Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lobosporangium_20transversale_20[genbank_20GCA_5F002105155.1_202017- 04-20] 138 sequences; 42,768,949 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq47 226 5e-54 seq49 187 5e-42 seq57 123 5e-23 seq1 84.2 4e-11 >seq47 Length=818200 Score = 226 bits (250), Expect = 5e-54 Identities = 704/1083 (65%), Gaps = 29/1083 (3%) Strand=Plus/Minus Query 244091 TTCACCACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGGC 244150 ||||| | ||| |||||||||| ||||| || || ||||| || | | ||| Sbjct 306050 TTCACAATCTGGAACTCTCCCGCAAGCACTCGACGTGTGTAGATATTAGAGGTATAGGGC 305991 Query 244151 TCGATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACACC 244210 |||| | || || ||||| ||||| | || || || ||||| || | |||| Sbjct 305990 TCGAAACATTCATTGAAACCCAGGATCTGTGAGGTCGAAGCCGTAGGCATCGGTGCCACC 305931 Query 244211 AGCAGACTGTTCCTCACGCCGTGCCTCTGGATGCGGAGTCTGAGCTCGTTCCAGTCCCAC 244270 | || ||| | ||| || ||| || ||| | | | |||| | ||||||||| Sbjct 305930 AAGAGTGAGTTGCGCACTCCATGCTGCTTGATACTGGCCCGGAGCGTATCCCAGTCCCAG 305871 Query 244271 ATGCCCGAGAGGTCCTCGCGTTTGAGGCCCCACATGTCAAACTGCAGCAGCCCCTTGCTG 244330 | | || |||| ||||| | ||||||||||| |||| | ||||| Sbjct 305870 A-GATCG-GAGG-----GCGTT--ACCCCCCACATGTCCGGTTGCAAGATTCCCTTCGAA 305820 Query 244331 ACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCGCGCTGGGCCAGCTTACAGCTCTCG 244390 ||||| |||||| |||||| || | ||| || ||| |||| || |||| Sbjct 305819 ACGGGTGAGCCCTCATAGGTCTCATAAGTACCCTCCTCCTGAGCCATCTCACAGGATGAT 305760 Query 244391 TCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGCGGGCCTTGCCG 244450 || | || || | |||||||||||||| ||| |||||||| | || |||| | Sbjct 305759 TCCAAAGCCGCATGATAGATGGTCTCGAAAATCTGCTTGTTCAACTGACGTGCCTCGGGT 305700 Query 244451 CAGGTGAAGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCCCTGCACGCCGATGCCG 244510 || ||||| |||| |||| | ||||| | || || || ||||| || || | || Sbjct 305699 GAGTCAAAGGGCATGCGCATCTTGATGAATGCATCCGCTAGACCCTGGACACCCACACCC 305640 Query 244511 ATGGGTCTGTGTCGCTTGTTGGAGCGCATGGCTTCGGGCACGGGGTAAAAGTTGCCGTCG 244570 | || | || ||||||||||| ||| || || || || || || |||| || Sbjct 305639 ACAGGACGATGACGCTTGTTGGACCGCTCTGCCTCTGGAACAGGATAGTAGTTCTGATCA 305580 Query 244571 ATCACCTTGTTGAGGTTGCGGGTGATCATGCGGACGACGTCGGCCAGCAGCTGAAAGTCG 244630 || | |||||| | ||||||||| | | | ||| | | |||| || ||||| Sbjct 305579 ATAATCTTGTTCAAGTTGCGGGTCACGACCTTGGTGACCTGGTGAAGCATCTTGAAGTCA 305520 Query 244631 TACTCGTAGGGATCCTCGGCGATGGTGATCCTCACAAACTCGTTGAGGGCGACGCTGGCC 244690 ||| | ||| | |||| ||| ||| || || | |||||| Sbjct 305519 TACGTCT---GATTAT---------TGATA-----AAAGTCGGC-AGCGCAATACTGGCC 305478 Query 244691 AGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGGTTA 244750 | ||| ||||| || || || || | || |||| | |||||||| || || | ||| Sbjct 305477 AAGTTACAGACCGCTACTTCGTCTGGACTGCTGTATTCAACAATCTCTGTACACAAATTA 305418 Query 244751 CTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTGTAG 244810 ||||||||||| || || |||| ||| ||||| || || |||||| || |||||||| Sbjct 305417 CTGCACTTGATCGTTCCAAGGTTCTGTTGATTCGATTTACGGTTGCAAGCATCCTTGTAA 305358 Query 244811 AGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAGGTCCCTA 244870 |||||| | ||| ||||||||| |||||| | || | | |||||| | | Sbjct 305357 AGCATGTAAGGCGTACCGGTCTCGGTCTGGGCCTCCAGAATAGCATACCAGAGTTTCTGG 305298 Query 244871 GCCTTGACCGTCCTGCGAGCCTTGCCCTCTGCCTCGTAGCGGGTGTACAGGGCCTCGAAC 244930 ||||||| ||| |||| || ||||| ||| || || || || ||||||| Sbjct 305297 GCCTTGATGGTCTTGCGGGCACGACCCTCACGCTCATATCGATGATAGAGTTCCTCGAAT 305238 Query 244931 TCGGGGCCCCAGACCTCGTCTAGGCCGGGGCACGACGCCGGGCACATGAGACTCCACTCG 244990 || |||||| || || | || || || | ||| || || | |||||||| || Sbjct 305237 TCTTCGCCCCACACATCTTGAAGTCCAGGTGCCTCCGCAGGACAGAACAGACTCCAGTCA 305178 Query 244991 CCGCCGTCCTTGACCC-TCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTC 245049 || |||| || | ||| |||||| || || ||||||||||| || | ||| | || Sbjct 305177 GCGTTTTCCTCGATACGTCT-CATGAACAGATCAGGGATCCAGAGAGCATAGAACAAATC 305119 Query 245050 CCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTC 245109 | | | ||| ||| ||||||||||| | || |||| || |||||||| || Sbjct 305118 ACGAGCACGGGTCTCCTCCTTTCCAGTGTTCTTGCGAAGATCCAGGAATTCAAAGACATC 305059 Query 245110 GACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCTCCCTGGTC 245169 | | |||||||| || | || | || | ||| || || ||||||||||| ||||| || Sbjct 305058 GGCATGCCAGGGTTCGAGATACATGGCAAAGGCACCAGGACGCTTGTTGCCGCCCTGATC 304999 Query 245170 CAC 245172 || Sbjct 304998 AAC 304996 >seq49 Length=746914 Score = 187 bits (206), Expect = 5e-42 Identities = 334/488 (68%), Gaps = 0/488 (0%) Strand=Plus/Minus Query 244685 CTGGCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAG 244744 ||||||| ||| ||||| || ||||| || | | || |||| | || ||||| || ||| Sbjct 373897 CTGGCCAAGTTACAGACAGCGACCTCATCAGGGCTGCTGTATTCGATGATCTCTGTACAG 373838 Query 244745 AGGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCC 244804 || ||||| |||||||| || |||| || ||| ||||| |||||| ||| ||||| || Sbjct 373837 AGATTACTACACTTGATAGTCCCCAAGTTCTGTTGATTCGACTTGCGGTTACAGGCATCT 373778 Query 244805 TTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAGG 244864 || || ||||| ||||| || ||||| || || | |||| | ||| || Sbjct 373777 TTATAAAGCATATAGGGCGTTCCAGTCTCTGTTTGAGCCTCCAGGATTGCGAACCACAGC 373718 Query 244865 TCCCTAGCCTTGACCGTCCTGCGAGCCTTGCCCTCTGCCTCGTAGCGGGTGTACAGGGCC 244924 | | |||||||| ||| | |||||| || || ||||||| | || || | Sbjct 373717 TTCTGAGCCTTGATAGTCTTACGAGCCCGTCCTTCCAGCTCGTAGGTCATATAGAGTTTC 373658 Query 244925 TCGAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCACGACGCCGGGCACATGAGACTC 244984 || ||||| ||||||||| || | ||| || || | || || || | ||||||| Sbjct 373657 TCAAACTCTTCGCCCCAGACATCTTGTAGACCAGGCGCCTCAGCAGGACAAAAGAGACTC 373598 Query 244985 CACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAG 245044 || ||||| | | | | | |||||| ||||| ||||||||||| || |||| Sbjct 373597 CAATCGCCATTCTGTTCAATTCGTTTCATGAACAGGTCAGGGATCCAGAGTCCCAGGAAC 373538 Query 245045 AGGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAG 245104 | ||| | | | ||| ||| ||| || ||||| | || |||||||| ||||| Sbjct 373537 AAGTCTCGAGCACGAGTCTCTTCCTTGCCTGTATTCTTGCGAAGGTCCAAAAAATCAAAC 373478 Query 245105 ACGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCTCCC 245164 ||||| | ||||| || |||| || | || | ||| || ||||||||||| || || Sbjct 373477 ACGTCCGCATGCCAAGGTTCCAAATACATGGCAAAGGCTCCTGGCCGCTTGTTTCCACCT 373418 Query 245165 TGGTCCAC 245172 || || || Sbjct 373417 TGATCTAC 373410 >seq57 Length=574579 Score = 123 bits (136), Expect = 5e-23 Identities = 162/222 (73%), Gaps = 2/222 (1%) Strand=Plus/Plus Query 42645 AAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGG 42704 |||||||| | |||||| | || ||||| | |||||||| || | || | Sbjct 520870 AAGAAGGCTGCCTGGGCCATGAAGTGGATTTCTGACCAGGACGCAACCTTTGCTGAACGT 520929 Query 42705 CTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTC 42764 |||| |||||| | || || || |||||||||||||| ||||| ||||| |||||||| Sbjct 520930 TTGGTCGCCTTTGCTGCTGTTGAAGGCATCTTCTTCTCTGGCGCATTCGCTTCCATCTTT 520989 Query 42765 TGGCTCAAGCAG-AAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAG 42823 |||||||| || ||| || ||||| || || |||||||| |||||||||||| | Sbjct 520990 TGGCTCAAAAAGCGTGGTCTC-ATGCCTGGTCTGACCTTCTCCAACGAACTCATCTCGCG 521048 Query 42824 GGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTC 42865 || ||||| || || | || || |||||| | ||||||| Sbjct 521049 TGATGAGGGTCTCCACACTGATTTCGCCTGCTTATTGTTCTC 521090 >seq1 Length=1854208 Score = 84.2 bits (92), Expect = 4e-11 Identities = 138/199 (69%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 244928 AACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCACGACGCCGGGCACATGAGACTCCAC 244987 ||||| |||||||||| ||||| || || ||| | || || | | | ||| Sbjct 982479 AACTCTTGGCCCCAGACTCTATCTAGACCAGGACACTCTCCTGGACAGAACAAATGCCAA 982420 Query 244988 TCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGG 245047 || || | |||| ||| | |||||||||||| |||||||||||||| | ||| ||| Sbjct 982419 TCACCATCCTCCTGGACGCGCTGCATGAAGAGATCGGGGATCCAGAGACCTAAGAACAGG 982360 Query 245048 TCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACG 245107 || | | | | || || |||||| ||||| | || |||||||| ||||| || Sbjct 982359 TCACGTGCACGGAGTTCCTCATGGCCAGTATTCTTTCGCAAATCCAAAAATTCAAATACA 982300 Query 245108 TCGACGTGCCAGGGCTCCA 245126 || | ||||| ||||||| Sbjct 982299 TCCGCATGCCAAGGCTCCA 982281 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944337571014880