Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lobosporangium_20transversale_20[genbank_20GCA_5F002105155.1_202017- 04-20] 138 sequences; 42,768,949 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq53 132 1e-25 seq117 131 4e-25 seq79 131 4e-25 seq84 105 2e-17 seq57 98.7 2e-15 >seq53 Length=681236 Score = 132 bits (146), Expect = 1e-25 Identities = 168/230 (73%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 || |||||||| | ||| || | |||| || || ||||||||||| ||||| | | Sbjct 252356 CCGCCGCGGAGACGAAGGACCAAGTGAAGGGTAGACTCCTTTTGGATATTGTAGTCAGAG 252415 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 ||||| || || ||||| | |||||||| |||||||| || ||||| || |||||| Sbjct 252416 AGCGTACGACCATCTTCAAGCTGTTTTCCGGCGAAGATGAGGCGCTGCTG---GTCTGGG 252472 Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || ||||| || ||||| || ||| || ||||| || || | ||| || || Sbjct 252473 GGAATACCTTCCTTGTCCTGAATCTTCTGCTTGACGTTATCGATGGTGTCGGAGGACTCA 252532 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| | ||||| || || ||||| | |||||||||||| |||||||| Sbjct 252533 ACTTCCAAAGTGATAGTTTTACCGGTTAAAGTCTTGACGAAAATCTGCAT 252582 Score = 132 bits (146), Expect = 1e-25 Identities = 168/230 (73%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 || |||||||| | ||| || | |||| || || ||||||||||| ||||| | | Sbjct 252812 CCGCCGCGGAGACGAAGGACCAAGTGAAGGGTAGACTCCTTTTGGATATTGTAGTCAGAG 252871 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 ||||| || || ||||| | |||||||| |||||||| || ||||| || |||||| Sbjct 252872 AGCGTACGACCATCTTCAAGCTGTTTTCCGGCGAAGATGAGGCGCTGCTG---GTCTGGG 252928 Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || ||||| || ||||| || ||| || ||||| || || | ||| || || Sbjct 252929 GGAATACCTTCCTTGTCCTGAATCTTCTGCTTGACGTTATCGATGGTGTCGGAGGACTCA 252988 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| | ||||| || || ||||| | |||||||||||| |||||||| Sbjct 252989 ACTTCCAAAGTGATAGTTTTACCGGTTAAAGTCTTGACGAAAATCTGCAT 253038 Score = 132 bits (146), Expect = 1e-25 Identities = 147/195 (75%), Gaps = 6/195 (3%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || ||||| |||||||| |||| ||||| ||||| ||||| | ||| ||||| || ||| Sbjct 253076 TCCTTTTGAATATTATAATCGGAAAGCGTACGTCCATCTTCAAGTTGCTTTCCAGCAAAG 253135 Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 || |||||||| || ||||| || ||||| || |||||||||||| ||| || Sbjct 253136 ATGAGACGCTGCTGG---TCTGGAGGAATACCTTCCTTGTCCTGGATTTTCTGTTTAACA 253192 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || || |||| ||| || ||||| || | || || ||||| ||||| || |||||| Sbjct 253193 TTGTCGATAGTGTCGGAGGACTCTACCTCCAAAGTAATGGTCTTGCCGGTGAGTGTCTTG 253252 Query 288460 ACGAATATCTGCATT 288474 || || ||||||||| Sbjct 253253 ACAAAAATCTGCATT 253267 Score = 127 bits (140), Expect = 5e-24 Identities = 167/230 (73%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 || ||||| || | ||| || || || | ||| ||| || || ||||||||||| | | Sbjct 252584 CCGCCGCGAAGACGAAGAACTAGGTGGAGGGTGGATTCCTTCTGAATATTATAGTCAGAG 252643 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT--- 288363 |||||||| || || || | |||||||| ||||| || |||||||| || ||| Sbjct 252644 AGCGTGCGGCCATCCTCAAGCTGTTTTCCGGCGAAAATAAGACGCTGCTG---GTCTGGA 252700 Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || || ||||| || ||||| || ||| || ||||| || || | ||| || || Sbjct 252701 GGAATACCTTCCTTGTCCTGAATCTTCTGCTTGACGTTGTCGATGGTGTCGGAAGACTCA 252760 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| | ||||| ||||| || || || ||||||||||| |||||||| Sbjct 252761 ACTTCCAAAGTGATTGTCTTGCCAGTGAGTGTCTTGACGAAAATCTGCAT 252810 Score = 123 bits (136), Expect = 6e-23 Identities = 168/233 (72%), Gaps = 6/233 (3%) Strand=Plus/Plus Query 288244 TGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCG 288303 || ||||| || || | ||| || | |||| || || ||||||||||| ||||| Sbjct 252125 TGGCCACCACGAAGACGAAGGACCAAGTGAAGGGTAGACTCCTTTTGGATATTGTAGTCA 252184 Query 288304 GCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT 288363 | ||||||||| || || || | |||||||| ||||| || |||||||| || ||| Sbjct 252185 GAGAGCGTGCGACCATCCTCAAGCTGTTTTCCGGCGAAAATAAGACGCTGCTG---GTCT 252241 Query 288364 ---GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGAT 288420 || || ||||| || ||||| || ||| || ||||| || || | ||| || Sbjct 252242 GGAGGAATACCTTCCTTGTCCTGAATCTTCTGCTTGACGTTGTCGATGGTGTCGGAAGAC 252301 Query 288421 TCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || ||||| | ||||| ||||| || || || ||||||||||| |||||||| Sbjct 252302 TCAACTTCCAAAGTGATTGTCTTGCCAGTGAGTGTCTTGACGAAAATCTGCAT 252354 >seq117 Length=942176 Score = 131 bits (144), Expect = 4e-25 Identities = 257/377 (68%), Gaps = 6/377 (2%) Strand=Plus/Minus Query 72417 CAAGCGTCTTCGTCAGAGTTGTATGGAAAAGTGCAAGAAATTCCTCAGACGGAAAATACT 72476 || || ||| | ||||| ||||| ||| | || || ||||||||||||| |||| ||| Sbjct 192862 CAGGCTTCTACATCAGAATTGTACGGACAGGTCCAGGAAATTCCTCAGAGCGAAACCACT 192803 Query 72477 CCGTTTTATCCTCGAAGCCCTTACGGTGTTGCAAAGTTGTACGCTTATTGGATCTGTAAA 72536 || ||||||||||| ||||| ||||| || ||| |||| || || |||||| Sbjct 192802 CCCTTTTATCCTCGCTCTCCTTATGGTGTCGCCAAGATGTATGCCTACTGGATCACAGTC 192743 Query 72537 AATTACCGTGAGTCGTATAACATGTATGTATGCAACTCGATTTGTTTCAATCACGAGAGT 72596 || ||||||||| | || |||||||||| |||||| || |||||| |||||| | Sbjct 192742 AACTACCGTGAGGCCTACAACATGTATGCTTGCAACGGTATCCTTTTCAACCACGAGTCT 192683 Query 72597 CCCAACAGAGGCCATCAGTTCGTGACTCGTAAAATCACGAAGGTGGTCGCGAATATTTTC 72656 || | | || | || ||||| ||||| ||||| | ||||| || || Sbjct 192682 CCTCGCCGCGGTCGCACCTTTGTGACCCGTAAGATCACCTGCGCTGTCGC--AT-CAATC 192626 Query 72657 AATGGTGTCGAAAAA---TGCATGTATCTCGGTAATATAGATGCCAAAAGAGATTGGGGA 72713 || | | || || ||| | || |||||||| | || || || | || ||||| Sbjct 192625 AAGTTGGGCAAACAAGAGTGCCTCTACCTCGGTAACTTGGACGCGAAGCGTGACTGGGGC 192566 Query 72714 TATGCGAAGGATTACGTAGAAGCAATGTGGTTGATGCTGCAACAAGATACTCCGGATGAC 72773 |||| |||||||| || | |||||| |||||| ||||| || | | || ||| Sbjct 192565 CATGCTCGCGATTACGTCGAGGGTATGTGGAGGATGCTTCAACAGGAAAAGGCCGAGGAC 192506 Query 72774 TATGTGATTGCAACAGG 72790 | ||| | ||||| || Sbjct 192505 TTTGTCCTGGCAACGGG 192489 >seq79 Length=364526 Score = 131 bits (144), Expect = 4e-25 Identities = 255/378 (67%), Gaps = 14/378 (4%) Strand=Plus/Plus Query 72420 GCGTCTTCGTCAGAGTTGTATGGAAAAGTGCAAGAAATTCCTCAGACGGAAAATACTCCG 72479 || ||| | || |||||||| || |||| || || ||||| |||| |||| ||||| Sbjct 32374 GCTTCTACCTCTGAGTTGTACGGTCAAGTTCAGGAGATTCCCCAGAGCGAAACCACTCCT 32433 Query 72480 TTTTATCCTCGAAGCCCTTACGGTGTTGCAAAGTTGTACGCTTATTGGATCTGTAAAAAT 72539 || |||||||| || || |||||||| ||||||||||| || |||||| | || Sbjct 32434 TTCTATCCTCGCTCACCCTATGGTGTTGCCAAGTTGTACGCCTACTGGATCACTGTCAAC 32493 Query 72540 TACCGTGAGTCGTATAACATGTATGTATGCAACTCGATTTGTTTCAATCACGAGAGTCCC 72599 ||||| ||| | || |||||||||| |||||| || ||||| |||||| ||| Sbjct 32494 TACCGCGAGGCCTACAACATGTATGCTTGCAACGGTATCCTCTTCAACCACGAGTCACCC 32553 Query 72600 AACAGAGGCCATCAGTTCGTGACTCGTAAAATCACGAAGGTGGTCGCGAATATTTTCAAT 72659 | | |||| | ||||| || || || ||||| | ||||| |||||| Sbjct 32554 CGCCGTGGCCGTACCTTCGTCACCCGCAAGATCACCTGCGCTGTCGC-------TTCAAT 32606 Query 72660 GGTGTCG-------AAAAATGCATGTATCTCGGTAATATAGATGCCAAAAGAGATTGGGG 72712 || | || | ||| | || ||||| || | |||||||| | |||||||| Sbjct 32607 CAAGTTGGGCAAGCAAGAGTGCCTTTACCTCGGAAACTTGGATGCCAAGCGTGATTGGGG 32666 Query 72713 ATATGCGAAGGATTACGTAGAAGCAATGTGGTTGATGCTGCAACAAGATACTCCGGATGA 72772 |||| ||||| || || | |||||| ||||| || || || | ||| || || Sbjct 32667 TCATGCCCGCGATTATGTTGAGGGTATGTGGAGAATGCTCCAGCAGGAGAGTCCTGAGGA 32726 Query 72773 CTATGTGATTGCAACAGG 72790 || ||| | || ||||| Sbjct 32727 CTTTGTCCTGGCCACAGG 32744 >seq84 Length=1068272 Score = 105 bits (116), Expect = 2e-17 Identities = 162/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | | || | ||||| || || || ||||| |||||||| | Sbjct 721126 CCACCACGGAGACGCAAGACCAAATGAAGAGTAGACTCCTTCTGGATGTTATAGTCAGAA 721067 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || || || || || | || || || || ||||| |||||||| || |||||| Sbjct 721066 AGGGTACGGCCATCCTCAAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGG---TCTGGG 721010 Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || || ||||| || ||||| ||| || || || || || | ||| || || Sbjct 721009 GGAATACCCTCTTTGTCTTGGATCTTCTGCTTGACATTGTCAATGGTATCAGAGGACTCG 720950 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || ||||| ||||| ||||| ||||||| ||||||||||| |||||||| Sbjct 720949 ACCTCGAGGGTGATGGTCTTGCCGGTCAAGGTCTTGACGAAAATCTGCAT 720900 Score = 102 bits (112), Expect = 2e-16 Identities = 163/233 (70%), Gaps = 6/233 (3%) Strand=Plus/Minus Query 288244 TGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCG 288303 || |||||||| || | | ||| | ||||| ||| || || || || |||||||| Sbjct 721585 TGGCCACCGCGAAGGCGCAATACCAAATGAAGGGTGGACTCCTTCTGAATGTTATAGTCA 721526 Query 288304 GCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT 288363 | || || || || || || | || || || || || || || ||||| || ||| Sbjct 721525 GAAAGGGTACGGCCATCCTCAAGCTGCTTGCCAGCAAAAATGAGGCGCTGCTGG---TCT 721469 Query 288364 GGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGAT 288420 ||| || || || ||||| ||||| ||| || || || || || | ||| ||| Sbjct 721468 GGGGGAATACCCTCCTTATCTTGGATCTTCTGCTTGACATTGTCAATGGTATCAGAGGAT 721409 Query 288421 TCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || || ||||| ||||| ||||||| ||||||||||| |||||||| Sbjct 721408 TCGACCTCAAGGGTGATGGTCTTGCCGGTCAAGGTCTTGACGAAAATCTGCAT 721356 Score = 100 bits (110), Expect = 7e-16 Identities = 161/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | || || | || | ||| || || ||||| || || |||| | Sbjct 721354 CCACCACGGAGGCGCAGCACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAATCGGAG 721295 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || || || ||||| || || || || ||||| || || ||||| || ||||| Sbjct 721294 AGGGTACGGCCATCTTCCAACTGCTTGCCGGCGAAAATGAGGCGCTGCTGG---TCTGGA 721238 Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || ||||| ||||| || || ||| || ||||| || || | || || || Sbjct 721237 GGAATGCCTTCCTTATCTTGAATCTTCTGCTTGACGTTATCGATCGTGTCAGAGGACTCG 721178 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || ||||| ||||| ||||||| ||||||||||| |||||||| Sbjct 721177 ACCTCAAGGGTGATGGTCTTGCCGGTCAAGGTCTTGACGAAAATCTGCAT 721128 >seq57 Length=574579 Score = 98.7 bits (108), Expect = 2e-15 Identities = 145/203 (71%), Gaps = 2/203 (1%) Strand=Plus/Plus Query 269112 CGAAAAAGAGTTCATTTGTGACGCTATCCCA-TGTTCTATGATCGGTATGAATGCCGATC 269170 |||| |||||||| | || ||| |||| || | | |||| |||||||||||| | Sbjct 521154 CGAACAAGAGTTCTTGACCGATGCTCTCCCTGTGATGT-TGATTGGTATGAATGCCAAGT 521212 Query 269171 TCATGAATCAATATATCGAATTCGTGGCTGATCGTATCTTCACGGCACTCGGTTATGAGA 269230 | ||||| ||||| || || || ||||| |||||| |||| || ||||| | | Sbjct 521213 TGATGAAACAATACATTGAGTTTGTGGCCGATCGTCTCTTGGTCGCGCTCGGAAACCCAA 521272 Query 269231 AAGTGTACAATTCGAAGAATCCCTTCGCCTTTATGGAACTAATTTCGCTCGAAGGAAAGA 269290 || |||||| ||||||| || | ||||||||| | || || || | || |||| Sbjct 521273 AACATTACAATGTTGAGAATCCTTTTGACTTTATGGACTTGATCTCTCTTCAGGGCAAGA 521332 Query 269291 CGAACTTCTTCGAAAAGCGTGTC 269313 | |||||||| || ||||||||| Sbjct 521333 CCAACTTCTTTGAGAAGCGTGTC 521355 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179652314223564