Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lobosporangium_20transversale_20[genbank_20GCA_5F002105155.1_202017- 04-20] 138 sequences; 42,768,949 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq29 140 2e-28 seq53 116 2e-21 seq84 93.3 3e-14 >seq29 Length=11094 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 559 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 618 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 619 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 653 Score = 113 bits (124), Expect = 3e-20 Identities = 73/80 (91%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 19944 TTTCTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCT 20003 || |||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 2686 TTACTCTCTTTTCAAAGTTCTTTTCATCTTTCCCTCACGGTACTTGTTCGCTATCGGTCT 2745 Query 20004 CGCGGTAATATTTAGCCTTA 20023 | || |||||||||| ||| Sbjct 2746 CTCGCCAATATTTAGCTTTA 2765 >seq53 Length=681236 Score = 116 bits (128), Expect = 2e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 38109 ACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCT 38168 ||||| ||||| || ||||||||| |||||||| ||||| | ||| | || || Sbjct 252374 ACCAAGTGAAGGGTAGACTCCTTTTGGATATTGTAGTCAGAGAGCGTACGACCATCTTCA 252433 Query 38169 AATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATA 38228 | ||||||||||| || || ||||| || || || | ||| | ||||| |||||| | Sbjct 252434 AGCTGTTTTCCGGCGAAGATGAGGCGCTGCTGGTCTGGGGGAATACCTTCCTTGTCCTGA 252493 Query 38229 ATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTA 38288 || || ||||| || || | || || || |||||||| || || ||||||||| Sbjct 252494 ATCTTCTGCTTGACGTTATCGATGGTGTCGGAGGACTCAACTTCCAAAGTGATAGTTTTA 252553 Query 38289 CCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || || || || || ||||| |||||||| Sbjct 252554 CCGGTTAAAGTCTTGACGAAAATCTGCAT 252582 Score = 116 bits (128), Expect = 2e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 38109 ACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCT 38168 ||||| ||||| || ||||||||| |||||||| ||||| | ||| | || || Sbjct 252830 ACCAAGTGAAGGGTAGACTCCTTTTGGATATTGTAGTCAGAGAGCGTACGACCATCTTCA 252889 Query 38169 AATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATA 38228 | ||||||||||| || || ||||| || || || | ||| | ||||| |||||| | Sbjct 252890 AGCTGTTTTCCGGCGAAGATGAGGCGCTGCTGGTCTGGGGGAATACCTTCCTTGTCCTGA 252949 Query 38229 ATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTA 38288 || || ||||| || || | || || || |||||||| || || ||||||||| Sbjct 252950 ATCTTCTGCTTGACGTTATCGATGGTGTCGGAGGACTCAACTTCCAAAGTGATAGTTTTA 253009 Query 38289 CCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || || || || || ||||| |||||||| Sbjct 253010 CCGGTTAAAGTCTTGACGAAAATCTGCAT 253038 Score = 89.7 bits (98), Expect = 3e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 ||||| | | ||| | ||||| ||||| || ||||||||| |||||||| ||||| Sbjct 252128 CCACCACGAAGACGAAGGACCAAGTGAAGGGTAGACTCCTTTTGGATATTGTAGTCAGAG 252187 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | || | || || | ||||||||||| || || || || || || || | || Sbjct 252188 AGCGTGCGACCATCCTCAAGCTGTTTTCCGGCGAAAATAAGACGCTGCTGGTCTGGAGGA 252247 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | ||||| |||||| ||| || ||||| || || | || || || | |||||| Sbjct 252248 ATACCTTCCTTGTCCTGAATCTTCTGCTTGACGTTGTCGATGGTGTCGGAAGACTCAACT 252307 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || || || || || || || || | || || ||||| |||||||| Sbjct 252308 TCCAAAGTGATTGTCTTGCCAGTGAGTGTCTTGACGAAAATCTGCAT 252354 Score = 89.7 bits (98), Expect = 3e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 38109 ACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCT 38168 ||||| ||||| || ||||||||||||||| ||||| || | |||| | || || Sbjct 253058 ACCAAGTGAAGGGTCGACTCCTTTTGAATATTATAATCGGAAAGCGTACGTCCATCTTCA 253117 Query 38169 AATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATA 38228 | ||| ||||| ||||| || || || || || || | || | ||||| |||||| Sbjct 253118 AGTTGCTTTCCAGCAAAGATGAGACGCTGCTGGTCTGGAGGAATACCTTCCTTGTCCTGG 253177 Query 38229 ATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTA 38288 ||||| || || ||||| | || ||| || || || || || ||||| || || Sbjct 253178 ATTTTCTGTTTAACATTGTCGATAGTGTCGGAGGACTCTACCTCCAAAGTAATGGTCTTG 253237 Query 38289 CCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 || || | || || || || |||||||| || Sbjct 253238 CCGGTGAGTGTCTTGACAAAAATCTGCATTTT 253269 >seq84 Length=1068272 Score = 93.3 bits (102), Expect = 3e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| | | |||||| |||||||||||||| |||||| || || || || |||| Sbjct 721128 TACCACCACGGAGACGCAAGACCAAATGAAGAGTAGACTCCTTCTGGATGTTATAGTCAG 721069 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 | | ||| | || || | || || |||||||| || || || || || || | || Sbjct 721068 AAAGGGTACGGCCATCCTCAAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCTGGGG 721009 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 | | || |||||||| || || ||||| ||||| | | ||||| || | Sbjct 721008 GAATACCCTCTTTGTCTTGGATCTTCTGCTTGACATTGTCAATGGTATCAGAGGACTCGA 720949 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 | || | || || || || || |||||||| || ||||| |||||||| Sbjct 720948 CCTCGAGGGTGATGGTCTTGCCGGTCAAGGTCTTGACGAAAATCTGCAT 720900 Score = 86.0 bits (94), Expect = 4e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 38103 CGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCG 38162 ||||| ||||||||||| ||| |||||| ||||| || || ||||| | ||| | Sbjct 721570 CGCAATACCAAATGAAGGGTGGACTCCTTCTGAATGTTATAGTCAGAAAGGGTACGGCCA 721511 Query 38163 TCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTG 38222 || || | || || || ||||| || ||||| || || || | ||| | || || || Sbjct 721510 TCCTCAAGCTGCTTGCCAGCAAAAATGAGGCGCTGCTGGTCTGGGGGAATACCCTCCTTA 721451 Query 38223 TCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATA 38282 || || || ||||| ||||| | | ||||| ||| || || | || || Sbjct 721450 TCTTGGATCTTCTGCTTGACATTGTCAATGGTATCAGAGGATTCGACCTCAAGGGTGATG 721391 Query 38283 GTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || || || |||||||| || ||||| |||||||| Sbjct 721390 GTCTTGCCGGTCAAGGTCTTGACGAAAATCTGCAT 721356 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334946636660678