Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lobosporangium_20transversale_20[genbank_20GCA_5F002105155.1_202017- 04-20] 138 sequences; 42,768,949 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq53 140 7e-28 seq57 114 3e-20 seq84 113 1e-19 >seq53 Length=681236 Score = 140 bits (154), Expect = 7e-28 Identities = 161/214 (75%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| ||||| || | || ||||| |||||||||||||||||||| || || | || || Sbjct 252598 AAGAACTAGGTGGAGGGTGGATTCCTTCTGAATATTATAGTCAGAGAGCGTGCGGCCATC 252657 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 || || |||||||| || ||||| || | ||| || || ||||| || ||||| || || Sbjct 252658 CTCAAGCTGTTTTCCGGCGAAAATAAGACGCTGCTGGTCTGGAGGAATACCTTCCTTGTC 252717 Query 104467 CTGAATCTT-TGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAG 104525 ||||||||| ||| || || || || | ||| ||| || || || || | || || | Sbjct 252718 CTGAATCTTCTGC-TTGACGTTGTCGATGGTGTCGGAAGACTCAACTTCCAAAGTGATTG 252776 Query 104526 TCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 |||| ||||| ||||| || || || |||||||| Sbjct 252777 TCTTGCCAGTGAGTGTCTTGACGAAAATCTGCAT 252810 Score = 136 bits (150), Expect = 9e-27 Identities = 153/205 (75%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || || ||||||||||| || || || || | || ||||| ||||| |||||| Sbjct 253070 GTCGACTCCTTTTGAATATTATAATCGGAAAGCGTACGTCCATCTTCAAGTTGCTTTCCA 253129 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || || | ||| || || ||||| || ||||| || ||||| || || ||| Sbjct 253130 GCAAAGATGAGACGCTGCTGGTCTGGAGGAATACCTTCCTTGTCCTGGATTTTCTGTTTA 253189 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||| || | || ||| | |||||||| | ||||| ||||| || || ||||| Sbjct 253190 ACATTGTCGATAGTGTCGGAGGACTCTACCTCCAAAGTAATGGTCTTGCCGGTGAGTGTC 253249 Query 104543 TTTACAAATATCTGCATTTTGTGTA 104567 || ||||| ||||||||||| |||| Sbjct 253250 TTGACAAAAATCTGCATTTTATGTA 253274 Score = 125 bits (138), Expect = 2e-23 Identities = 148/198 (75%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 ||||| || || || ||||| |||||||| || || | ||| || || || |||||||| Sbjct 252158 GTAGACTCCTTTTGGATATTGTAGTCAGAGAGCGTGCGACCATCCTCAAGCTGTTTTCCG 252217 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTT-TGCTTT 104481 || ||||| || | ||| || || ||||| || ||||| || ||||||||||| ||| || Sbjct 252218 GCGAAAATAAGACGCTGCTGGTCTGGAGGAATACCTTCCTTGTCCTGAATCTTCTGC-TT 252276 Query 104482 TACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGT 104541 || || || | ||| ||| || || || || | || || ||||| ||||| ||||| Sbjct 252277 GACGTTGTCGATGGTGTCGGAAGACTCAACTTCCAAAGTGATTGTCTTGCCAGTGAGTGT 252336 Query 104542 TTTTACAAATATCTGCAT 104559 || || || |||||||| Sbjct 252337 CTTGACGAAAATCTGCAT 252354 Score = 107 bits (118), Expect = 4e-18 Identities = 144/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 ||||| || || || ||||| |||||||| || || | ||| ||||| || |||||||| Sbjct 252386 GTAGACTCCTTTTGGATATTGTAGTCAGAGAGCGTACGACCATCTTCAAGCTGTTTTCCG 252445 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTT-TGCTTT 104481 || || || || | ||| || || || || || ||||| || ||||||||||| ||| || Sbjct 252446 GCGAAGATGAGGCGCTGCTGGTCTGGGGGAATACCTTCCTTGTCCTGAATCTTCTGC-TT 252504 Query 104482 TACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGT 104541 || || || | ||| ||| | || || || | || ||||| ||||| || | || Sbjct 252505 GACGTTATCGATGGTGTCGGAGGACTCAACTTCCAAAGTGATAGTTTTACCGGTTAAAGT 252564 Query 104542 TTTTACAAATATCTGCAT 104559 || || || |||||||| Sbjct 252565 CTTGACGAAAATCTGCAT 252582 Score = 107 bits (118), Expect = 4e-18 Identities = 144/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 ||||| || || || ||||| |||||||| || || | ||| ||||| || |||||||| Sbjct 252842 GTAGACTCCTTTTGGATATTGTAGTCAGAGAGCGTACGACCATCTTCAAGCTGTTTTCCG 252901 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTT-TGCTTT 104481 || || || || | ||| || || || || || ||||| || ||||||||||| ||| || Sbjct 252902 GCGAAGATGAGGCGCTGCTGGTCTGGGGGAATACCTTCCTTGTCCTGAATCTTCTGC-TT 252960 Query 104482 TACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGT 104541 || || || | ||| ||| | || || || | || ||||| ||||| || | || Sbjct 252961 GACGTTATCGATGGTGTCGGAGGACTCAACTTCCAAAGTGATAGTTTTACCGGTTAAAGT 253020 Query 104542 TTTTACAAATATCTGCAT 104559 || || || |||||||| Sbjct 253021 CTTGACGAAAATCTGCAT 253038 >seq57 Length=574579 Score = 114 bits (126), Expect = 3e-20 Identities = 192/277 (69%), Gaps = 3/277 (1%) Strand=Plus/Plus Query 268741 GATGTACAAACAGGCCGTTGCTTCTTTTTGGACTGTAGAAGAAGTAGATCTGTCTTATGA 268800 ||||||||| |||| | || || || ||||||| || ||||||||||| || | || Sbjct 520191 GATGTACAAGAAGGCTGAAGCATCCTTCTGGACTGCTGAGGAAGTAGATCTTTCCAAGGA 520250 Query 268801 CTTAATAGATTGGAAAAA---TTTAAAACCAGAAGAAAGAAGATTTATATCTTATATTCT 268857 | | || ||| |||| ||| | | ||| ||| || || | || | || || Sbjct 520251 CATGCATGACTGGGAAAACCGTTTGACAGAAGATGAACGATTCTTCGTTTCACACATCCT 520310 Query 268858 TGCGTTTTTTGCAGTTAGTGATGGTATCGTTAACGAAAATCTAGTAGAGAAGTTCTGTCA 268917 || || ||||| | ||| |||||||| || || || || || | || |||| | Sbjct 520311 GGCCTTCTTTGCTGCTAGCGATGGTATTGTGAATGAGAACCTCTTGGAACGTTTCTCGAA 520370 Query 268918 AGAGGTACAGATTCCTGAAGCCAGATGTTTTTACGGATTCCAGATAGCTATAGAAAATAT 268977 ||||| ||||| |||||||| ||||| ||||| || ||||| || || || ||| | Sbjct 520371 TGAGGTCCAGATCCCTGAAGCAAGATGCTTTTATGGCTTCCAAATCATGATTGAGAATGT 520430 Query 268978 TCATTCAGAGATGTACAGTCTATTAATAGATACTTAT 269014 |||||||||||||||| ||| | || || || ||| Sbjct 520431 TCATTCAGAGATGTACTCTCTTCTCATTGACACCTAT 520467 >seq84 Length=1068272 Score = 113 bits (124), Expect = 1e-19 Identities = 153/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 104350 TACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTC 104409 ||| | ||| | || || || |||||||| ||||||||||| || || | || || || Sbjct 721565 TACCAAATGAAGGGTGGACTCCTTCTGAATGTTATAGTCAGAAAGGGTACGGCCATCCTC 721506 Query 104410 TAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTG 104469 || || || ||||||||||| || | ||| || || || || || || || ||||| || Sbjct 721505 AAGCTGCTTGCCAGCAAAAATGAGGCGCTGCTGGTCTGGGGGAATACCCTCCTTATCTTG 721446 Query 104470 AATCTT-TGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCT 104528 ||||| ||| || ||||| || | |||||| | ||| ||||| || || || |||| Sbjct 721445 GATCTTCTGC-TTGACATTGTCAATGGTATCAGAGGATTCGACCTCAAGGGTGATGGTCT 721387 Query 104529 TACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 | || || | || || || || |||||||| Sbjct 721386 TGCCGGTCAAGGTCTTGACGAAAATCTGCAT 721356 Score = 98.7 bits (108), Expect = 2e-15 Identities = 142/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 ||||| || ||||| || ||||||||||| ||||| | || || || || || || || Sbjct 720868 GTAGACTCCTTCTGGATGTTATAGTCAGAGAGAGTACGGCCATCCTCAAGCTGCTTACCG 720809 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTT-TGCTTT 104481 ||||| || || | ||| || || || || || || || || || || ||||| ||| || Sbjct 720808 GCAAAGATGAGACGCTGCTGGTCTGGGGGAATACCCTCCTTGTCTTGGATCTTCTGC-TT 720750 Query 104482 TACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGT 104541 || || || | ||| ||| | || ||||| || || || ||||| || || || || Sbjct 720749 GACGTTGTCAATGGTGTCGGAGGACTCGACCTCAAGGGTGATGGTCTTGCCGGTGAGAGT 720690 Query 104542 TTTTACAAATATCTGCAT 104559 || || || |||||||| Sbjct 720689 CTTAACGAAGATCTGCAT 720672 Score = 98.7 bits (108), Expect = 2e-15 Identities = 142/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 ||||| || ||||| || ||||||||||| || || | || || || || || || || Sbjct 721096 GTAGACTCCTTCTGGATGTTATAGTCAGAAAGGGTACGGCCATCCTCAAGCTGCTTGCCG 721037 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTT-TGCTTT 104481 ||||| || || | ||| || || || || || || ||||| || || ||||| ||| || Sbjct 721036 GCAAAGATGAGACGCTGCTGGTCTGGGGGAATACCCTCTTTGTCTTGGATCTTCTGC-TT 720978 Query 104482 TACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGT 104541 ||||| || | |||||| | || ||||| || || || ||||| || || | || Sbjct 720977 GACATTGTCAATGGTATCAGAGGACTCGACCTCGAGGGTGATGGTCTTGCCGGTCAAGGT 720918 Query 104542 TTTTACAAATATCTGCAT 104559 || || || |||||||| Sbjct 720917 CTTGACGAAAATCTGCAT 720900 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151396364183704