Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lobosporangium_20transversale_20[genbank_20GCA_5F002105155.1_202017- 04-20] 138 sequences; 42,768,949 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq57 170 3e-37 seq49 141 1e-28 >seq57 Length=574579 Score = 170 bits (188), Expect = 3e-37 Identities = 220/304 (72%), Gaps = 0/304 (0%) Strand=Plus/Plus Query 124995 CTGTTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTT 125054 || || ||||||| || ||||| | ||| | |||||||| |||||| | || ||||| Sbjct 520159 CTCTTCCCCATCAAGTTCCATGAGGTCTGGCAGATGTACAAGAAGGCTGAAGCATCCTTC 520218 Query 125055 TGGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACT 125114 ||||| | || || || ||||| ||||||||| || | || ||||| | |||||||| Sbjct 520219 TGGACTGCTGAGGAAGTAGATCTTTCCAAGGACATGCATGACTGGGAAAACCGTTTGACA 520278 Query 125115 GAAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATC 125174 ||| ||| ||| || | || ||||| ||||||||||||| | |||||| || Sbjct 520279 GAAGATGAACGATTCTTCGTTTCACACATCCTGGCCTTCTTTGCTGCTAGCGATGGTATT 520338 Query 125175 GTCAACGACAATCTGTTGACACGATTCTCTCAAGAGTTGACCATTCCAGAGGTGTCGTGC 125234 || || || || || ||| ||| ||||| | ||| | || || || | ||| Sbjct 520339 GTGAATGAGAACCTCTTGGAACGTTTCTCGAATGAGGTCCAGATCCCTGAAGCAAGATGC 520398 Query 125235 TTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATT 125294 ||||| || |||||||||||||||||||| || || || || ||||||||| || ||| Sbjct 520399 TTTTATGGCTTCCAAATCATGATTGAGAATGTTCATTCAGAGATGTACTCTCTTCTCATT 520458 Query 125295 GACA 125298 |||| Sbjct 520459 GACA 520462 Score = 109 bits (120), Expect = 8e-19 Identities = 288/432 (67%), Gaps = 17/432 (4%) Strand=Plus/Plus Query 125428 TGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTT 125487 |||| || || || || || || ||||||||||| || || || || ||||||||| Sbjct 520931 TGGTCGCCTTTGCTGCTGTTGAAGGCATCTTCTTCTCTGGCGCATTCGCTTCCATCTTTT 520990 Query 125488 GGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAG 125547 ||||||| ||||| || |||||||| || ||||| | ||||| | || || || | Sbjct 520991 GGCTCAAAAAGCGTGGTCTCATGCCTGGTCTGACCTTCTCCAACGAACTCATCTCGCGTG 521050 Query 125548 ACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTTTCGCAACTATCTGCG-TCCCGAG 125606 | ||||| || ||| ||| || ||| | || | ||| || | || | || | | Sbjct 521051 ATGAGGGTCTCCACACTGATTTCGCC-TGCTTATTGTTCTCA--TTGTTGAGATCTC--G 521105 Query 125607 TGCAGATCCAGCGATGAAAAGGTCATCAA---CATTGTAACCGATGCCGTGAGGATAGAA 125663 | | || ||| |||| || |||| || | || || || || ||| ||| Sbjct 521106 TCCTGA-CCA------AAAACGT-GTCAATGCTATCATTACAGAGGCTGTTGTGATCGAA 521157 Query 125664 CAAGAGTTTCTAACCGAATCCCTACCGGTCAGCATGATTGGCATGAACTGCAAGCTAATG 125723 |||||||| | ||||| | || || || | ||||||| ||||| |||| | ||| Sbjct 521158 CAAGAGTTCTTGACCGATGCTCTCCCTGTGATGTTGATTGGTATGAATGCCAAGTTGATG 521217 Query 125724 TGCGAGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTTGATTGGCCGCAAGATT 125783 | ||||| ||||||||||| |||||||| || || | | || || | Sbjct 521218 AAACAATACATTGAGTTTGTGGCCGATCGTCTCTTGGTCGCGCTCGGAAACCCAAAACAT 521277 Query 125784 TACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCACTAGAGGGTAAGACCAAC 125843 ||||| | ||||||| ||||| || ||| | || || || |||| ||||||||| Sbjct 521278 TACAATGTTGAGAATCCTTTTGACTTTATGGACTTGATCTCTCTTCAGGGCAAGACCAAC 521337 Query 125844 TTTTTCGAGAAG 125855 || || |||||| Sbjct 521338 TTCTTTGAGAAG 521349 >seq49 Length=746914 Score = 141 bits (156), Expect = 1e-28 Identities = 296/436 (68%), Gaps = 4/436 (1%) Strand=Plus/Plus Query 96876 CAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGAC 96935 || || || || || |||||||| || | ||| | || |||||||||||||| |||||| Sbjct 373416 CAAGGTGGAAACAAGCGGCCAGGAGCCTTTGCCATGTATTTGGAACCTTGGCATGCGGAC 373475 Query 96936 GTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGAC 96995 || ||||| ||| | || | ||||| || | ||| |||||| | || || | ||| Sbjct 373476 GTGTTTGATTTTTTGGACCTTCGCAAGAATACAGGCAAGGAAGAGACTCGTGCTCGAGAC 373535 Query 96996 TTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGACGGTGGCTAC 97055 ||||| | ||||||| | || || |||||||||| || | | | |||| | Sbjct 373536 TTGTTCCTGGGACTCTGGATCCCTGACCTGTTCATGAAACGAATTGAACAGAATGGCGAT 373595 Query 97056 TGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGCGAAGAGTTT 97115 ||||| || | || || | | | || ||||| ||| |||||||||||||||| Sbjct 373596 TGGAGTCTCTTTTGTCCTGCTGAGGCGCCTGGTCTACAAGATGTCTGGGGCGAAGAGTTT 373655 Query 97116 GAGGCCAAGTACACGGCCTACGAGCAAG-AGGGCCGATACGTGAGACGAGTCGATGCACG 97174 ||| || | | ||||||||| | ||| | | ||| |||| | || | || | Sbjct 373656 GAGAAACTCTATATGACCTACGAGCTGGAAGGACGGGCTCGTAAGACTA-TCAAGGCTC- 373713 Query 97175 AGAA-CTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATTCTCT 97233 |||| |||||| || ||| || |||||| |||||||||||| || || || || | Sbjct 373714 AGAAGCTGTGGTTCGCAATCCTGGAGGCTCAAACAGAGACTGGAACGCCCTATATGCTTT 373773 Query 97234 ACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATCAAGGGCTCCA 97293 | || ||| || || ||||| || |||| ||||||| || |||||| | | Sbjct 373774 ATAAAGATGCCTGTAACCGCAAGTCGAATCAACAGAACTTGGGGACTATCAAGTGTAGTA 373833 Query 97294 ATCTGTGCACGGAAAT 97309 |||| || || || || Sbjct 373834 ATCTCTGTACAGAGAT 373849 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741057921672880