Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lobosporangium_20transversale_20[genbank_20GCA_5F002105155.1_202017- 04-20] 138 sequences; 42,768,949 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq84 143 2e-29 seq53 140 3e-28 >seq84 Length=1068272 Score = 143 bits (158), Expect = 2e-29 Identities = 176/239 (74%), Gaps = 1/239 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | ||| || ||||| | ||||| || || || ||||| || || Sbjct 720901 ATACCACCACGGAGACGCAAGACCAAATGAAGGGTAGACTCCTTCTGGATGTTATAGTCA 720842 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | |||||| ||| ||||| || ||||| || ||||||||||||| ||||| || Sbjct 720841 GAGAGAGTACGGCCATCCTCAAGCTGCTTACCGGCAAAGATGAGACGCTGCTGGTCTGGG 720782 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| || || ||||| ||||| || || | | |||| |||||||| ||| ||| Sbjct 720781 GGAATACCCTCCTTGTCTTGGATCTTCTGCTTGACGTTGTCAATGGTGTCGGAGGACTCG 720722 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCTTAATT 114391 || || | ||| | || |||||||| ||||| || || || ||||||||| | ||||| Sbjct 720721 ACCTCAAGGGTGATGGTCTTGCCGGTGAGAGTCTTAACGAAGATCTGCATGAC-TAATT 720664 Score = 127 bits (140), Expect = 2e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | ||| || ||||| | ||||| || || || ||||| || || Sbjct 721129 ATACCACCACGGAGACGCAAGACCAAATGAAGAGTAGACTCCTTCTGGATGTTATAGTCA 721070 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | ||||| ||| ||||| || || || || ||||||||||||| ||||| || Sbjct 721069 GAAAGGGTACGGCCATCCTCAAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCTGGG 721010 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| || |||||||| ||||| || || | | |||| ||| || | ||| ||| Sbjct 721009 GGAATACCCTCTTTGTCTTGGATCTTCTGCTTGACATTGTCAATGGTATCAGAGGACTCG 720950 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | ||| | || |||||||||| || || || ||||||||||| Sbjct 720949 ACCTCGAGGGTGATGGTCTTGCCGGTCAAGGTCTTGACGAAAATCTGCAT 720900 Score = 122 bits (134), Expect = 7e-23 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | || || || || | || || || || || |||||||||||| Sbjct 721357 ATACCACCACGGAGGCGCAGCACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAATCG 721298 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | ||||| |||||| | || || || ||| | ||||| ||||| ||||| ||| Sbjct 721297 GAGAGGGTACGGCCATCTTCCAACTGCTTGCCGGCGAAAATGAGGCGCTGCTGGTCTGGA 721238 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||||||||| || || |||||| || || | | || | ||||| | ||| ||| Sbjct 721237 GGAATGCCTTCCTTATCTTGAATCTTCTGCTTGACGTTATCGATCGTGTCAGAGGACTCG 721178 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | ||| | || |||||||||| || || || ||||||||||| Sbjct 721177 ACCTCAAGGGTGATGGTCTTGCCGGTCAAGGTCTTGACGAAAATCTGCAT 721128 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 114156 CCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTC 114215 || || || || | ||| || ||||| | || || || || |||||||| || || Sbjct 721582 CCACCGCGAAGGCGCAATACCAAATGAAGGGTGGACTCCTTCTGAATGTTATAGTCAGAA 721523 Query 114216 ATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGA 114275 | ||||| ||| ||||| || || ||||| | ||||| ||||| ||||| || ||| Sbjct 721522 AGGGTACGGCCATCCTCAAGCTGCTTGCCAGCAAAAATGAGGCGCTGCTGGTCTGGGGGA 721463 Query 114276 ATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACG 114335 || || || || || ||||| || || | | |||| ||| || | ||||||||| Sbjct 721462 ATACCCTCCTTATCTTGGATCTTCTGCTTGACATTGTCAATGGTATCAGAGGATTCGACC 721403 Query 114336 TCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || | ||| | || |||||||||| || || || ||||||||||| Sbjct 721402 TCAAGGGTGATGGTCTTGCCGGTCAAGGTCTTGACGAAAATCTGCAT 721356 >seq53 Length=681236 Score = 140 bits (154), Expect = 3e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | | || || || | || || || |||||||| || |||||| Sbjct 253037 ATACCTCCACGGAGACGGAGGACCAAGTGAAGGGTCGACTCCTTTTGAATATTATAATCG 253096 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | ||||| |||||||||||| || ||||| ||||||||||||| ||||| ||| Sbjct 253097 GAAAGCGTACGTCCATCTTCAAGTTGCTTTCCAGCAAAGATGAGACGCTGCTGGTCTGGA 253156 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| ||||| ||||| || || ||||| | | || | ||||||| ||| || Sbjct 253157 GGAATACCTTCCTTGTCCTGGATTTTCTGTTTAACATTGTCGATAGTGTCGGAGGACTCT 253216 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| || | || |||||||| || || || |||||||||||||| Sbjct 253217 ACCTCCAAAGTAATGGTCTTGCCGGTGAGTGTCTTGACAAAAATCTGCAT 253266 Score = 136 bits (150), Expect = 3e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 |||||||| || || | | || || || | ||||| || ||||| || ||||| || Sbjct 252353 ATACCGCCGCGGAGACGAAGGACCAAGTGAAGGGTAGACTCCTTTTGGATATTGTAGTCA 252412 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | |||||| ||||||||| ||||| || ||| ||||||| ||||| ||||| || Sbjct 252413 GAGAGCGTACGACCATCTTCAAGCTGTTTTCCGGCGAAGATGAGGCGCTGCTGGTCTGGG 252472 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| ||||| ||||| |||||| || || | | || | |||||||| ||| || Sbjct 252473 GGAATACCTTCCTTGTCCTGAATCTTCTGCTTGACGTTATCGATGGTGTCGGAGGACTCA 252532 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| || | ||||| ||||| | ||| || || ||||||||||| Sbjct 252533 ACTTCCAAAGTGATAGTTTTACCGGTTAAAGTCTTGACGAAAATCTGCAT 252582 Score = 136 bits (150), Expect = 3e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 |||||||| || || | | || || || | ||||| || ||||| || ||||| || Sbjct 252809 ATACCGCCGCGGAGACGAAGGACCAAGTGAAGGGTAGACTCCTTTTGGATATTGTAGTCA 252868 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | |||||| ||||||||| ||||| || ||| ||||||| ||||| ||||| || Sbjct 252869 GAGAGCGTACGACCATCTTCAAGCTGTTTTCCGGCGAAGATGAGGCGCTGCTGGTCTGGG 252928 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| ||||| ||||| |||||| || || | | || | |||||||| ||| || Sbjct 252929 GGAATACCTTCCTTGTCCTGAATCTTCTGCTTGACGTTATCGATGGTGTCGGAGGACTCA 252988 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| || | ||||| ||||| | ||| || || ||||||||||| Sbjct 252989 ACTTCCAAAGTGATAGTTTTACCGGTTAAAGTCTTGACGAAAATCTGCAT 253038 Score = 113 bits (124), Expect = 4e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 ||||| || ||||| || ||||| || | || ||| ||| ||||| ||||| || Sbjct 252158 GTAGACTCCTTTTGGATATTGTAGTCAGAGAGCGTGCGACCATCCTCAAGCTGTTTTCCG 252217 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| | || |||||||| ||||| |||||||| ||||| ||||| |||||| || || Sbjct 252218 GCGAAAATAAGACGCTGCTGGTCTGGAGGAATACCTTCCTTGTCCTGAATCTTCTGCTTG 252277 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | || | |||||||| || || || |||| || | || ||||| || || || Sbjct 252278 ACGTTGTCGATGGTGTCGGAAGACTCAACTTCCAAAGTGATTGTCTTGCCAGTGAGTGTC 252337 Query 114366 TTTACAAAAATCTGCAT 114382 || || ||||||||||| Sbjct 252338 TTGACGAAAATCTGCAT 252354 Score = 113 bits (124), Expect = 4e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 |||||||| || || | | ||||| || | || ||||| || ||||| || || || Sbjct 252581 ATACCGCCGCGAAGACGAAGAACTAGGTGGAGGGTGGATTCCTTCTGAATATTATAGTCA 252640 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | || || ||| ||||| ||||| || ||| | || |||||||| ||||| ||| Sbjct 252641 GAGAGCGTGCGGCCATCCTCAAGCTGTTTTCCGGCGAAAATAAGACGCTGCTGGTCTGGA 252700 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| ||||| ||||| |||||| || || | | || | |||||||| || || Sbjct 252701 GGAATACCTTCCTTGTCCTGAATCTTCTGCTTGACGTTGTCGATGGTGTCGGAAGACTCA 252760 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| || | || ||||| || || || || || ||||||||||| Sbjct 252761 ACTTCCAAAGTGATTGTCTTGCCAGTGAGTGTCTTGACGAAAATCTGCAT 252810 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420133693386456