Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lobosporangium_20transversale_20[genbank_20GCA_5F002105155.1_202017- 04-20] 138 sequences; 42,768,949 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq84 114 1e-20 seq53 100 3e-16 >seq84 Length=1068272 Score = 114 bits (126), Expect = 1e-20 Identities = 155/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 ||||| ||||| || | ||||| ||||| || | |||||| || | ||| | | Sbjct 720886 CGCAAGACCAAATGAAGGGTAGACTCCTTCTGGATGTTATAGTCAGAGAGAGTACGGCCA 720827 Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 ||||| ||||| || ||| ||||||| | | ||||| ||||| |||||||| || ||| Sbjct 720826 TCCTCAAGCTGCTTACCGGCAAAGATGAGACGCTGCTGGTCTGGGGGAATACCCTCCTTG 720767 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | || || ||||||| | | | ||||| | | ||||| |||| |||||| Sbjct 720766 TCTTGGATCTTCTGCTTGACGTTGTCAATGGTGTCGGAGGACTCGACCTCAAGGGTGATG 720707 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATG 95008 || || || || ||||| || || |||||||||||| Sbjct 720706 GTCTTGCCGGTGAGAGTCTTAACGAAGATCTGCATG 720671 Score = 100 bits (110), Expect = 3e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 |||| ||||||||| | ||| || ||||| || | ||| |||||| | || | | Sbjct 721342 CGCAGCACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAATCGGAGAGGGTACGGCCA 721283 Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 || |||| ||| || ||| | || || | | ||||| ||||||||||| ||||| || Sbjct 721282 TCTTCCAACTGCTTGCCGGCGAAAATGAGGCGCTGCTGGTCTGGAGGAATGCCTTCCTTA 721223 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | ||| || ||||||| ||| ||||||| | ||||| |||| |||||| Sbjct 721222 TCTTGAATCTTCTGCTTGACGTTATCGATCGTGTCAGAGGACTCGACCTCAAGGGTGATG 721163 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || || || | || || || || |||||||| Sbjct 721162 GTCTTGCCGGTCAAGGTCTTGACGAAAATCTGCAT 721128 >seq53 Length=681236 Score = 100 bits (110), Expect = 3e-16 Identities = 150/211 (71%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA--ATCCT 94856 |||||||| | ||||| |||||||| | || || || | || || || ||||| Sbjct 252146 ACCAAGTGAAGGGTAGACTCCTTTTGGATATTGTAGTCAG--AGAGCGTGCGACCATCCT 252203 Query 94857 CCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCAT 94916 | |||||||||||| | || || | | ||||| ||||||||||||||||| ||||| | Sbjct 252204 CAAGCTGTTTTCCGGCGAAAATAAGACGCTGCTGGTCTGGAGGAATACCTTCCTTGTCCT 252263 Query 94917 AAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTT 94976 ||| || ||||||| | ||| ||||| | || || || | ||||| || | Sbjct 252264 GAATCTTCTGCTTGACGTTGTCGATGGTGTCGGAAGACTCAACTTCCAAAGTGATTGTCT 252323 Query 94977 TTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | ||||| || || || || || |||||||| Sbjct 252324 TGCCAGTGAGTGTCTTGACGAAAATCTGCAT 252354 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/211 (71%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA--ATCCT 94856 |||||||| | ||||| |||||||| | || || || | || || || ||| | Sbjct 252374 ACCAAGTGAAGGGTAGACTCCTTTTGGATATTGTAGTCAG--AGAGCGTACGACCATCTT 252431 Query 94857 CCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCAT 94916 | |||||||||||| | ||||| | | ||||| ||||| ||||||||||| ||||| | Sbjct 252432 CAAGCTGTTTTCCGGCGAAGATGAGGCGCTGCTGGTCTGGGGGAATACCTTCCTTGTCCT 252491 Query 94917 AAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTT 94976 ||| || ||||||| ||| ||||| | | || || || | ||||| |||| Sbjct 252492 GAATCTTCTGCTTGACGTTATCGATGGTGTCGGAGGACTCAACTTCCAAAGTGATAGTTT 252551 Query 94977 TTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | || || | ||| || || || |||||||| Sbjct 252552 TACCGGTTAAAGTCTTGACGAAAATCTGCAT 252582 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/211 (71%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA--ATCCT 94856 |||||||| | ||||| |||||||| | || || || | || || || ||| | Sbjct 252830 ACCAAGTGAAGGGTAGACTCCTTTTGGATATTGTAGTCAG--AGAGCGTACGACCATCTT 252887 Query 94857 CCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCAT 94916 | |||||||||||| | ||||| | | ||||| ||||| ||||||||||| ||||| | Sbjct 252888 CAAGCTGTTTTCCGGCGAAGATGAGGCGCTGCTGGTCTGGGGGAATACCTTCCTTGTCCT 252947 Query 94917 AAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTT 94976 ||| || ||||||| ||| ||||| | | || || || | ||||| |||| Sbjct 252948 GAATCTTCTGCTTGACGTTATCGATGGTGTCGGAGGACTCAACTTCCAAAGTGATAGTTT 253007 Query 94977 TTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | || || | ||| || || || |||||||| Sbjct 253008 TACCGGTTAAAGTCTTGACGAAAATCTGCAT 253038 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 94811 GTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCG 94870 || |||||||| || | ||||| || | ||| | |||||| |||||||||||| Sbjct 252614 GTGGATTCCTTCTGAATATTATAGTCAGAGAGCGTGCGGCCATCCTCAAGCTGTTTTCCG 252673 Query 94871 CCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTG 94930 | || || | | ||||| ||||||||||||||||| ||||| | ||| || |||| Sbjct 252674 GCGAAAATAAGACGCTGCTGGTCTGGAGGAATACCTTCCTTGTCCTGAATCTTCTGCTTG 252733 Query 94931 ACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTT 94990 ||| | ||| ||||| | || || || | ||||| || || ||||| || || Sbjct 252734 ACGTTGTCGATGGTGTCGGAAGACTCAACTTCCAAAGTGATTGTCTTGCCAGTGAGTGTC 252793 Query 94991 TTCACAAAGATCTGCAT 95007 || || || |||||||| Sbjct 252794 TTGACGAAAATCTGCAT 252810 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/211 (70%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA--ATCCT 94856 |||||||| | || || |||||||| | ||||||||| | || || | ||| | Sbjct 253058 ACCAAGTGAAGGGTCGACTCCTTTTGAATATTATAATCGG--AAAGCGTACGTCCATCTT 253115 Query 94857 CCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCAT 94916 | || || ||||| ||||||| | | ||||| ||||||||||||||||| ||||| | Sbjct 253116 CAAGTTGCTTTCCAGCAAAGATGAGACGCTGCTGGTCTGGAGGAATACCTTCCTTGTCCT 253175 Query 94917 AAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTT 94976 ||||| || || | ||| |||||| | | || || || | || ||||| | Sbjct 253176 GGATTTTCTGTTTAACATTGTCGATAGTGTCGGAGGACTCTACCTCCAAAGTAATGGTCT 253235 Query 94977 TTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | || || || || || ||||| |||||||| Sbjct 253236 TGCCGGTGAGTGTCTTGACAAAAATCTGCAT 253266 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448290426697680