Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lobosporangium_20transversale_20[genbank_20GCA_5F002105155.1_202017- 04-20] 138 sequences; 42,768,949 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq49 174 1e-38 seq57 104 2e-17 >seq49 Length=746914 Score = 174 bits (192), Expect = 1e-38 Identities = 560/860 (65%), Gaps = 18/860 (2%) Strand=Plus/Minus Query 37708 TTACATACAGCAACTTCATCTTCGTTACTAAATTGTATAATCTCTGTACAGAGATTACTC 37767 ||||| ||||| || ||||| | | || ||| || |||||||||||||||||||| Sbjct 373888 TTACAGACAGCGACCTCATCAGGGCTGCTGTATTCGATGATCTCTGTACAGAGATTACTA 373829 Query 37768 GATCTAATTGTTCCCAAATTGCTTTGATTGGATTTTTTATTACAAGAATCTTTATATAGT 37827 | | || || ||||| || |||||| || || ||||| | ||||||||| || Sbjct 373828 CACTTGATAGTCCCCAAGTTCTGTTGATTCGACTTGCGGTTACAGGCATCTTTATAAAGC 373769 Query 37828 ATATACGGCGTTCCTTGTTCTATTTGAGCCTCGATAATAGATTTCCATAAACTTCTT-GC 37886 ||||| |||||||| ||| |||||||||| | || | ||| | ||||| || Sbjct 373768 ATATAGGGCGTTCCAGTCTCTGTTTGAGCCTCCAGGATTGCGAACCACAG-CTTCTGAGC 373710 Query 37887 TTTAACGATCGCTTTA--AtttttttCTTTGTT-TCGTATTCTATATATAATTTGTTAAA 37943 || ||| | ||| | | ||| ||||| ||||| | ||| | ||| Sbjct 373709 CTT---GATAGTCTTACGAGCCCGTCCTTCCAGCTCGTAGGTCATATAGAGTTTCTCAAA 373653 Query 37944 ATCATTCCCCCATACATCGCATAATCCTGGACATTC-GCATGGACACATTAGAGACCATT 38002 || | ||||| ||||| || || || || ||| ||||| | ||| ||| | Sbjct 373652 CTCTTCGCCCCAGACATCTTGTAGACCAGGCGCCTCAGCA-GGACAAAAGAGACTCCAAT 373594 Query 38003 CTTCATCTTTTTCTACGCGTTCCATAAATAAATCAGGTACCCATAATGCAGTAAATAAAT 38062 | ||| | ||| | |||| ||| || | ||||| | ||| | | | || || | Sbjct 373593 CGCCATTCTGTTCAATTCGTTTCATGAACAGGTCAGGGATCCAGAGTCCCAGGAACAAGT 373534 Query 38063 CTTTGGTTCTATATTCTTCGTTCCCTACATTCTTTCTTAAGCTTAGAAAATCGAATATAT 38122 || | | | ||||| || ||| |||||| | | | | |||||| || | | Sbjct 373533 CTCGAGCACGAGTCTCTTCCTTGCCTGTATTCTTGCGAAGGTCCAAAAAATCAAACACGT 373474 Query 38123 CAGCGTGCCATGGTTCTATATAAATCGACATTGCTCCTGGTCTTTTATCACCTCCCTGAT 38182 | || ||||| ||||| | ||| || | | |||||||| | || | || || |||| Sbjct 373473 CCGCATGCCAAGGTTCCAAATACATGGCAAAGGCTCCTGGCCGCTTGTTTCCACCTTGAT 373414 Query 38183 TAATATATCTAACTGTGTTATTATATATTCTTAACATAGGTACTATACCATTAGATTTGC 38242 | |||||| | || || ||| ||| || |||||||| | | || ||||| | | Sbjct 373413 CTACATATCTCGCGGTATTGTTAAATACCCTCAACATAGGGATCAATCCGTTAGAATGAC 373354 Query 38243 CGTTTATACCGGATATATAAGTACCCTTAGCTCGTATATTACTTATCGACAAT----CCT 38298 | || |||| | ||||| | ||| ||||| || ||| | |||| | || Sbjct 373353 CATTCGTACCAGCAATATATGAACCTGAGGCTCGGATGTTA----TGGACATTAAGGCCA 373298 Query 38299 ATTCCACCTGCATGTTTTGATATTAAAGCGCATTGTTTTAACGTATCAAATATACCTTCT 38358 || ||||| ||| || || || | || || || | ||||| | || ||||| Sbjct 373297 ATCCCACCAGCAGTCTTGGAGATCATGGCACAAGACTTGAGGGTATCGTAAATTCCTTCG 373238 Query 38359 ATACTGTCATCCTTTATTGGTAGTATAAAACAACTAGACATTTGAGGCAATGGAGTTCCG 38418 || ||||||||| || | | | |||||||| |||||||||||| ||| || || Sbjct 373237 ATCGAGTCATCCTTCATAGTCAAGAGGAAACAACTTGACATTTGAGGCCTTGGGGTCCCA 373178 Query 38419 GCGTTAAATAATGTAGGAGATGCATGTATGAACCATTTTTCCGACAAATAATTATATGTT 38478 || ||||| | | ||||||||||| | || ||||||| |||| || ||||| ||| Sbjct 373177 GCATTAAACAGGATCGGAGATGCATGCGTAAAATATTTTTCAGACATGTAGTTATAAGTT 373118 Query 38479 TCTATTACATCATCTATATCACCGCCGTGAATACCTAGAGATACCCTCATTAGCATATGT 38538 || || | | || ||||| | || || || || | || || | ||| ||||| ||| Sbjct 373117 TCAATGGCCTTGTCGATATCCTCACCATGGATCCCAACAGCAACACGCATGAGCATTTGT 373058 Query 38539 TGTGGTCTTTCTATTATTTT 38558 || || || |||| ||| || Sbjct 373057 TGAGGCCTCTCTACTATCTT 373038 >seq57 Length=574579 Score = 104 bits (114), Expect = 2e-17 Identities = 199/293 (68%), Gaps = 3/293 (1%) Strand=Plus/Minus Query 11921 TACATTTCTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTCT 11980 ||||| |||||||||| ||| || || ||||| || ||||| || |||| ||| || Sbjct 520445 TACATCTCTGAATGAACATTCTCAATCATGATTTGGAAGCCATAAAAGCATCTTGCTTCA 520386 Query 11981 GAACACTGTACATCCACATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCACTA 12040 | ||| || || | || | |||| | |||||||| ||||||||||| ||| Sbjct 520385 GGGATCTGGACCTCATTCGAGAAACGTTCCAAGAGGTTCTCATTCACAATACCATCGCTA 520326 Query 12041 GATGCAAAAAATGCTAGTATATGTTTTATAAAGTATTTTTCGTCTTTAGTTAA---TTTA 12097 | ||||| || || || || ||| | ||| || ||| |||| || || || Sbjct 520325 GCAGCAAAGAAGGCCAGGATGTGTGAAACGAAGAATCGTTCATCTTCTGTCAAACGGTTT 520266 Query 12098 TCCCAATCATCTAAATCTTTTGATAAATCTACTTCTTCAACGGTCCAAAAACTTGCCACT 12157 ||||| |||| | || || || | ||||||||| ||| | ||||| || ||| | Sbjct 520265 TCCCAGTCATGCATGTCCTTGGAAAGATCTACTTCCTCAGCAGTCCAGAAGGATGCTTCA 520206 Query 12158 GATTGTTTATACATTTTCCAGATATCATGATACTTAATAGGGAAAATAACGAA 12210 | | || ||||| | ||||| ||||| |||| || ||||| | |||||| Sbjct 520205 GCCTTCTTGTACATCTGCCAGACCTCATGGAACTTGATGGGGAAGAGAACGAA 520153 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468523991794720