Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lobosporangium_20transversale_20[genbank_20GCA_5F002105155.1_202017- 04-20] 138 sequences; 42,768,949 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq47 242 5e-59 seq49 237 2e-57 seq57 116 5e-21 seq1 114 2e-20 >seq47 Length=818200 Score = 242 bits (268), Expect = 5e-59 Identities = 746/1143 (65%), Gaps = 8/1143 (1%) Strand=Plus/Minus Query 71707 GCCAGATTACAAACGGCTACCTCATTAGCATCGGCATATTGTATAATTTCAGTGCAAAGA 71766 |||| ||||| || ||||| || | | | | |||| | ||| || || || | | Sbjct 305480 GCCAAGTTACAGACCGCTACTTCGTCTGGACTGCTGTATTCAACAATCTCTGTACACAAA 305421 Query 71767 TTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTA 71826 ||||| |||||||| ||||| | || |||||||| || ||| || |||||||| Sbjct 305420 TTACTGCACTTGATCGTTCCAAGGTTCTGTTGATTCGATTTACGGTTGCAAGCATCCTTG 305361 Query 71827 TAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACT 71886 ||||| || | || ||||| || || |||| | || | ||| || | ||||| | | Sbjct 305360 TAAAGCATGTAAGGCGTACCGGTCTCGGTCTGGGCCTCCAGAATAGCATACCAGA-GTTT 305302 Query 71887 C-GAGCCTTTATTATATTCTTGTATCTCTTTTCTCTTTCGTATTGTGTATATAATCGTTC 71945 | | ||||| || | || | | || | || ||| | ||| | | || Sbjct 305301 CTGGGCCTTGATGGTCTTGCGGGCACGACCCTCACGCTCATATCGATGATAGAGTTCCTC 305242 Query 71946 GAACTCGTCTCCCCAAGCATTGTCTAATCCAGGACATTCATTCGGACACATCAATGACCA 72005 ||| || || ||||| ||| | | |||||| || ||||| | || ||| Sbjct 305241 GAATTCTTCGCCCCACACATCTTGAAGTCCAGGTGCCTCCGCAGGACAGAACAGACTCCA 305182 Query 72006 CTCTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AATA 72064 || | | || | | ||| |||| || |||||||| ||||| ||||| ||| || | Sbjct 305181 GTCAGCGTTTTCCTCGATACGTCTCATGAACAGATCAGGGATCCAGAGAGC-ATAGAACA 305123 Query 72065 GATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAA 72124 ||| | | | |||||| ||||| || ||||| |||||| ||||| | | | Sbjct 305122 AATCACGAGCACGGGTCTCCTCCTTTCCAGTGTTCTTGCGAAGATCCAGGAATTCAAAGA 305063 Query 72125 TATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGCCGTTTGTTTCCTCCCT 72184 ||| | |||||| ||||| | || ||||| | | || || || ||||| || |||| Sbjct 305062 CATCGGCATGCCAGGGTTCGAGATACATGGCAAAGGCACCAGGACGCTTGTTGCCGCCCT 305003 Query 72185 GATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATG 72244 |||| | || | ||| || || || || || | | ||| ||||| | |||||||| Sbjct 305002 GATCAACATAACGAGCCGTATTGTTGTAGACACGAAGCATAGGAATCAACCCATTGGAAT 304943 Query 72245 CACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTGCTAATTGATAGACCTA 72304 || || || || | || || || |||||||| ||| ||| ||||| | Sbjct 304942 ATCCGTTCGTTCCAGCAATGTATGAACCCGACGCACGAATGTTGTGAATATTAAGACCAA 304883 Query 72305 TTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTA 72364 | || || || |||| ||||| | || || || | ||||||||||| ||||| | Sbjct 304882 TGCCTCCAGCGGTTTTCGAGATCATGGCACAGGTCTTGAGGGTATCATAGATACCCTCGA 304823 Query 72365 TACTATCATCCATCAT-GTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCC 72423 | ||||||| |||| || || ||||| || | ||||| || | ||| ||||| Sbjct 304822 TCGAATCATCCTTCATCGTCAACAAGAAACAAGAT-GACATCTGAGGGCGAGGTGTTCCA 304764 Query 72424 GCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACA-GTAGATTGTACGT 72482 ||||| || | || || ||||| || || || |||||||||||| ||| |||||| || Sbjct 304763 GCATTGAAGAGCGTGGGCGAAGCATGGGTGAAGTATTTTTCAGACATGTA-ATTGTAGGT 304705 Query 72483 CTCAATAGCTGATTCTATATCCCATTGATGTATTCCTACCGCGACACGCATTAACATATG 72542 ||||||||| || | || | ||| || || |||| ||||||||| |||||||| Sbjct 304704 CTCAATAGCCTTGTCCACATTATCTCCATGGATCCCGACCGAGACACGCATCAACATATG 304645 Query 72543 CTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTT 72602 ||||||||| || | | |||| ||| || | | ||| || || | ||||| Sbjct 304644 CTGAGGTCTCTCCGCAACCTTGCCATTGATCCGGAGAAGGTAAGAGCGCTCAAGGGTTTT 304585 Query 72603 AAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAATTGAGTTTATC 72662 || ||||| || ||||| ||||| || ||||| || || |||| ||||| || Sbjct 304584 GAATCCAAAGTAATTGTAATTGAAGTCACGATCGTAGATGATTGCCGAGTTGAGGCGTTC 304525 Query 72663 CTTATATTTGTTAACTATATCCATGGTGATACTTGAAATAATCGGAGAATGTTTCCCATT 72722 || || |||| | | ||| | || || || | | || || ||| | Sbjct 304524 TGCATTCTTCATAACATTGTTATAGGTTGTCTCGGAGATCATGGAGGCATTCTTGCCAGT 304465 Query 72723 TTTAGGATTAACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGtttttttGTTTC 72782 || || |||| ||| ||| | | ||| || | ||| | | || | || || || || Sbjct 304464 CTTGGGGTTAATATACTTGTAGAGATCTTCGACCACCTGAGAGAAAACCTTCTTGGTCTC 304405 Query 72783 CTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATGGCATAATCTGGATGTTGTGT 72842 || || ||||| || || || || | || || || ||||||||||| ||||| | ||| Sbjct 304404 TTTATGAAGATTGGAAACAGCGATACGAGCAGCAAGGATGGCATAATCGGGATGCTTTGT 304345 Query 72843 AGT 72845 || Sbjct 304344 GGT 304342 >seq49 Length=746914 Score = 237 bits (262), Expect = 2e-57 Identities = 641/966 (66%), Gaps = 20/966 (2%) Strand=Plus/Minus Query 71707 GCCAGATTACAAACGGCTACCTCATTAGCATCGGCATATTGTATAATTTCAGTGCAAAGA 71766 |||| ||||| || || ||||||| || | |||| || || || || || ||| Sbjct 373894 GCCAAGTTACAGACAGCGACCTCATCAGGGCTGCTGTATTCGATGATCTCTGTACAGAGA 373835 Query 71767 TTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTA 71826 |||||||||||||| || || || || |||||||| ||| |||||| ||||| ||| Sbjct 373834 TTACTACACTTGATAGTCCCCAAGTTCTGTTGATTCGACTTGCGGTTACAGGCATCTTTA 373775 Query 71827 TAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACT 71886 ||||| ||| | || || ||||| || | |||| || | || || ||| | | | Sbjct 373774 TAAAGCATATAGGGCGTTCCAGTCTCTGTTTGAGCCTCCAGGATTGCGAACCACA-GCTT 373716 Query 71887 C-GAGCCTTTATTATATTCTTGT-ATCTCTT--TTCTCTTTCGTATTGTGTATATAATCG 71942 | ||||||| || | |||| | | | | ||| ||||| |||| | | Sbjct 373715 CTGAGCCTTGAT---AGTCTTACGAGCCCGTCCTTCCAGCTCGTAGGTCATATAGAGTTT 373659 Query 71943 TTCGAACTCGTCTCCCCAAGCATTGTCTAATCCAGGACATTCATTCGGACACATCAATGA 72002 || ||||| || ||||| ||| | || ||||| ||| ||||| | | Sbjct 373658 CTCAAACTCTTCGCCCCAGACATCTTGTAGACCAGGCGCCTCAGCAGGACAAAAGAGACT 373599 Query 72003 CCACTCTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAA 72062 ||| || |||| | | | ||||||||| || || ||||| ||||| || | | || Sbjct 373598 CCAATCGCCATTCTGTTCAATTCGTTTCATGAACAGGTCAGGGATCCAGAGTCCCAGGAA 373539 Query 72063 TAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCAT 72122 | |||| | | | ||| || || ||||||||||| ||| || | || | | Sbjct 373538 CAAGTCTCGAGCACGAGTCTCTTCCTTGCCTGTATTCTTGCGAAGGTCCAAAAAATCAAA 373479 Query 72123 AATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGCCGTTTGTTTCCTCC 72182 | || | |||||| |||||||| || ||||| | |||| ||||| |||||||| || Sbjct 373478 CACGTCCGCATGCCAAGGTTCCAAATACATGGCAAAGGCTCCTGGCCGCTTGTTTCCACC 373419 Query 72183 CTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGA 72242 ||||||| ||||| ||||| || ||| | || |||||||| || || | || || || Sbjct 373418 TTGATCTACATATCTCGCGGTATTGTTAAATACCCTCAACATAGGGATCAATCCGTTAGA 373359 Query 72243 TGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATT--GCTAATTGATAGA 72300 |||||| || || | ||||| || ||| || || || | ||| | | Sbjct 373358 ATGACCATTCGTACCAGCAATATATGAACCTGAGGCTCGGATGTTATGGACATTAA--GG 373301 Query 72301 CCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCC 72360 || || || || || | || ||||| | || || || | ||||| || || || Sbjct 373300 CCAATCCCACCAGCAGTCTTGGAGATCATGGCACAAGACTTGAGGGTATCGTAAATTCCT 373241 Query 72361 TCTATACTATCATCCATCAT-GTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGT 72419 || || |||||| |||| || ||| || ||||| || |||||||| | | || Sbjct 373240 TCGATCGAGTCATCCTTCATAGTCAAG-AGGAAACAACTTGACATTTGAGGCCTTGGGGT 373182 Query 72420 TCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACA-GTAGATTGT 72478 || |||||||| | | | ||||| || |||||||| |||||||||||| |||| || | Sbjct 373181 CCCAGCATTAAACAGGATCGGAGATGCATGCGTAAAATATTTTTCAGACATGTAG-TTAT 373123 Query 72479 ACGTCTCAATAGCTGATTCTATATCCCATTGATGTATTCCTACCGCGACACGCATTAACA 72538 | || ||||| || || |||||| ||| || || || || |||||||| | || Sbjct 373122 AAGTTTCAATGGCCTTGTCGATATCCTCACCATGGATCCCAACAGCAACACGCATGAGCA 373063 Query 72539 TATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCAAAG 72598 | || ||||| || || || |||||| || || || | | ||| ||| ||||| | Sbjct 373062 TTTGTTGAGGCCTCTCTACTATCTTGCCATCGATCTTGAGGAGGTATGATCGTTCCAGGG 373003 Query 72599 TTTTAAAACCAAAATAGTTGTA--TGAAAAGTCTCGTTCGTAAATAATAACCGAATTGAG 72656 | ||||| || || ||||| | ||||| || || ||||| | || | || ||||| Sbjct 373002 TCTTAAAGCCGAAGTAGTTAAAGTTGAAA--TCGCGATCGTAGACGATGGCTGAGTTGAG 372945 Query 72657 TTTATC 72662 | ||| Sbjct 372944 CTGATC 372939 >seq57 Length=574579 Score = 116 bits (128), Expect = 5e-21 Identities = 117/152 (77%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 42056 AACATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAA 42115 |||| || || |||||||| ||| ||||||||||| | || | ||||||||| Sbjct 521087 AACAATAAGCAGGCGAAATCAGTGTGGAGACCCTCATCACGCGAGATGAGTTCGTTGGAG 521028 Query 42116 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCA 42175 || || || || ||||| || ||||||||||| |||||||| || || || |||| ||| Sbjct 521027 AAGGTCAGACCAGGCATGAGACCACGCTTTTTGAGCCAAAAGATGGAAGCGAATGCGCCA 520968 Query 42176 GAAAAGAAGATTCCTTCTACTGCCGCAAAGGC 42207 || |||||||| ||||| || || |||||||| Sbjct 520967 GAGAAGAAGATGCCTTCAACAGCAGCAAAGGC 520936 >seq1 Length=1854208 Score = 114 bits (126), Expect = 2e-20 Identities = 176/251 (70%), Gaps = 0/251 (0%) Strand=Plus/Minus Query 72307 CCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATA 72366 || ||||| ||| || || | | |||| || || || || ||||||||||| ||| Sbjct 981946 CCGCCTGCAGCTTTGGAAATCAGAGAGCATGTCTTCAAGGTGTCGTAGATGCCCTCAATA 981887 Query 72367 CTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCA 72426 ||||| || ||| | || || || ||||| ||||| || ||||| ||||| ||| Sbjct 981886 CTATCGTCTGCCATTTGAACTAAGAAGCAGCTTGACATCTGAGGACGAGGTGTTCCAGCA 981827 Query 72427 TTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCA 72486 ||||| || ||||||| || || ||||| ||||||| |||| | || || |||||| Sbjct 981826 TTAAACAACGTAGGAGTCGCATGTGTAAAATATTTTTCGGACATGAAGTTATATGTCTCA 981767 Query 72487 ATAGCTGATTCTATATCCCATTGATGTATTCCTACCGCGACACGCATTAACATATGCTGA 72546 || || | || ||||| | ||| || || | || |||||||| | ||| || || Sbjct 981766 ATTGCAGCATCAATATCACGGCCATGGATACCAATTGCAACACGCATAATCATGTGTTGT 981707 Query 72547 GGTCTTTCAAC 72557 || | ||||| Sbjct 981706 GGACGCTCAAC 981696 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671138042284880