Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lobosporangium_20transversale_20[genbank_20GCA_5F002105155.1_202017- 04-20] 138 sequences; 42,768,949 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq47 242 5e-59 seq49 230 3e-55 seq1 120 4e-22 seq57 113 6e-20 >seq47 Length=818200 Score = 242 bits (268), Expect = 5e-59 Identities = 719/1098 (65%), Gaps = 8/1098 (1%) Strand=Plus/Minus Query 62801 ATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTG 62860 ||||| || || | |||||| |||||||| ||||| | || |||||||| || | Sbjct 305435 ATCTCTGTACACAAATTACTGCACTTGATCGTTCCAAGGTTCTGTTGATTCGATTTACGG 305376 Query 62861 TTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATC 62920 || || |||||||| ||||| ||| | || ||||| || || |||| | || | ||| Sbjct 305375 TTGCAAGCATCCTTGTAAAGCATGTAAGGCGTACCGGTCTCGGTCTGGGCCTCCAGAATA 305316 Query 62921 GCTTTCCAGACGACTC-GAGCCTTTATTATAGATTTGTATCTCTTTTCTCTTTCGTATAG 62979 || | ||||| | || | ||||| || | | | || | || ||| | Sbjct 305315 GCATACCAGA-GTTTCTGGGCCTTGATGGTCTTGCGGGCACGACCCTCACGCTCATATCG 305257 Query 62980 TGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAGTCCAGGACATTCATCCGG 63039 ||| | | ||||| || || ||||| |||| | |||||||| || | || Sbjct 305256 ATGATAGAGTTCCTCGAATTCTTCGCCCCACACATCTTGAAGTCCAGGTGCCTCCGCAGG 305197 Query 63040 ACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCA 63099 ||| | || ||| || ||| |||| | ||| |||| || |||||||| ||||| Sbjct 305196 ACAGAACAGACTCCAGTCAGCGTTTTCCTCGATACGTCTCATGAACAGATCAGGGATCCA 305137 Query 63100 AAGAGCTATA-AATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGAT 63158 ||||| ||| || | ||| | | | ||||| ||||| || ||||| ||||| Sbjct 305136 GAGAGC-ATAGAACAAATCACGAGCACGGGTCTCCTCCTTTCCAGTGTTCTTGCGAAGAT 305078 Query 63159 CGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCC 63218 | ||||| | | | ||| | |||||| ||||| | || ||||| | | ||||| | Sbjct 305077 CCAGGAATTCAAAGACATCGGCATGCCAGGGTTCGAGATACATGGCAAAGGCACCAGGAC 305018 Query 63219 GTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAA 63278 | ||||| || |||||||| | || | ||| || || || || || | | ||| |||| Sbjct 305017 GCTTGTTGCCGCCCTGATCAACATAACGAGCCGTATTGTTGTAGACACGAAGCATAGGAA 304958 Query 63279 TAATACCATTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTAC 63338 | | |||||||| || || || || | || || || |||||||| || Sbjct 304957 TCAACCCATTGGAATATCCGTTCGTTCCAGCAATGTATGAACCCGACGCACGAATGTTGT 304898 Query 63339 TAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTAT 63398 ||| ||||| || || || || |||| ||||| | || || || | |||| Sbjct 304897 GAATATTAAGACCAATGCCTCCAGCGGTTTTCGAGATCATGGCACAGGTCTTGAGGGTAT 304838 Query 63399 CATAGATGCCCTCTATACTATCATCCATCAT-GTTAAGTAGAAAACAGCTAGACATTTGG 63457 ||||||| ||||| || ||||||| |||| || || ||||| || | ||||| || Sbjct 304837 CATAGATACCCTCGATCGAATCATCCTTCATCGTCAACAAGAAACAAGAT-GACATCTGA 304779 Query 63458 TGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAA 63517 | ||| ||||| ||||| || | || || ||||| || || || |||||||||| Sbjct 304778 GGGCGAGGTGTTCCAGCATTGAAGAGCGTGGGCGAAGCATGGGTGAAGTATTTTTCAGAC 304719 Query 63518 A-GTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGAC 63576 | ||| |||||| ||||||||||| ||| | || | ||| || || || | ||| Sbjct 304718 ATGTA-ATTGTAGGTCTCAATAGCCTTGTCCACATTATCTCCATGGATCCCGACCGAGAC 304660 Query 63577 ACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGA 63636 |||||| ||||| ||||||||||| || | | |||| || || | | ||| || Sbjct 304659 ACGCATCAACATATGCTGAGGTCTCTCCGCAACCTTGCCATTGATCCGGAGAAGGTAAGA 304600 Query 63637 TTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAAC 63696 || | ||||| || ||||| || ||||| ||||| || ||||| || || | Sbjct 304599 GCGCTCAAGGGTTTTGAATCCAAAGTAATTGTAATTGAAGTCACGATCGTAGATGATTGC 304540 Query 63697 CGAGTTGAGTTTATCCTTATATTTGTTAACTACATCCATGGTAATACTTGAAATAATAGG 63756 ||||||||| || || || |||| | ||| | || || || | Sbjct 304539 CGAGTTGAGGCGTTCTGCATTCTTCATAACATTGTTATAGGTTGTCTCGGAGATCATGGA 304480 Query 63757 AAAATGTTTCCCATTTTTAGGATTGACATAGTTGAATAAATCCTCCATCACTTCACTAAA 63816 || || ||| | || || || | ||| ||| | | ||| || | ||| | | || Sbjct 304479 GGCATTCTTGCCAGTCTTGGGGTTAATATACTTGTAGAGATCTTCGACCACCTGAGAGAA 304420 Query 63817 TAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAATGGCATA 63876 | || || || ||||| || ||||| || || || || | ||| || || |||||||| Sbjct 304419 AACCTTCTTGGTCTCTTTATGAAGATTGGAAACAGCGATACGAGCAGCAAGGATGGCATA 304360 Query 63877 ATCCGGATGTTGTGTAGT 63894 ||| ||||| | ||| || Sbjct 304359 ATCGGGATGCTTTGTGGT 304342 Score = 122 bits (134), Expect = 1e-22 Identities = 286/431 (66%), Gaps = 3/431 (1%) Strand=Plus/Minus Query 61880 GTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTC 61939 || || ||||| ||||| ||||| || | || | ||||||| ||||| ||| | Sbjct 306359 GTTCGAAGATAATACATCCCCGTCTTCAACCCCCGCTTCCATCCATAAAACGCCATCGAC 306300 Query 61940 GTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATG 61999 || | || |||| || ||| || |||||||||||||| |||||| |||||| || Sbjct 306299 GTCAACTTTCCATAATTCACATCCGCCATATGGATATTCATCGATTGAGATTGATCAATA 306240 Query 62000 AAGGCTCCCCTGTCTGCAGCCATTTTTATAATCGTCTTTTGTGGAATTTCCCAAATAGTT 62059 || || |||| ||| || ||||| | || | | |||||||| ||| ||||| | || Sbjct 306239 AATGCCCCCCGGTCCGCTGCCATATCAATTACCACCTTTTGTGAAATCTCCCACGTGGTC 306180 Query 62060 TTATAAACTCGCTTAATATCTTCTGGAAGGTTTG---TATTCTGAATGGATCCACCATCT 62116 || || | ||| | ||| || |||| | | | ||||||| ||||| ||| Sbjct 306179 TTGTACAGCGCCTTCAAATCATCCGGAATACTCGGGATCCTCTGAATCGATCCGTTCTCT 306120 Query 62117 GCCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGG 62176 || || |||| ||||| | | ||| ||||| | | |||| || | | | Sbjct 306119 GCAATGATCCGGTTCTTCAGTTGATCGTTCCACAGTCCCATCTCCACCAAGTCCTTCAAC 306060 Query 62177 AGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTG 62236 | |||||| || | || || ||||| | | |||| || ||||| |||||| | Sbjct 306059 ATCCACGGATTCACAATCTGGAACTCTCCCGCAAGCACTCGACGTGTGTAGATATTAGAG 306000 Query 62237 GTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATA 62296 ||||| || || | | | ||||| |||| || || | || || || || ||||| Sbjct 305999 GTATAGGGCTCGAAACATTCATTGAAACCCAGGATCTGTGAGGTCGAAGCCGTAGGCATC 305940 Query 62297 GGTGCCACCAA 62307 ||||||||||| Sbjct 305939 GGTGCCACCAA 305929 >seq49 Length=746914 Score = 230 bits (254), Expect = 3e-55 Identities = 638/964 (66%), Gaps = 16/964 (2%) Strand=Plus/Minus Query 62756 GCCAGATTACAAACGGCTACCTCATTAGCATCCGCA-TATTGTATTATCTCAGTGCAAAG 62814 |||| ||||| || || ||||||| || | || |||| || ||||| || || || Sbjct 373894 GCCAAGTTACAGACAGCGACCTCATCAGGG-CTGCTGTATTCGATGATCTCTGTACAGAG 373836 Query 62815 ATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTT 62874 ||||||||||||||| || || || || |||||||| ||| |||||| ||||| || Sbjct 373835 ATTACTACACTTGATAGTCCCCAAGTTCTGTTGATTCGACTTGCGGTTACAGGCATCTTT 373776 Query 62875 ATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGAC 62934 |||||| || | || || ||||| || | |||| || | || || ||| | | Sbjct 373775 ATAAAGCATATAGGGCGTTCCAGTCTCTGTTTGAGCCTCCAGGATTGCGAACCACA-GCT 373717 Query 62935 TC-GAGCCTTTATTATAGATTTGTATCTCTT--TTCTCTTTCGTATAGTGTATACAATCG 62991 || ||||||| || | || | | | | ||| ||||| |||| | | Sbjct 373716 TCTGAGCCTTGATAGTC--TTACGAGCCCGTCCTTCCAGCTCGTAGGTCATATAGAGTTT 373659 Query 62992 TTCGAACTCGTCTCCCCAAACATTGTCCAGTCCAGGACATTCATCCGGACACATCAACGA 63051 || ||||| || ||||| |||| | || ||||| ||| | ||||| | | Sbjct 373658 CTCAAACTCTTCGCCCCAGACATCTTGTAGACCAGGCGCCTCAGCAGGACAAAAGAGACT 373599 Query 63052 CCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAA 63111 ||| || || | | | | ||||||||| || || ||||| ||||| || | | || Sbjct 373598 CCAATCGCCATTCTGTTCAATTCGTTTCATGAACAGGTCAGGGATCCAGAGTCCCAGGAA 373539 Query 63112 TAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCAT 63171 | |||| | | | || || || ||||||||||| ||| || | || | | Sbjct 373538 CAAGTCTCGAGCACGAGTCTCTTCCTTGCCTGTATTCTTGCGAAGGTCCAAAAAATCAAA 373479 Query 63172 AATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCC 63231 | || | |||||| |||||||| || ||||| | |||| ||||| |||||||| || Sbjct 373478 CACGTCCGCATGCCAAGGTTCCAAATACATGGCAAAGGCTCCTGGCCGCTTGTTTCCACC 373419 Query 63232 CTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGA 63291 ||||||| ||||| ||||| || ||| | || |||||||| || || | || || || Sbjct 373418 TTGATCTACATATCTCGCGGTATTGTTAAATACCCTCAACATAGGGATCAATCCGTTAGA 373359 Query 63292 TGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGACC 63351 |||||| || || | ||||| || ||| || || ||| | || || Sbjct 373358 ATGACCATTCGTACCAGCAATATATGAACCTGAGGCTCGGATGTTATGGACATTAAGGCC 373299 Query 63352 TATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTC 63411 || || || || | || ||||| | || || || | ||||| || || || || Sbjct 373298 AATCCCACCAGCAGTCTTGGAGATCATGGCACAAGACTTGAGGGTATCGTAAATTCCTTC 373239 Query 63412 TATACTATCATCCATCAT-GTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTC 63470 || |||||| |||| || ||| || ||||| || |||||||| | | || | Sbjct 373238 GATCGAGTCATCCTTCATAGTCAAG-AGGAAACAACTTGACATTTGAGGCCTTGGGGTCC 373180 Query 63471 CCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGA-AAGTAGATTGTAC 63529 | |||||||| | | | ||||| || || ||||| |||||||||| | |||| || || Sbjct 373179 CAGCATTAAACAGGATCGGAGATGCATGCGTAAAATATTTTTCAGACATGTAG-TTATAA 373121 Query 63530 GTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATG 63589 || ||||| || ||| |||||| ||| || || || || |||||||| | ||| Sbjct 373120 GTTTCAATGGCCTTGTCGATATCCTCACCATGGATCCCAACAGCAACACGCATGAGCATT 373061 Query 63590 TGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTT 63649 || ||||| || || || |||||| | || || | | ||| ||| ||||| || Sbjct 373060 TGTTGAGGCCTCTCTACTATCTTGCCATCGATCTTGAGGAGGTATGATCGTTCCAGGGTC 373001 Query 63650 TTAAAACCAAAATAGTTGTA--TGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTT 63707 ||||| || || ||||| | ||||| || || ||||| | || | |||||||| | Sbjct 373000 TTAAAGCCGAAGTAGTTAAAGTTGAAA--TCGCGATCGTAGACGATGGCTGAGTTGAGCT 372943 Query 63708 TATC 63711 ||| Sbjct 372942 GATC 372939 >seq1 Length=1854208 Score = 120 bits (132), Expect = 4e-22 Identities = 177/251 (71%), Gaps = 0/251 (0%) Strand=Plus/Minus Query 63356 CCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATA 63415 || ||||| ||| || || | | |||| || || || || ||||||||||| ||| Sbjct 981946 CCGCCTGCAGCTTTGGAAATCAGAGAGCATGTCTTCAAGGTGTCGTAGATGCCCTCAATA 981887 Query 63416 CTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCA 63475 ||||| || ||| | || || || ||||| ||||| || ||||| ||||| ||| Sbjct 981886 CTATCGTCTGCCATTTGAACTAAGAAGCAGCTTGACATCTGAGGACGAGGTGTTCCAGCA 981827 Query 63476 TTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCA 63535 ||||| || ||||||| || || ||||| ||||||| || | | || || |||||| Sbjct 981826 TTAAACAACGTAGGAGTCGCATGTGTAAAATATTTTTCGGACATGAAGTTATATGTCTCA 981767 Query 63536 ATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGA 63595 || || | || ||||| | ||| || || | ||| |||||||| | |||||| || Sbjct 981766 ATTGCAGCATCAATATCACGGCCATGGATACCAATTGCAACACGCATAATCATGTGTTGT 981707 Query 63596 GGTCTTTCAAC 63606 || | ||||| Sbjct 981706 GGACGCTCAAC 981696 >seq57 Length=574579 Score = 113 bits (124), Expect = 6e-20 Identities = 116/152 (76%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 32652 AACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAA 32711 |||| || || |||||||| ||| |||||||| || | || | ||||||||| Sbjct 521087 AACAATAAGCAGGCGAAATCAGTGTGGAGACCCTCATCACGCGAGATGAGTTCGTTGGAG 521028 Query 32712 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCA 32771 || || || || ||||| || ||||||||||| |||||||| ||||| || |||| ||| Sbjct 521027 AAGGTCAGACCAGGCATGAGACCACGCTTTTTGAGCCAAAAGATGGAAGCGAATGCGCCA 520968 Query 32772 GAAAAGAAAATTCCTTCTACTGCCGCAAAGGC 32803 || ||||| || ||||| || || |||||||| Sbjct 520967 GAGAAGAAGATGCCTTCAACAGCAGCAAAGGC 520936 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633630906984800