Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lobosporangium_20transversale_20[genbank_20GCA_5F002105155.1_202017- 04-20] 138 sequences; 42,768,949 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq47 269 3e-67 seq49 224 1e-53 seq1 123 3e-23 seq57 113 6e-20 >seq47 Length=818200 Score = 269 bits (298), Expect = 3e-67 Identities = 1288/2029 (63%), Gaps = 25/2029 (1%) Strand=Plus/Minus Query 64869 GTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTC 64928 || || ||||| ||||| ||||| || | || | ||||||| ||||| ||| | Sbjct 306359 GTTCGAAGATAATACATCCCCGTCTTCAACCCCCGCTTCCATCCATAAAACGCCATCGAC 306300 Query 64929 GTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATG 64988 || | || |||| || ||| || |||||||||||||| |||||| |||||| || Sbjct 306299 GTCAACTTTCCATAATTCACATCCGCCATATGGATATTCATCGATTGAGATTGATCAATA 306240 Query 64989 AAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTT 65048 || || |||| ||| || ||||| | || | | |||||||| ||| ||||| | || Sbjct 306239 AATGCCCCCCGGTCCGCTGCCATATCAATTACCACCTTTTGTGAAATCTCCCACGTGGTC 306180 Query 65049 TTATAAACTCGCTTAATATCTTCTGGAAGGTTTGT-AT--TCTGAATGGATCCACCATCT 65105 || || | ||| | ||| || |||| | | || ||||||| ||||| ||| Sbjct 306179 TTGTACAGCGCCTTCAAATCATCCGGAATACTCGGGATCCTCTGAATCGATCCGTTCTCT 306120 Query 65106 GCCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGG 65165 || || |||| ||||| | | ||| ||||| | | |||| || | | | Sbjct 306119 GCAATGATCCGGTTCTTCAGTTGATCGTTCCACAGTCCCATCTCCACCAAGTCCTTCAAC 306060 Query 65166 AGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTG 65225 | |||||| || | || || ||||| | | |||| || ||||| |||||| | Sbjct 306059 ATCCACGGATTCACAATCTGGAACTCTCCCGCAAGCACTCGACGTGTGTAGATATTAGAG 306000 Query 65226 GTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATA 65285 ||||| || || | | | ||||| |||| || || | || || || || ||||| Sbjct 305999 GTATAGGGCTCGAAACATTCATTGAAACCCAGGATCTGTGAGGTCGAAGCCGTAGGCATC 305940 Query 65286 GGTGCCACCAATAAACTATTTCTAAGACCGTA-TGTTCTGATTTTATCTTTTAGAGGTTC 65344 ||||||||||| | || | | || | || | |||| | | || | || Sbjct 305939 GGTGCCACCAAGAGTGAGTTGCGCACTCCATGCTGCT-TGATACTGGCCCGGAGCGTATC 305881 Query 65345 CCAATTCCAAAGATCCGACGGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACT 65404 ||| | ||| ||||| || || || ||| | || || || Sbjct 305880 CCAGTCCCAGAGATCGGAGGGCGTTACCCCCCACATGTCCGGTTGCAAGATTCCCTTCGA 305821 Query 65405 GGCGTACGATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGC 65464 || || || |||| || || || | || |||| || ||| | ||||| | Sbjct 305820 AACGGGTGAGCCCTCATAGGTCTCATAAGTACCCTCCTCCTGAGCCATCTCACAGGATGA 305761 Query 65465 CTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAG 65524 || || || | | ||| ||||| ||||| |||| ||| || | | |||| || | Sbjct 305760 TTCCAAAGCCGCATGATAGATGGTCTCGAAAATCTGCTTGTTCAACTGACGTGCCTCGGG 305701 Query 65525 GCTATCAAATGG-ATA---ATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAA 65580 ||||| || || || | |||| || || |||| || || ||||| | Sbjct 305700 TGAGTCAAAGGGCATGCGCATCTTGATGAAT----GCATCCGCTAGACCCTGGACACCCA 305645 Query 65581 TACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAA 65640 ||| | ||| | ||| | ||| || || || || ||||||| |||||| || || Sbjct 305644 CACCCACAGGACGATGACGCTTGTTGGACCGCTCTGCCTCTGGAACAGGATAGTAGTTCT 305585 Query 65641 TATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAA 65700 ||| ||||| || || | || | | | || ||| || | | || | | Sbjct 305584 GATCAATAATCTTGTTCAAGTTGCGGGTCACGACCTTGGTGACCTGGTGAAGCATCTTGA 305525 Query 65701 AATCAAATCGCTCATCTATT-ACAAACATGTTCAATGCAACAGATGCCAGATTACAAACG 65759 | ||| | || || |||| | ||| | || |||| | |||| ||||| || Sbjct 305524 AGTCATACGTCTGAT-TATTGATAAAAGTCGGCAGCGCAATACTGGCCAAGTTACAGACC 305466 Query 65760 GCTACCTCATTAGCATCCGCA-TATTGTATTATCTCAGTGCAAAGATTACTACACTTGAT 65818 ||||| || | | | | || |||| | ||||| || || | |||||| |||||||| Sbjct 305465 GCTACTTCGTCTGGA-CTGCTGTATTCAACAATCTCTGTACACAAATTACTGCACTTGAT 305407 Query 65819 GGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGG 65878 ||||| | || |||||||| || ||| || |||||||| ||||| ||| | || Sbjct 305406 CGTTCCAAGGTTCTGTTGATTCGATTTACGGTTGCAAGCATCCTTGTAAAGCATGTAAGG 305347 Query 65879 AGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTC-GAGCCTTTATTA 65937 ||||| || || |||| | || | ||| || | ||||| | || | ||||| || Sbjct 305346 CGTACCGGTCTCGGTCTGGGCCTCCAGAATAGCATACCAGA-GTTTCTGGGCCTTGATGG 305288 Query 65938 TAGATTTGTATCTCTTTTCTCTTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCC 65997 | | | || | || ||| | ||| | | ||||| || || |||| Sbjct 305287 TCTTGCGGGCACGACCCTCACGCTCATATCGATGATAGAGTTCCTCGAATTCTTCGCCCC 305228 Query 65998 AAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCT 66057 | |||| | | |||||| || | ||||| | || ||| || ||| |||| Sbjct 305227 ACACATCTTGAAGTCCAGGTGCCTCCGCAGGACAGAACAGACTCCAGTCAGCGTTTTCCT 305168 Query 66058 TCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAAATCTCTGGTTCTA 66116 | ||| |||| || |||||||| ||||| ||||| ||| || ||||| | | | Sbjct 305167 CGATACGTCTCATGAACAGATCAGGGATCCAGAGAGC-ATAGAACAAATCACGAGCACGG 305109 Query 66117 TGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCAC 66176 ||||| ||||| || ||||| |||||| ||||| | | | ||| |||||| Sbjct 305108 GTCTCCTCCTTTCCAGTGTTCTTGCGAAGATCCAGGAATTCAAAGACATCGGCATGCCAG 305049 Query 66177 GGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTA 66236 ||||| | || ||||| | | ||||| || ||||| || |||||||| | || | | Sbjct 305048 GGTTCGAGATACATGGCAAAGGCACCAGGACGCTTGTTGCCGCCCTGATCAACATAACGA 304989 Query 66237 GCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCG 66296 || || || || || || | | ||| ||||| | |||||||| || || || || Sbjct 304988 GCCGTATTGTTGTAGACACGAAGCATAGGAATCAACCCATTGGAATATCCGTTCGTTCCA 304929 Query 66297 GAGATATAGCTTCCACTTGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATT 66356 | || || || |||||||| || ||| ||||| || || || || || Sbjct 304928 GCAATGTATGAACCCGACGCACGAATGTTGTGAATATTAAGACCAATGCCTCCAGCGGTT 304869 Query 66357 TTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATC 66416 || ||||| | || || || | ||||||||||| ||||| || ||||||| || Sbjct 304868 TTCGAGATCATGGCACAGGTCTTGAGGGTATCATAGATACCCTCGATCGAATCATCCTTC 304809 Query 66417 AT-GTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGT 66475 || || || ||||| || | ||||| || | ||| ||||| ||||| || | || Sbjct 304808 ATCGTCAACAAGAAACAAGAT-GACATCTGAGGGCGAGGTGTTCCAGCATTGAAGAGCGT 304750 Query 66476 AGGAGAAGCGTGCGTAAACCATTTTTCAGAAA-GTAGATTGTACGTCTCAATAGCTGAGT 66534 || ||||| || || || |||||||||| | ||| |||||| ||||||||||| || Sbjct 304749 GGGCGAAGCATGGGTGAAGTATTTTTCAGACATGTA-ATTGTAGGTCTCAATAGCCTTGT 304691 Query 66535 CTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAA 66594 | | || | ||| || || || | ||||||||| ||||| ||||||||||| || Sbjct 304690 CCACATTATCTCCATGGATCCCGACCGAGACACGCATCAACATATGCTGAGGTCTCTCCG 304631 Query 66595 CGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGT 66654 | | |||| || || | | ||| || || | ||||| || ||||| || | Sbjct 304630 CAACCTTGCCATTGATCCGGAGAAGGTAAGAGCGCTCAAGGGTTTTGAATCCAAAGTAAT 304571 Query 66655 TGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTTATATTTGTTAA 66714 |||| ||||| || ||||| || || |||||||||| || || || ||| Sbjct 304570 TGTAATTGAAGTCACGATCGTAGATGATTGCCGAGTTGAGGCGTTCTGCATTCTTCATAA 304511 Query 66715 CTACATCCATGGTAATACTTGAAATAATCGGAGAATGTTTCCCATTTTTAGGATTGACAT 66774 | | ||| | || || || | | || || ||| | || || || | || Sbjct 304510 CATTGTTATAGGTTGTCTCGGAGATCATGGAGGCATTCTTGCCAGTCTTGGGGTTAATAT 304451 Query 66775 AGTTGAATAAATCCTCCATCACTTCACTAAATAGtttttttGTTTCTTTGTGTAGATTTG 66834 | ||| | | ||| || | ||| | | || | || || || ||||| || ||||| | Sbjct 304450 ACTTGTAGAGATCTTCGACCACCTGAGAGAAAACCTTCTTGGTCTCTTTATGAAGATTGG 304391 Query 66835 ATACGGCTATTCTAGCGGCTATAATGGCATAATCCGGATGTTGTGTAGT 66883 | || || || | ||| || | ||||||||||| ||||| | ||| || Sbjct 304390 AAACAGCGATACGAGCAGCAAGGATGGCATAATCGGGATGCTTTGTGGT 304342 >seq49 Length=746914 Score = 224 bits (248), Expect = 1e-53 Identities = 637/964 (66%), Gaps = 16/964 (2%) Strand=Plus/Minus Query 65745 GCCAGATTACAAACGGCTACCTCATTAGCATCCGCA-TATTGTATTATCTCAGTGCAAAG 65803 |||| ||||| || || ||||||| || | || |||| || ||||| || || || Sbjct 373894 GCCAAGTTACAGACAGCGACCTCATCAGGG-CTGCTGTATTCGATGATCTCTGTACAGAG 373836 Query 65804 ATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTT 65863 ||||||||||||||| || || || || |||||||| ||| |||||| ||||| || Sbjct 373835 ATTACTACACTTGATAGTCCCCAAGTTCTGTTGATTCGACTTGCGGTTACAGGCATCTTT 373776 Query 65864 ATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGAC 65923 |||||| || | || || ||||| || | |||| || | || || ||| | | Sbjct 373775 ATAAAGCATATAGGGCGTTCCAGTCTCTGTTTGAGCCTCCAGGATTGCGAACCACA-GCT 373717 Query 65924 TC-GAGCCTTTATTATAGATTTGTATCTCTT--TTCTCTTTCGTATAGTGTATACAATCG 65980 || ||||||| || | || | | | | ||| ||||| |||| | | Sbjct 373716 TCTGAGCCTTGATAGTC--TTACGAGCCCGTCCTTCCAGCTCGTAGGTCATATAGAGTTT 373659 Query 65981 TTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGA 66040 || ||||| || ||||| |||| | | ||||| ||| | ||||| | | Sbjct 373658 CTCAAACTCTTCGCCCCAGACATCTTGTAGACCAGGCGCCTCAGCAGGACAAAAGAGACT 373599 Query 66041 CCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAA 66100 ||| || || | | | | ||||||||| || || ||||| ||||| || | | || Sbjct 373598 CCAATCGCCATTCTGTTCAATTCGTTTCATGAACAGGTCAGGGATCCAGAGTCCCAGGAA 373539 Query 66101 TAAATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCAT 66160 || |||| | | | || || || ||||||||||| ||| || | || | | Sbjct 373538 CAAGTCTCGAGCACGAGTCTCTTCCTTGCCTGTATTCTTGCGAAGGTCCAAAAAATCAAA 373479 Query 66161 AATATCATAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCC 66220 | || |||||| |||||||| || ||||| | |||| ||||| |||||||| || Sbjct 373478 CACGTCCGCATGCCAAGGTTCCAAATACATGGCAAAGGCTCCTGGCCGCTTGTTTCCACC 373419 Query 66221 CTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGA 66280 ||||||| ||||| ||||| || ||| | || |||||||| || || | || || || Sbjct 373418 TTGATCTACATATCTCGCGGTATTGTTAAATACCCTCAACATAGGGATCAATCCGTTAGA 373359 Query 66281 TGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCACGAATATTACTAATTGATAGACC 66340 |||||| || || | ||||| || || || || ||| | || || Sbjct 373358 ATGACCATTCGTACCAGCAATATATGAACCTGAGGCTCGGATGTTATGGACATTAAGGCC 373299 Query 66341 TATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTC 66400 || || || || | || ||||| | || || || | ||||| || || || || Sbjct 373298 AATCCCACCAGCAGTCTTGGAGATCATGGCACAAGACTTGAGGGTATCGTAAATTCCTTC 373239 Query 66401 TATACTATCATCCATCAT-GTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTC 66459 || |||||| |||| || ||| || ||||| || |||||||| | | || | Sbjct 373238 GATCGAGTCATCCTTCATAGTCAAG-AGGAAACAACTTGACATTTGAGGCCTTGGGGTCC 373180 Query 66460 CCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGA-AAGTAGATTGTAC 66518 | |||||||| | | | ||||| || |||||||| |||||||||| | |||| || || Sbjct 373179 CAGCATTAAACAGGATCGGAGATGCATGCGTAAAATATTTTTCAGACATGTAG-TTATAA 373121 Query 66519 GTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATG 66578 || ||||| || ||| |||||| ||| || || || || |||||||| | ||| Sbjct 373120 GTTTCAATGGCCTTGTCGATATCCTCACCATGGATCCCAACAGCAACACGCATGAGCATT 373061 Query 66579 TGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTT 66638 || ||||| || || || |||||| | || || | | ||| ||| ||||| || Sbjct 373060 TGTTGAGGCCTCTCTACTATCTTGCCATCGATCTTGAGGAGGTATGATCGTTCCAGGGTC 373001 Query 66639 TTAAAACCAAAATAGTTGTA--TGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTT 66696 ||||| || || ||||| | ||||| || || ||||| | || | |||||||| | Sbjct 373000 TTAAAGCCGAAGTAGTTAAAGTTGAAA--TCGCGATCGTAGACGATGGCTGAGTTGAGCT 372943 Query 66697 TATC 66700 ||| Sbjct 372942 GATC 372939 >seq1 Length=1854208 Score = 123 bits (136), Expect = 3e-23 Identities = 226/332 (68%), Gaps = 12/332 (4%) Strand=Plus/Minus Query 66270 ATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCACGAATATT---- 66325 || ||||| || | |||||||| || | || || ||| ||||||||| || Sbjct 982021 ATGCCATTCGAGTTGCCATTGGTTCCAGCAATGTATGATCCCGATGCACGAATTTTTTGG 981962 Query 66326 --ACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAAC 66383 |||||| ||| | || ||||| ||| || || | | |||| || || Sbjct 981961 AAACTAAT------ACCAACGCCGCCTGCAGCTTTGGAAATCAGAGAGCATGTCTTCAAG 981908 Query 66384 GTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATT 66443 || || ||||||||||| |||||||| || ||| | || || || ||||| ||||| Sbjct 981907 GTGTCGTAGATGCCCTCAATACTATCGTCTGCCATTTGAACTAAGAAGCAGCTTGACATC 981848 Query 66444 TGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCA 66503 || ||||| ||||| |||||||| || ||||||| || || ||||| ||||||| Sbjct 981847 TGAGGACGAGGTGTTCCAGCATTAAACAACGTAGGAGTCGCATGTGTAAAATATTTTTCG 981788 Query 66504 GAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCG 66563 || | | || || |||||||| || | || ||||| | ||| || || | ||| Sbjct 981787 GACATGAAGTTATATGTCTCAATTGCAGCATCAATATCACGGCCATGGATACCAATTGCA 981728 Query 66564 ACACGCATTAACATGTGCTGAGGTCTTTCAAC 66595 |||||||| | |||||| || || | ||||| Sbjct 981727 ACACGCATAATCATGTGTTGTGGACGCTCAAC 981696 >seq57 Length=574579 Score = 113 bits (124), Expect = 6e-20 Identities = 116/152 (76%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 36149 AACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAA 36208 |||| || || |||||||| ||| |||||||| || | || | ||||||||| Sbjct 521087 AACAATAAGCAGGCGAAATCAGTGTGGAGACCCTCATCACGCGAGATGAGTTCGTTGGAG 521028 Query 36209 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCA 36268 || || || || ||||| || ||||||||||| |||||||| ||||| || |||| ||| Sbjct 521027 AAGGTCAGACCAGGCATGAGACCACGCTTTTTGAGCCAAAAGATGGAAGCGAATGCGCCA 520968 Query 36269 GAAAAGAAAATTCCTTCTACTGCCGCAAAGGC 36300 || ||||| || ||||| || || |||||||| Sbjct 520967 GAGAAGAAGATGCCTTCAACAGCAGCAAAGGC 520936 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658171664651920