Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lobosporangium_20transversale_20[genbank_20GCA_5F002105155.1_202017- 04-20] 138 sequences; 42,768,949 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq53 98.7 1e-15 seq57 95.1 1e-14 >seq53 Length=681236 Score = 98.7 bits (108), Expect = 1e-15 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | || || || || ||||| || ||| | ||||| | ||| | || || | Sbjct 252582 ATGCAGATTTTCGTCAAGACTTTAACCGGTAAAACTATCACTTTGGAAGTTGAGTCCTCC 252523 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||||||||| | ||||| || |||||| ||||| ||||| || || || || || Sbjct 252522 GACACCATCGATAACGTCAAGCAGAAGATTCAGGACAAGGAAGGTATTCCCCCAGACCAG 252463 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || | ||||| | || ||| ||||| || ||||||| | | | || ||||| || Sbjct 252462 CAGCGCCTCATCTTCGCCGGAAAACAGCTTGAAGATGGTCGTACGCTCTCTGACTACAAT 252403 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 || ||||| || ||||| | || ||||||| Sbjct 252402 ATCCAAAAGGAGTCTACCCTTCACTTGGTCCT 252371 Score = 98.7 bits (108), Expect = 1e-15 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | || || || || ||||| || ||| | ||||| | ||| | || || | Sbjct 253038 ATGCAGATTTTCGTCAAGACTTTAACCGGTAAAACTATCACTTTGGAAGTTGAGTCCTCC 252979 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||||||||| | ||||| || |||||| ||||| ||||| || || || || || Sbjct 252978 GACACCATCGATAACGTCAAGCAGAAGATTCAGGACAAGGAAGGTATTCCCCCAGACCAG 252919 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || | ||||| | || ||| ||||| || ||||||| | | | || ||||| || Sbjct 252918 CAGCGCCTCATCTTCGCCGGAAAACAGCTTGAAGATGGTCGTACGCTCTCTGACTACAAT 252859 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 || ||||| || ||||| | || ||||||| Sbjct 252858 ATCCAAAAGGAGTCTACCCTTCACTTGGTCCT 252827 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | || || || ||| | ||||| || | ||||| | ||| | || || | Sbjct 252354 ATGCAGATTTTCGTCAAGACACTCACTGGCAAGACAATCACTTTGGAAGTTGAGTCTTCC 252295 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||||||||| | ||||| || |||||| ||||| ||||| || ||||| || || Sbjct 252294 GACACCATCGACAACGTCAAGCAGAAGATTCAGGACAAGGAAGGTATTCCTCCAGACCAG 252235 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || | || |||| || ||| ||||| || || |||| | | | || ||||| || Sbjct 252234 CAGCGTCTTATTTTCGCCGGAAAACAGCTTGAGGATGGTCGCACGCTCTCTGACTACAAT 252175 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 || ||||| || ||||| | || ||||||| Sbjct 252174 ATCCAAAAGGAGTCTACCCTTCACTTGGTCCT 252143 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | || || || ||| | ||||| || | ||||| | ||| | || || | Sbjct 252810 ATGCAGATTTTCGTCAAGACACTCACTGGCAAGACAATCACTTTGGAAGTTGAGTCTTCC 252751 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||||||||| | ||||| || |||||| ||||| ||||| || ||||| || || Sbjct 252750 GACACCATCGACAACGTCAAGCAGAAGATTCAGGACAAGGAAGGTATTCCTCCAGACCAG 252691 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || | || |||| || ||| ||||| || || |||| | | || |||||||| Sbjct 252690 CAGCGTCTTATTTTCGCCGGAAAACAGCTTGAGGATGGCCGCACGCTCTCTGACTATAAT 252631 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 ||||| || ||||| || |||| || || || Sbjct 252630 ATTCAGAAGGAATCCACCCTCCACCTAGTTCT 252599 >seq57 Length=574579 Score = 95.1 bits (104), Expect = 1e-14 Identities = 153/219 (70%), Gaps = 6/219 (3%) Strand=Plus/Minus Query 119655 ACACGTTTTTCaaaaaaaTTAGTCTTGCCCTCAAGAGATATGTTATTCATAAACTCGAAA 119714 ||||| || ||||| || || |||||||||| |||||| || | |||||| || ||| Sbjct 521354 ACACGCTTCTCAAAGAAGTTGGTCTTGCCCTGAAGAGAGATCAAGTCCATAAAGTCAAAA 521295 Query 119715 GGATTTGCAGTGTTGAAATGCTTGTCGTAGCCCAACTCGAACAACAGTCGATCTGCCACA 119774 ||||| || ||| |||| || || || | | ||| ||| || ||||| |||||| Sbjct 521294 GGATTCTCAACATTGTAATGTTTTGGGTTTCCGAGCGCGACCAAGAGACGATCGGCCACA 521235 Query 119775 AACTCGATGTATTCGCACATGGATTGCGAATTCATGCC---CAACATAGCGACCGGTAAA 119831 ||||| ||||||| ||| | | | |||||| || |||||| || || | | Sbjct 521234 AACTCAATGTATTGTTTCATCAACTTGGCATTCATACCAATCAACAT---CACAGGGAGA 521178 Query 119832 GCATTGGTAAAGAAATCCTTTTCAATGTCGACCGCTTCT 119870 |||| ||| ||||| || | ||| || | || || ||| Sbjct 521177 GCATCGGTCAAGAACTCTTGTTCGATCACAACAGCCTCT 521139 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478661574307360