAATCGGAGAATGTTTCCCATTTTTAGGATTAACA 63980 || | | ||| | || || || | | || || ||| | || || |||| | Sbjct 304511 ACATTGTTATAGGTTGTCTCGGAGATCATGGAGGCATTCTTGCCAGTCTTGGGGTTAATA 304452 Query 63981 TAGTTGAATAAATCCTCCATCACTTCACTAAATAGtttttttGTTTCCTTGTGTAGATTT 64040 || ||| | | ||| || | ||| | | || | || || || || || || ||||| Sbjct 304451 TACTTGTAGAGATCTTCGACCACCTGAGAGAAAACCTTCTTGGTCTCTTTATGAAGATTG 304392 Query 64041 GATATGGCTATTCTGGCGGCTAGAATGGCATAATCCGGATGTTGTGTAGT 64090 || | || || | || || || ||||||||||| ||||| | ||| || Sbjct 304391 GAAACAGCGATACGAGCAGCAAGGATGGCATAATCGGGATGCTTTGTGGT 304342 >seq49 Length=746914 Score = 233 bits (258), Expect = 2e-56 Identities = 639/964 (66%), Gaps = 16/964 (2%) Strand=Plus/Minus Query 62952 GCCAGATTACACACGGCTACCTCATTAGCATCCGCA-TATTGTATTATCTCAGTGCAAAG 63010 |||| ||||| || || ||||||| || | || |||| || ||||| || || || Sbjct 373894 GCCAAGTTACAGACAGCGACCTCATCAGGG-CTGCTGTATTCGATGATCTCTGTACAGAG 373836 Query 63011 ATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTT 63070 |||||||||||||||||| || || || |||||||| ||| |||||| ||||| || Sbjct 373835 ATTACTACACTTGATAGTCCCCAAGTTCTGTTGATTCGACTTGCGGTTACAGGCATCTTT 373776 Query 63071 ATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGAC 63130 |||||| || | || || ||||| || | |||| || | || || ||| | | Sbjct 373775 ATAAAGCATATAGGGCGTTCCAGTCTCTGTTTGAGCCTCCAGGATTGCGAACCACA-GCT 373717 Query 63131 TC-GAGCCTTTATTATAGATTTGTATCTCCT--TTCTCTTTCGTATAGAGTATACAATCG 63187 || ||||||| || | || | | | | ||| ||||| |||| | | Sbjct 373716 TCTGAGCCTTGATAGTC--TTACGAGCCCGTCCTTCCAGCTCGTAGGTCATATAGAGTTT 373659 Query 63188 TTCGAACTCGTCTCCCCAAACATTGTCCAATCTAGGACATTCATCCGGACACATCAACGA 63247 || ||||| || ||||| |||| | | | ||| ||| | ||||| | | Sbjct 373658 CTCAAACTCTTCGCCCCAGACATCTTGTAGACCAGGCGCCTCAGCAGGACAAAAGAGACT 373599 Query 63248 CCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAA 63307 ||| || || | | | | ||||||||| || || ||||| ||||| || | | || Sbjct 373598 CCAATCGCCATTCTGTTCAATTCGTTTCATGAACAGGTCAGGGATCCAGAGTCCCAGGAA 373539 Query 63308 TAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCAT 63367 | |||| | | | || || || ||||||||||| ||| || | || | | Sbjct 373538 CAAGTCTCGAGCACGAGTCTCTTCCTTGCCTGTATTCTTGCGAAGGTCCAAAAAATCAAA 373479 Query 63368 AATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCC 63427 | || | |||||| |||||||| || ||||| | |||| ||||| |||||||| || Sbjct 373478 CACGTCCGCATGCCAAGGTTCCAAATACATGGCAAAGGCTCCTGGCCGCTTGTTTCCACC 373419 Query 63428 CTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGA 63487 ||||||| ||||| ||||| || ||| | || |||||||| || || | ||||| || Sbjct 373418 TTGATCTACATATCTCGCGGTATTGTTAAATACCCTCAACATAGGGATCAATCCGTTAGA 373359 Query 63488 TATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATATTACTAATTGATAGACC 63547 |||||| ||||| | ||||| || ||| || || ||| | || || Sbjct 373358 ATGACCATTCGTACCAGCAATATATGAACCTGAGGCTCGGATGTTATGGACATTAAGGCC 373299 Query 63548 TATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATGCCTTC 63607 || || || || | || ||||| | || || || | || || || || ||||| Sbjct 373298 AATCCCACCAGCAGTCTTGGAGATCATGGCACAAGACTTGAGGGTATCGTAAATTCCTTC 373239 Query 63608 TATGCTATCATCGATCAT-GTTAAGTAGAAAACAGCTAGACATTTGGTGACGAGTAGTTC 63666 || ||||| |||| || ||| || ||||| || |||||||| | | | || | Sbjct 373238 GATCGAGTCATCCTTCATAGTCAAG-AGGAAACAACTTGACATTTGAGGCCTTGGGGTCC 373180 Query 63667 CCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGA-AAGTAGATTGTAC 63725 | |||||||| | | | ||||| || |||||||| |||||||||| | |||| || || Sbjct 373179 CAGCATTAAACAGGATCGGAGATGCATGCGTAAAATATTTTTCAGACATGTAG-TTATAA 373121 Query 63726 GTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATG 63785 || ||||| || ||| |||||| ||| || || || || |||||||| | ||| Sbjct 373120 GTTTCAATGGCCTTGTCGATATCCTCACCATGGATCCCAACAGCAACACGCATGAGCATT 373061 Query 63786 TGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTT 63845 || ||||| || || || || ||| | || || | | ||| ||| ||||| || Sbjct 373060 TGTTGAGGCCTCTCTACTATCTTGCCATCGATCTTGAGGAGGTATGATCGTTCCAGGGTC 373001 Query 63846 TTAAAACCAAAATAGTTGTA--TGAAAAGTCTCGTTCGTAAATAATAACCGAATTGAGCT 63903 ||||| || || ||||| | ||||| || || ||||| | || | || ||||||| Sbjct 373000 TTAAAGCCGAAGTAGTTAAAGTTGAAA--TCGCGATCGTAGACGATGGCTGAGTTGAGCT 372943 Query 63904 TATC 63907 ||| Sbjct 372942 GATC 372939 >seq57 Length=574579 Score = 122 bits (134), Expect = 1e-22 Identities = 118/152 (78%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 33573 AACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAA 33632 |||| || || |||||||| ||| |||||||| || | || | |||||| || Sbjct 521087 AACAATAAGCAGGCGAAATCAGTGTGGAGACCCTCATCACGCGAGATGAGTTCGTTGGAG 521028 Query 33633 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCG 33692 || || || || ||||| || ||||||||||| |||||||| ||||||||||||| || Sbjct 521027 AAGGTCAGACCAGGCATGAGACCACGCTTTTTGAGCCAAAAGATGGAAGCGAATGCGCCA 520968 Query 33693 GAAAAGAAGATTCCTTCTACTGCAGCAAAGGC 33724 || |||||||| ||||| || ||||||||||| Sbjct 520967 GAGAAGAAGATGCCTTCAACAGCAGCAAAGGC 520936 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629816513564640