Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lobosporangium_20transversale_20[genbank_20GCA_5F002105155.1_202017- 04-20] 138 sequences; 42,768,949 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq117 131 4e-25 seq79 131 4e-25 seq24 104 5e-17 >seq117 Length=942176 Score = 131 bits (144), Expect = 4e-25 Identities = 257/377 (68%), Gaps = 6/377 (2%) Strand=Plus/Minus Query 68406 CAAGCGTCTTCGTCAGAGTTGTATGGAAAAGTGCAAGAAATTCCTCAGACGGAAAATACT 68465 || || ||| | ||||| ||||| ||| | || || ||||||||||||| |||| ||| Sbjct 192862 CAGGCTTCTACATCAGAATTGTACGGACAGGTCCAGGAAATTCCTCAGAGCGAAACCACT 192803 Query 68466 CCGTTTTATCCTCGAAGCCCTTACGGTGTTGCAAAGTTGTACGCTTATTGGATCTGTAAA 68525 || ||||||||||| ||||| ||||| || ||| |||| || || |||||| Sbjct 192802 CCCTTTTATCCTCGCTCTCCTTATGGTGTCGCCAAGATGTATGCCTACTGGATCACAGTC 192743 Query 68526 AATTACCGTGAGTCGTATAACATGTATGTATGCAACTCGATTTGTTTCAATCACGAGAGT 68585 || ||||||||| | || |||||||||| |||||| || |||||| |||||| | Sbjct 192742 AACTACCGTGAGGCCTACAACATGTATGCTTGCAACGGTATCCTTTTCAACCACGAGTCT 192683 Query 68586 CCCAACAGAGGCCATCAGTTCGTGACTCGTAAAATCACGAAGGTGGTCGCGAATATTTTC 68645 || | | || | || ||||| ||||| ||||| | ||||| || || Sbjct 192682 CCTCGCCGCGGTCGCACCTTTGTGACCCGTAAGATCACCTGCGCTGTCGC--AT-CAATC 192626 Query 68646 AATGGTGTCGAAAAA---TGCATGTATCTCGGTAATATAGATGCCAAAAGAGATTGGGGA 68702 || | | || || ||| | || |||||||| | || || || | || ||||| Sbjct 192625 AAGTTGGGCAAACAAGAGTGCCTCTACCTCGGTAACTTGGACGCGAAGCGTGACTGGGGC 192566 Query 68703 TATGCGAAGGATTACGTAGAAGCAATGTGGTTGATGCTGCAACAAGATACTCCGGATGAC 68762 |||| |||||||| || | |||||| |||||| ||||| || | | || ||| Sbjct 192565 CATGCTCGCGATTACGTCGAGGGTATGTGGAGGATGCTTCAACAGGAAAAGGCCGAGGAC 192506 Query 68763 TATGTGATTGCAACAGG 68779 | ||| | ||||| || Sbjct 192505 TTTGTCCTGGCAACGGG 192489 >seq79 Length=364526 Score = 131 bits (144), Expect = 4e-25 Identities = 255/378 (67%), Gaps = 14/378 (4%) Strand=Plus/Plus Query 68409 GCGTCTTCGTCAGAGTTGTATGGAAAAGTGCAAGAAATTCCTCAGACGGAAAATACTCCG 68468 || ||| | || |||||||| || |||| || || ||||| |||| |||| ||||| Sbjct 32374 GCTTCTACCTCTGAGTTGTACGGTCAAGTTCAGGAGATTCCCCAGAGCGAAACCACTCCT 32433 Query 68469 TTTTATCCTCGAAGCCCTTACGGTGTTGCAAAGTTGTACGCTTATTGGATCTGTAAAAAT 68528 || |||||||| || || |||||||| ||||||||||| || |||||| | || Sbjct 32434 TTCTATCCTCGCTCACCCTATGGTGTTGCCAAGTTGTACGCCTACTGGATCACTGTCAAC 32493 Query 68529 TACCGTGAGTCGTATAACATGTATGTATGCAACTCGATTTGTTTCAATCACGAGAGTCCC 68588 ||||| ||| | || |||||||||| |||||| || ||||| |||||| ||| Sbjct 32494 TACCGCGAGGCCTACAACATGTATGCTTGCAACGGTATCCTCTTCAACCACGAGTCACCC 32553 Query 68589 AACAGAGGCCATCAGTTCGTGACTCGTAAAATCACGAAGGTGGTCGCGAATATTTTCAAT 68648 | | |||| | ||||| || || || ||||| | ||||| |||||| Sbjct 32554 CGCCGTGGCCGTACCTTCGTCACCCGCAAGATCACCTGCGCTGTCGC-------TTCAAT 32606 Query 68649 GGTGTCG-------AAAAATGCATGTATCTCGGTAATATAGATGCCAAAAGAGATTGGGG 68701 || | || | ||| | || ||||| || | |||||||| | |||||||| Sbjct 32607 CAAGTTGGGCAAGCAAGAGTGCCTTTACCTCGGAAACTTGGATGCCAAGCGTGATTGGGG 32666 Query 68702 ATATGCGAAGGATTACGTAGAAGCAATGTGGTTGATGCTGCAACAAGATACTCCGGATGA 68761 |||| ||||| || || | |||||| ||||| || || || | ||| || || Sbjct 32667 TCATGCCCGCGATTATGTTGAGGGTATGTGGAGAATGCTCCAGCAGGAGAGTCCTGAGGA 32726 Query 68762 CTATGTGATTGCAACAGG 68779 || ||| | || ||||| Sbjct 32727 CTTTGTCCTGGCCACAGG 32744 >seq24 Length=886838 Score = 104 bits (114), Expect = 5e-17 Identities = 184/265 (69%), Gaps = 5/265 (2%) Strand=Plus/Minus Query 333725 CTTCACGAACTCGGACAGATTTCCCTTGTACTTCTTCAGCTTTAGGTTAGGTTCGTAATG 333784 ||| || |||||||| ||||| ||||| ||| |||||||||| || | |||||||| Sbjct 374835 CTTGACAAACTCGGAAAGATTACCCTTATACATCTTCAGCTTC---TTGCGCTCGTAATG 374779 Query 333785 GATAATAGAGGTGCAAACAGCGTCGAGGAACCCGGAGTCGTGTGACACAATCACGCACGA 333844 | ||| |||||| ||| ||||||||| || ||||||||||| || || | | | Sbjct 374778 CAAAATGTTGGTGCACACATTGTCGAGGAATCCAGAGTCGTGTGAGACGATGATCGATGT 374719 Query 333845 AACGTCCTTAAGGTTGATCAGGTATTCAATCAGCCACCTCACGTTAGACACAGAAAGATG 333904 || | | || |||| |||||||| |||||| | | || | ||| | || Sbjct 374718 GACATTGGTCTGGCTGATGAGGTATTCTTCCAGCCATTTGATATTGGCGACATCCAAGTG 374659 Query 333905 GTTGGTCGGCTCGT-CAAGAAGTAGTAGCTTTGCGTTCAGGAGCATTGCACGTGCAAGAG 333963 ||| || || |||| ||| ||| || | | ||||||| | ||| || || || | Sbjct 374658 GTTAGTAGGTTCGTCCAACAAG-AGAATATCAGCGTTCATTAACATGGCGCGGGCCAACT 374600 Query 333964 CGAGTTTCATTTTCCACCCTCCTGA 333988 |||| ||||| ||||| ||||| || Sbjct 374599 CGAGCTTCATCTTCCAACCTCCGGA 374575 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102878049970300