Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lobosporangium_20transversale_20[genbank_20GCA_5F002105155.1_202017- 04-20] 138 sequences; 42,768,949 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq47 264 1e-65 seq49 233 2e-56 seq57 134 2e-26 >seq47 Length=818200 Score = 264 bits (292), Expect = 1e-65 Identities = 1289/2030 (63%), Gaps = 27/2030 (1%) Strand=Plus/Minus Query 62025 GTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTC 62084 || || ||||| ||||| ||||| || | || | ||||||| ||||| ||| | Sbjct 306359 GTTCGAAGATAATACATCCCCGTCTTCAACCCCCGCTTCCATCCATAAAACGCCATCGAC 306300 Query 62085 GTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATG 62144 || | || |||| || ||| || |||||||||||||| |||||| |||||| || Sbjct 306299 GTCAACTTTCCATAATTCACATCCGCCATATGGATATTCATCGATTGAGATTGATCAATA 306240 Query 62145 AAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTT 62204 || || |||| ||| || ||||| | || | | |||||||| ||| ||||| | || Sbjct 306239 AATGCCCCCCGGTCCGCTGCCATATCAATTACCACCTTTTGTGAAATCTCCCACGTGGTC 306180 Query 62205 TTATAAACTCGCTTAATATCTTCTGGAAGGTTTGT-AT--TCTGAATGGATCCACCATCT 62261 || || | ||| | ||| || |||| | | || ||||||| ||||| ||| Sbjct 306179 TTGTACAGCGCCTTCAAATCATCCGGAATACTCGGGATCCTCTGAATCGATCCGTTCTCT 306120 Query 62262 GCCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGG 62321 || || |||| ||||| | | ||| ||||| | | |||| || | | | Sbjct 306119 GCAATGATCCGGTTCTTCAGTTGATCGTTCCACAGTCCCATCTCCACCAAGTCCTTCAAC 306060 Query 62322 AGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTG 62381 | |||||| || | || || ||||| | | |||| || ||||| |||||| | Sbjct 306059 ATCCACGGATTCACAATCTGGAACTCTCCCGCAAGCACTCGACGTGTGTAGATATTAGAG 306000 Query 62382 GTATACGGTTCCACCGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATA 62441 ||||| || || | | ||||| |||| || || | || || || || ||||| Sbjct 305999 GTATAGGGCTCGAAACATTCATTGAAACCCAGGATCTGTGAGGTCGAAGCCGTAGGCATC 305940 Query 62442 GGTGCCACCAATAAACTATTTCTAAGACCGTA-TGTTCTGATTTTATCTTTTAGAGGTTC 62500 ||||||||||| | || | | || | || | |||| | | || | || Sbjct 305939 GGTGCCACCAAGAGTGAGTTGCGCACTCCATGCTGCT-TGATACTGGCCCGGAGCGTATC 305881 Query 62501 CCAATTCCAAAGATCCGACGGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACT 62560 ||| | ||| ||||| || || || ||| | || || || Sbjct 305880 CCAGTCCCAGAGATCGGAGGGCGTTACCCCCCACATGTCCGGTTGCAAGATTCCCTTCGA 305821 Query 62561 GGCGTACGATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGC 62620 || || || |||| || || || | || |||| || ||| | ||||| | Sbjct 305820 AACGGGTGAGCCCTCATAGGTCTCATAAGTACCCTCCTCCTGAGCCATCTCACAGGATGA 305761 Query 62621 CTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAG 62680 || || || | | ||| ||||| ||||| |||| ||| || | | |||| || | Sbjct 305760 TTCCAAAGCCGCATGATAGATGGTCTCGAAAATCTGCTTGTTCAACTGACGTGCCTCGGG 305701 Query 62681 GCTATCAAATGG-ATA---ATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAA 62736 ||||| || || || | |||| || ||||||| || || ||||| | Sbjct 305700 TGAGTCAAAGGGCATGCGCATCTTGATGAAT----GCATCCGCTAGACCCTGGACACCCA 305645 Query 62737 TACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAA 62796 ||| | ||| | ||| | ||| || || || || ||||||| |||||| || || Sbjct 305644 CACCCACAGGACGATGACGCTTGTTGGACCGCTCTGCCTCTGGAACAGGATAGTAGTTCT 305585 Query 62797 TATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAA 62856 ||| ||||| || || | || | | | || ||| || | | || | | Sbjct 305584 GATCAATAATCTTGTTCAAGTTGCGGGTCACGACCTTGGTGACCTGGTGAAGCATCTTGA 305525 Query 62857 AATCAAATCGCCCATCTATT-ACAAACATGTTCAAGGCAACAGATGCCAGATTACAAACG 62915 | ||| | | || |||| | ||| | || |||| | |||| ||||| || Sbjct 305524 AGTCATACGTCTGAT-TATTGATAAAAGTCGGCAGCGCAATACTGGCCAAGTTACAGACC 305466 Query 62916 GCTACCTCATTAGCATCCGCA-TATTGTATTATCTCAGTGCAAAGATTACTACACTTGAT 62974 ||||| || | | | | || |||| | ||||| || || | |||||| |||||||| Sbjct 305465 GCTACTTCGTCTGGA-CTGCTGTATTCAACAATCTCTGTACACAAATTACTGCACTTGAT 305407 Query 62975 AGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGG 63034 ||||| | || |||||||| || ||| || |||||||| ||||| ||| | || Sbjct 305406 CGTTCCAAGGTTCTGTTGATTCGATTTACGGTTGCAAGCATCCTTGTAAAGCATGTAAGG 305347 Query 63035 AGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTC-GAGCCTTTATTA 63093 ||||| || || |||| | || | ||| || | ||||| | || | ||||| || Sbjct 305346 CGTACCGGTCTCGGTCTGGGCCTCCAGAATAGCATACCAGA-GTTTCTGGGCCTTGATGG 305288 Query 63094 TAGATTTGTATCTCCTTTCTCTTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCC 63153 | | | | || | || ||| | ||| | | ||||| || || |||| Sbjct 305287 TCTTGCGGGCACGACCCTCACGCTCATATCGATGATAGAGTTCCTCGAATTCTTCGCCCC 305228 Query 63154 AAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCT 63213 | |||| | | |||||| || | ||||| | || ||| || ||| |||| Sbjct 305227 ACACATCTTGAAGTCCAGGTGCCTCCGCAGGACAGAACAGACTCCAGTCAGCGTTTTCCT 305168 Query 63214 TCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTA 63272 | ||| |||| || |||||||| ||||| ||||| ||| || | ||| | | | Sbjct 305167 CGATACGTCTCATGAACAGATCAGGGATCCAGAGAGC-ATAGAACAAATCACGAGCACGG 305109 Query 63273 TGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCAC 63332 ||||| ||||| || ||||| |||||| ||||| | | | ||| | |||||| Sbjct 305108 GTCTCCTCCTTTCCAGTGTTCTTGCGAAGATCCAGGAATTCAAAGACATCGGCATGCCAG 305049 Query 63333 GGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTA 63392 ||||| | || ||||| | | ||||| || ||||| || |||||||| | || | | Sbjct 305048 GGTTCGAGATACATGGCAAAGGCACCAGGACGCTTGTTGCCGCCCTGATCAACATAACGA 304989 Query 63393 GCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGATATA-CCATTGGTACC 63451 || || || || || || | | ||| ||||| | || || || ||| || || || || Sbjct 304988 GCCGTATTGTTGTAGACACGAAGCATAGGAATCAACCCATTGGA-ATATCCGTTCGTTCC 304930 Query 63452 GGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCAT 63511 | || || || |||||||| || ||| ||||| || || || || | Sbjct 304929 AGCAATGTATGAACCCGACGCACGAATGTTGTGAATATTAAGACCAATGCCTCCAGCGGT 304870 Query 63512 TTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATACCCTCTATGCTATCATCGAT 63571 ||| ||||| | || || || | || |||||||||||||| || |||||| | Sbjct 304869 TTTCGAGATCATGGCACAGGTCTTGAGGGTATCATAGATACCCTCGATCGAATCATCCTT 304810 Query 63572 CAT-GTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGG 63630 ||| || || ||||| || | ||||| || | ||| ||||| ||||| || | | Sbjct 304809 CATCGTCAACAAGAAACAAGAT-GACATCTGAGGGCGAGGTGTTCCAGCATTGAAGAGCG 304751 Query 63631 TAGGAGAAGCGTGCGTAAACCATTTTTCAGAAA-GTAGATTGTACGTCTCAATAGCTGAG 63689 | || ||||| || || || |||||||||| | ||| |||||| ||||||||||| | Sbjct 304750 TGGGCGAAGCATGGGTGAAGTATTTTTCAGACATGTA-ATTGTAGGTCTCAATAGCCTTG 304692 Query 63690 TCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCA 63749 || | || | ||| || || || | ||||||||| ||||| ||||||||||| || Sbjct 304691 TCCACATTATCTCCATGGATCCCGACCGAGACACGCATCAACATATGCTGAGGTCTCTCC 304632 Query 63750 ACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAG 63809 | | |||| || || | | ||| || || | ||||| || ||||| || Sbjct 304631 GCAACCTTGCCATTGATCCGGAGAAGGTAAGAGCGCTCAAGGGTTTTGAATCCAAAGTAA 304572 Query 63810 TTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTTATATTTGTTA 63869 ||||| ||||| || ||||| || || |||||||||| || || || || Sbjct 304571 TTGTAATTGAAGTCACGATCGTAGATGATTGCCGAGTTGAGGCGTTCTGCATTCTTCATA 304512 Query 63870 ACTATATCCATGGTGATACTTGAAATAATCGGAGAATGTTTCCCATTTTTAGGATTAACA 63929 || | | ||| | || || || | | || || ||| | || || |||| | Sbjct 304511 ACATTGTTATAGGTTGTCTCGGAGATCATGGAGGCATTCTTGCCAGTCTTGGGGTTAATA 304452 Query 63930 TAGTTGAATAAATCCTCCATCACTTCACTAAATAGtttttttGTTTCCTTGTGTAGATTT 63989 || ||| | | ||| || | ||| | | || | || || || || || || ||||| Sbjct 304451 TACTTGTAGAGATCTTCGACCACCTGAGAGAAAACCTTCTTGGTCTCTTTATGAAGATTG 304392 Query 63990 GATACGGCTATTCTGGCGGCTAGAATGGCATAATCCGGATGTTGTGTAGT 64039 || || || || | || || || ||||||||||| ||||| | ||| || Sbjct 304391 GAAACAGCGATACGAGCAGCAAGGATGGCATAATCGGGATGCTTTGTGGT 304342 >seq49 Length=746914 Score = 233 bits (258), Expect = 2e-56 Identities = 639/964 (66%), Gaps = 16/964 (2%) Strand=Plus/Minus Query 62901 GCCAGATTACAAACGGCTACCTCATTAGCATCCGCA-TATTGTATTATCTCAGTGCAAAG 62959 |||| ||||| || || ||||||| || | || |||| || ||||| || || || Sbjct 373894 GCCAAGTTACAGACAGCGACCTCATCAGGG-CTGCTGTATTCGATGATCTCTGTACAGAG 373836 Query 62960 ATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTT 63019 |||||||||||||||||| || || || |||||||| ||| |||||| ||||| || Sbjct 373835 ATTACTACACTTGATAGTCCCCAAGTTCTGTTGATTCGACTTGCGGTTACAGGCATCTTT 373776 Query 63020 ATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGAC 63079 |||||| || | || || ||||| || | |||| || | || || ||| | | Sbjct 373775 ATAAAGCATATAGGGCGTTCCAGTCTCTGTTTGAGCCTCCAGGATTGCGAACCACA-GCT 373717 Query 63080 TC-GAGCCTTTATTATAGATTTGTATCTCCT--TTCTCTTTCGTATAGTGTATACAATCG 63136 || ||||||| || | || | | | | ||| ||||| |||| | | Sbjct 373716 TCTGAGCCTTGATAGTC--TTACGAGCCCGTCCTTCCAGCTCGTAGGTCATATAGAGTTT 373659 Query 63137 TTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGA 63196 || ||||| || ||||| |||| | | ||||| ||| | ||||| | | Sbjct 373658 CTCAAACTCTTCGCCCCAGACATCTTGTAGACCAGGCGCCTCAGCAGGACAAAAGAGACT 373599 Query 63197 CCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAA 63256 ||| || || | | | | ||||||||| || || ||||| ||||| || | | || Sbjct 373598 CCAATCGCCATTCTGTTCAATTCGTTTCATGAACAGGTCAGGGATCCAGAGTCCCAGGAA 373539 Query 63257 TAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCAT 63316 | |||| | | | || || || ||||||||||| ||| || | || | | Sbjct 373538 CAAGTCTCGAGCACGAGTCTCTTCCTTGCCTGTATTCTTGCGAAGGTCCAAAAAATCAAA 373479 Query 63317 AATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCC 63376 | || | |||||| |||||||| || ||||| | |||| ||||| |||||||| || Sbjct 373478 CACGTCCGCATGCCAAGGTTCCAAATACATGGCAAAGGCTCCTGGCCGCTTGTTTCCACC 373419 Query 63377 CTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGA 63436 ||||||| ||||| ||||| || ||| | || |||||||| || || | ||||| || Sbjct 373418 TTGATCTACATATCTCGCGGTATTGTTAAATACCCTCAACATAGGGATCAATCCGTTAGA 373359 Query 63437 TATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGACC 63496 |||||| ||||| | ||||| || ||| || || ||| | || || Sbjct 373358 ATGACCATTCGTACCAGCAATATATGAACCTGAGGCTCGGATGTTATGGACATTAAGGCC 373299 Query 63497 TATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATACCCTC 63556 || || || || | || ||||| | || || || | || || || || || || Sbjct 373298 AATCCCACCAGCAGTCTTGGAGATCATGGCACAAGACTTGAGGGTATCGTAAATTCCTTC 373239 Query 63557 TATGCTATCATCGATCAT-GTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTC 63615 || ||||| |||| || ||| || ||||| || |||||||| | | || | Sbjct 373238 GATCGAGTCATCCTTCATAGTCAAG-AGGAAACAACTTGACATTTGAGGCCTTGGGGTCC 373180 Query 63616 CCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGA-AAGTAGATTGTAC 63674 | |||||||| | | | ||||| || |||||||| |||||||||| | |||| || || Sbjct 373179 CAGCATTAAACAGGATCGGAGATGCATGCGTAAAATATTTTTCAGACATGTAG-TTATAA 373121 Query 63675 GTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATG 63734 || ||||| || ||| |||||| ||| || || || || |||||||| | ||| Sbjct 373120 GTTTCAATGGCCTTGTCGATATCCTCACCATGGATCCCAACAGCAACACGCATGAGCATT 373061 Query 63735 TGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTT 63794 || ||||| || || || |||||| | || || | | ||| ||| ||||| || Sbjct 373060 TGTTGAGGCCTCTCTACTATCTTGCCATCGATCTTGAGGAGGTATGATCGTTCCAGGGTC 373001 Query 63795 TTAAAACCAAAATAGTTGTA--TGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTT 63852 ||||| || || ||||| | ||||| || || ||||| | || | |||||||| | Sbjct 373000 TTAAAGCCGAAGTAGTTAAAGTTGAAA--TCGCGATCGTAGACGATGGCTGAGTTGAGCT 372943 Query 63853 TATC 63856 ||| Sbjct 372942 GATC 372939 >seq57 Length=574579 Score = 134 bits (148), Expect = 2e-26 Identities = 121/152 (80%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 33295 AACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAA 33354 |||| || || |||||||| ||| |||||||| || | || ||||||||||| Sbjct 521087 AACAATAAGCAGGCGAAATCAGTGTGGAGACCCTCATCACGCGAGATGAGTTCGTTGGAG 521028 Query 33355 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCA 33414 || || || || ||||| || ||||||||||| |||||||| ||||||||||||| ||| Sbjct 521027 AAGGTCAGACCAGGCATGAGACCACGCTTTTTGAGCCAAAAGATGGAAGCGAATGCGCCA 520968 Query 33415 GAAAAGAAGATTCCTTCTACTGCAGCAAAGGC 33446 || |||||||| ||||| || ||||||||||| Sbjct 520967 GAGAAGAAGATGCCTTCAACAGCAGCAAAGGC 520936 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622946125416080