Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lobosporangium_20transversale_20[genbank_20GCA_5F002105155.1_202017- 04-20] 138 sequences; 42,768,949 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq84 140 3e-28 seq53 125 7e-24 seq47 93.3 4e-14 >seq84 Length=1068272 Score = 140 bits (154), Expect = 3e-28 Identities = 149/197 (76%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || || || || || ||||||||||| | || ||| || | ||||| | |||||||||| Sbjct 721324 GTGGACTCCTTCTGGATGTTGTAATCGGAGAGGGTACGGCCATCTTCCAACTGCTTGCCG 721265 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 || ||||||| ||||||||||| |||||||| ||||| || ||||| || || ||||| Sbjct 721264 GCGAAAATGAGGCGCTGCTGGTCTGGAGGAATGCCTTCCTTATCTTGAATCTTCTGCTTG 721205 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 || || | || ||| || || || || | || | ||||||||||||||| || Sbjct 721204 ACGTTATCGATCGTGTCAGAGGACTCGACCTCAAGGGTGATGGTCTTGCCGGTCAAGGTC 721145 Query 64427 TTTACGAAAATTTGCAT 64443 || |||||||| ||||| Sbjct 721144 TTGACGAAAATCTGCAT 721128 Score = 138 bits (152), Expect = 1e-27 Identities = 153/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 64240 ATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTG 64299 ||||| || || || || || ||||| || || | | ||| || | || |||||||| Sbjct 721103 ATGAAGAGTAGACTCCTTCTGGATGTTATAGTCAGAAAGGGTACGGCCATCCTCAAGCTG 721044 Query 64300 CTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTT 64359 |||||||||| | ||||| ||||||||||| || ||||| || ||||| ||||| || || Sbjct 721043 CTTGCCGGCAAAGATGAGACGCTGCTGGTCTGGGGGAATACCCTCTTTGTCTTGGATCTT 720984 Query 64360 TTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGT 64419 ||||| ||| || | |||||| || || || || | || | |||||||||||| Sbjct 720983 CTGCTTGACATTGTCAATGGTATCAGAGGACTCGACCTCGAGGGTGATGGTCTTGCCGGT 720924 Query 64420 CAAAGTTTTTACGAAAATTTGCAT 64443 ||| || || |||||||| ||||| Sbjct 720923 CAAGGTCTTGACGAAAATCTGCAT 720900 Score = 138 bits (152), Expect = 1e-27 Identities = 153/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 64240 ATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTG 64299 ||||| || || || || |||||||| || || | | ||| || | || |||||||| Sbjct 721559 ATGAAGGGTGGACTCCTTCTGAATGTTATAGTCAGAAAGGGTACGGCCATCCTCAAGCTG 721500 Query 64300 CTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTT 64359 |||||| ||| ||||||| ||||||||||| || ||||| || || || ||||| || || Sbjct 721499 CTTGCCAGCAAAAATGAGGCGCTGCTGGTCTGGGGGAATACCCTCCTTATCTTGGATCTT 721440 Query 64360 TTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGT 64419 ||||| ||| || | |||||| || || || || | || | |||||||||||| Sbjct 721439 CTGCTTGACATTGTCAATGGTATCAGAGGATTCGACCTCAAGGGTGATGGTCTTGCCGGT 721380 Query 64420 CAAAGTTTTTACGAAAATTTGCAT 64443 ||| || || |||||||| ||||| Sbjct 721379 CAAGGTCTTGACGAAAATCTGCAT 721356 Score = 107 bits (118), Expect = 2e-18 Identities = 146/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 64240 ATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTG 64299 ||||| || || || || || ||||| || || | || || || | || |||||||| Sbjct 720875 ATGAAGGGTAGACTCCTTCTGGATGTTATAGTCAGAGAGAGTACGGCCATCCTCAAGCTG 720816 Query 64300 CTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTT 64359 ||| |||||| | ||||| ||||||||||| || ||||| || || || ||||| || || Sbjct 720815 CTTACCGGCAAAGATGAGACGCTGCTGGTCTGGGGGAATACCCTCCTTGTCTTGGATCTT 720756 Query 64360 TTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGT 64419 ||||| || || | || || || || || || | || | |||||||||||| Sbjct 720755 CTGCTTGACGTTGTCAATGGTGTCGGAGGACTCGACCTCAAGGGTGATGGTCTTGCCGGT 720696 Query 64420 CAAAGTTTTTACGAAAATTTGCAT 64443 | ||| || ||||| || ||||| Sbjct 720695 GAGAGTCTTAACGAAGATCTGCAT 720672 >seq53 Length=681236 Score = 125 bits (138), Expect = 7e-24 Identities = 152/207 (73%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 64241 TGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGC 64300 |||| ||||| || |||||||| || ||||| | | || || | |||||||| ||| Sbjct 253064 TGAAGGGTCGACTCCTTTTGAATATTATAATCGGAAAGCGTACGTCCATCTTCAAGTTGC 253123 Query 64301 TTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTT 64360 || || ||| | ||||| ||||||||||| |||||||| ||||| || || || ||||| Sbjct 253124 TTTCCAGCAAAGATGAGACGCTGCTGGTCTGGAGGAATACCTTCCTTGTCCTGGATTTTC 253183 Query 64361 TGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTC 64420 || || ||| || | || || || || || || | ||| | |||||||||||| Sbjct 253184 TGTTTAACATTGTCGATAGTGTCGGAGGACTCTACCTCCAAAGTAATGGTCTTGCCGGTG 253243 Query 64421 AAAGTTTTTACGAAAATTTGCATTTTA 64447 | || || || ||||| ||||||||| Sbjct 253244 AGTGTCTTGACAAAAATCTGCATTTTA 253270 Score = 118 bits (130), Expect = 1e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||||||||| | | ||| || | |||| || || || ||||| || ||||| || | Sbjct 252355 ACCGCCGCGGAGACGAAGGACCAAGTGAAGGGTAGACTCCTTTTGGATATTGTAGTCAGA 252414 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 || || || | ||||||||||| || ||||| | ||||| ||||||||||| || || Sbjct 252415 GAGCGTACGACCATCTTCAAGCTGTTTTCCGGCGAAGATGAGGCGCTGCTGGTCTGGGGG 252474 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 ||| ||||| || || || || || ||||| || || | || || || || || Sbjct 252475 AATACCTTCCTTGTCCTGAATCTTCTGCTTGACGTTATCGATGGTGTCGGAGGACTCAAC 252534 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||| | ||| | || || ||||| ||||| || |||||||| ||||| Sbjct 252535 TTCCAAAGTGATAGTTTTACCGGTTAAAGTCTTGACGAAAATCTGCAT 252582 Score = 118 bits (130), Expect = 1e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||||||||| | | ||| ||||| || | || ||||| || ||||| || || || | Sbjct 252583 ACCGCCGCGAAGACGAAGAACTAGGTGGAGGGTGGATTCCTTCTGAATATTATAGTCAGA 252642 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 || ||||| | || |||||||| || ||||| |||| || ||||||||||| ||||| Sbjct 252643 GAGCGTGCGGCCATCCTCAAGCTGTTTTCCGGCGAAAATAAGACGCTGCTGGTCTGGAGG 252702 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 ||| ||||| || || || || || ||||| || || | || || | || || Sbjct 252703 AATACCTTCCTTGTCCTGAATCTTCTGCTTGACGTTGTCGATGGTGTCGGAAGACTCAAC 252762 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||| | ||| | |||||||| || | || || |||||||| ||||| Sbjct 252763 TTCCAAAGTGATTGTCTTGCCAGTGAGTGTCTTGACGAAAATCTGCAT 252810 Score = 118 bits (130), Expect = 1e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||||||||| | | ||| || | |||| || || || ||||| || ||||| || | Sbjct 252811 ACCGCCGCGGAGACGAAGGACCAAGTGAAGGGTAGACTCCTTTTGGATATTGTAGTCAGA 252870 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 || || || | ||||||||||| || ||||| | ||||| ||||||||||| || || Sbjct 252871 GAGCGTACGACCATCTTCAAGCTGTTTTCCGGCGAAGATGAGGCGCTGCTGGTCTGGGGG 252930 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 ||| ||||| || || || || || ||||| || || | || || || || || Sbjct 252931 AATACCTTCCTTGTCCTGAATCTTCTGCTTGACGTTATCGATGGTGTCGGAGGACTCAAC 252990 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||| | ||| | || || ||||| ||||| || |||||||| ||||| Sbjct 252991 TTCCAAAGTGATAGTTTTACCGGTTAAAGTCTTGACGAAAATCTGCAT 253038 Score = 105 bits (116), Expect = 7e-18 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 64241 TGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGC 64300 |||| || || || ||||| || ||||| || | || ||||| | || |||||||| Sbjct 252152 TGAAGGGTAGACTCCTTTTGGATATTGTAGTCAGAGAGCGTGCGACCATCCTCAAGCTGT 252211 Query 64301 TTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTT 64360 || ||||| |||| || ||||||||||| |||||||| ||||| || || || || || Sbjct 252212 TTTCCGGCGAAAATAAGACGCTGCTGGTCTGGAGGAATACCTTCCTTGTCCTGAATCTTC 252271 Query 64361 TGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTC 64420 ||||| || || | || || | || ||||| | ||| | |||||||| || Sbjct 252272 TGCTTGACGTTGTCGATGGTGTCGGAAGACTCAACTTCCAAAGTGATTGTCTTGCCAGTG 252331 Query 64421 AAAGTTTTTACGAAAATTTGCAT 64443 | || || |||||||| ||||| Sbjct 252332 AGTGTCTTGACGAAAATCTGCAT 252354 >seq47 Length=818200 Score = 93.3 bits (102), Expect = 4e-14 Identities = 108/146 (74%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 154590 GCCAAGTTGCAAACGGCAATTTCTTCAGAACTACTGTATTGCACAATTTCTGCGCACAAA 154649 |||||||| || || || | ||| || | ||| ||||||| ||||| |||| |||||| Sbjct 305480 GCCAAGTTACAGACCGCTACTTCGTCTGGACTGCTGTATTCAACAATCTCTGTACACAAA 305421 Query 154650 TTACTGCATCGAATGGTGCCCAGGTTTTTCTGATTCGATTTGATGTTGCATGCGTCTTTG 154709 |||||||| || || || ||||| | ||||||||||| |||||| || || ||| Sbjct 305420 TTACTGCACTTGATCGTTCCAAGGTTCTGTTGATTCGATTTACGGTTGCAAGCATCCTTG 305361 Query 154710 TACAAAATGTACGGGGTGCCCGTTTC 154735 || | ||||| || || || || || Sbjct 305360 TAAAGCATGTAAGGCGTACCGGTCTC 305335 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499643938112720