Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lobosporangium_20transversale_20[genbank_20GCA_5F002105155.1_202017- 04-20] 138 sequences; 42,768,949 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq57 132 5e-26 seq53 120 3e-22 seq84 111 2e-19 >seq57 Length=574579 Score = 132 bits (146), Expect = 5e-26 Identities = 340/514 (66%), Gaps = 23/514 (4%) Strand=Plus/Plus Query 52326 GTGCCGTGCGTTCGCAAAAAGGCTCAGTGGGCAATGAAGTGGATCGAGAGCGACACCGCC 52385 || || ||| ||||||| |||||| ||||| ||||||||||| | | ||| Sbjct 520855 GTTCCTTGCATTCGCAAGAAGGCTGCCTGGGCCATGAAGTGGATTTCTGACCAGGACGCA 520914 Query 52386 ACGCTGGCCGAGCGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGGCAGC 52445 || | || || || |||| ||||| || || || ||| | || || || ||| Sbjct 520915 ACCTTTGCTGAACGTTTGGTCGCCTTTGCTGCTGTTGAAGGCATCTTCTTCTCTGGCGCA 520974 Query 52446 TTTGCCGCCATCTTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGCAAC 52505 || || ||||||||| | |||| | || | ||||| || ||||| ||| |||| Sbjct 520975 TTCGCTTCCATCTTTTGGCTCAAAAAGCGTGGTCTCATGCCTGGTCTGACCTTCTCCAAC 521034 Query 52506 GAGTTGATATCGCGCGACGAAGGACTGCACACGGACTTTGCGTGCCTCTACTACA----- 52560 || | || ||||| || || || || ||||| || || || ||| | | | | Sbjct 521035 GAACTCATCTCGCGTGATGAGGGTCTCCACACTGATTTCGCCTGCTTATTGTTCTCATTG 521094 Query 52561 ---AGA-CGCG-CGTGACCGAAAAATTGGATTCGGACACGATCCTGAGCATGTTCAAGGA 52615 ||| | || | ||||| |||| || | || || | ||| | || || Sbjct 521095 TTGAGATCTCGTCCTGACCAAAAACGTGT---------CAATGCT-ATCAT-TACA--GA 521141 Query 52616 GGCGGTGGCTATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCAT 52675 ||| || | |||||| | ||||| || || | || || || || | || | || || Sbjct 521142 GGCTGTTGTGATCGAACAAGAGTTCTTGACCGATGCTCTCCCTGTGATGTTGATTGGTAT 521201 Query 52676 GAACGCGCAGTCCATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCT 52735 ||| || ||| ||| | ||||| ||||||||||| |||||||| ||||| ||| Sbjct 521202 GAATGCCAAGTTGATGAAACAATACATTGAGTTTGTGGCCGATCGTCTCTTGGTCGCGCT 521261 Query 52736 CGGGCAGCCAAAGTACTTCAACGCTCGCAATCCGTTTGAGTTTATGAACAACATTTCGCT 52795 ||| | ||||| | | ||| | | ||||| ||||| |||||| || || || || Sbjct 521262 CGGAAACCCAAAACATTACAATGTTGAGAATCCTTTTGACTTTATGGACTTGATCTCTCT 521321 Query 52796 TGAGGGCAAGACCAACTTTTTCGAGAAGCGAGTC 52829 | |||||||||||||||| || |||||||| ||| Sbjct 521322 TCAGGGCAAGACCAACTTCTTTGAGAAGCGTGTC 521355 >seq53 Length=681236 Score = 120 bits (132), Expect = 3e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||| | || || || | | | |||||||||||||| || || ||| Sbjct 253040 CCTCCACGGAGACGGAGGACCAAGTGAAGGGTCGACTCCTTTTGAATATTATAATCGGAA 253099 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||||| || || ||||| || || | | |||| |||||||| ||||| ||||| Sbjct 253100 AGCGTACGTCCATCTTCAAGTTGCTTTCCAGCAAAGATGAGACGCTGCTGGTCTGGAGGA 253159 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGTTCCACGGTGTCGGTCGACTCCAC 138566 |||||||| ||||| |||||| ||||| | |||| || | ||||||| ||||| || Sbjct 253160 ATACCTTCCTTGTCCTGGATTTTCTGTTTAACATTG-TCGATAGTGTCGGAGGACTCTAC 253218 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||| | || | || || || || || || || |||||||||||||| Sbjct 253219 CTCCAAAGTAATGGTCTTGCCGGTGAGTGTCTTGACAAAAATCTGCAT 253266 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 ||||| || | ||| | || || || | | | ||||||||||| || |||||||| Sbjct 252356 CCGCCGCGGAGACGAAGGACCAAGTGAAGGGTAGACTCCTTTTGGATATTGTAGTCAGAG 252415 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||||| || || || ||||| |||| |||| || ||||| ||||| || || Sbjct 252416 AGCGTACGACCATCTTCAAGCTGTTTTCCGGCGAAGATGAGGCGCTGCTGGTCTGGGGGA 252475 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 |||||||| ||||| || || || || | | || | |||||||| ||||| || Sbjct 252476 ATACCTTCCTTGTCCTGAATCTTCTGCTTGACGTTATCGATGGTGTCGGAGGACTCAACT 252535 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | |||||||| || | ||| || || ||||||||||| Sbjct 252536 TCCAAAGTGATAGTTTTACCGGTTAAAGTCTTGACGAAAATCTGCAT 252582 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 ||||| || | ||| | || || || | | | ||||||||||| || |||||||| Sbjct 252812 CCGCCGCGGAGACGAAGGACCAAGTGAAGGGTAGACTCCTTTTGGATATTGTAGTCAGAG 252871 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||||| || || || ||||| |||| |||| || ||||| ||||| || || Sbjct 252872 AGCGTACGACCATCTTCAAGCTGTTTTCCGGCGAAGATGAGGCGCTGCTGGTCTGGGGGA 252931 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 |||||||| ||||| || || || || | | || | |||||||| ||||| || Sbjct 252932 ATACCTTCCTTGTCCTGAATCTTCTGCTTGACGTTATCGATGGTGTCGGAGGACTCAACT 252991 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | |||||||| || | ||| || || ||||||||||| Sbjct 252992 TCCAAAGTGATAGTTTTACCGGTTAAAGTCTTGACGAAAATCTGCAT 253038 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| || || | ||| | || || || | | | ||||||||||| || |||||||| Sbjct 252127 GCCACCACGAAGACGAAGGACCAAGTGAAGGGTAGACTCCTTTTGGATATTGTAGTCAGA 252186 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 | || || ||||| || ||||| |||| | || |||||||| ||||| ||||| Sbjct 252187 GAGCGTGCGACCATCCTCAAGCTGTTTTCCGGCGAAAATAAGACGCTGCTGGTCTGGAGG 252246 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 |||||||| ||||| || || || || | | || | |||||||| ||||| || Sbjct 252247 AATACCTTCCTTGTCCTGAATCTTCTGCTTGACGTTGTCGATGGTGTCGGAAGACTCAAC 252306 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | || || ||||| || || || || ||||||||||| Sbjct 252307 TTCCAAAGTGATTGTCTTGCCAGTGAGTGTCTTGACGAAAATCTGCAT 252354 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 ||||| || | ||| | ||||| || | | | || ||||| ||||| || ||||| Sbjct 252584 CCGCCGCGAAGACGAAGAACTAGGTGGAGGGTGGATTCCTTCTGAATATTATAGTCAGAG 252643 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || ||||| || ||||| |||| | || |||||||| ||||| ||||| Sbjct 252644 AGCGTGCGGCCATCCTCAAGCTGTTTTCCGGCGAAAATAAGACGCTGCTGGTCTGGAGGA 252703 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 |||||||| ||||| || || || || | | || | |||||||| ||||| || Sbjct 252704 ATACCTTCCTTGTCCTGAATCTTCTGCTTGACGTTGTCGATGGTGTCGGAAGACTCAACT 252763 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | || || ||||| || || || || ||||||||||| Sbjct 252764 TCCAAAGTGATTGTCTTGCCAGTGAGTGTCTTGACGAAAATCTGCAT 252810 >seq84 Length=1068272 Score = 111 bits (122), Expect = 2e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | |||||| || ||||| | | |||||||| || ||||| ||||| Sbjct 721126 CCACCACGGAGACGCAAGACCAAATGAAGAGTAGACTCCTTCTGGATGTTATAGTCAGAA 721067 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||||| ||||| || || || |||| | |||| |||||||| ||||| || || Sbjct 721066 AGGGTACGGCCATCCTCAAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCTGGGGGA 721007 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGTTCCACGGTGTCGGTCGACTCCAC 138566 ||||| |||||||| ||| || || || | ||||| | | ||| || | ||||| || Sbjct 721006 ATACCCTCTTTGTCTTGGATCTTCTGCTTGACATTGT-CAATGGTATCAGAGGACTCGAC 720948 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||||| || | || || || |||| || || || ||||||||||| Sbjct 720947 CTCGAGGGTGATGGTCTTGCCGGTCAAGGTCTTGACGAAAATCTGCAT 720900 Score = 86.0 bits (94), Expect = 6e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| || || | ||||| || ||||| | | | |||||||| |||||||| ||||| Sbjct 721583 GCCACCGCGAAGGCGCAATACCAAATGAAGGGTGGACTCCTTCTGAATGTTATAGTCAGA 721524 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 | ||||| ||||| || || || || | | | || || ||||| ||||| || || Sbjct 721523 AAGGGTACGGCCATCCTCAAGCTGCTTGCCAGCAAAAATGAGGCGCTGCTGGTCTGGGGG 721464 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGTTCCACGGTGTCGGTCGACTCCA 138565 ||||| || || || ||| || || || | ||||| | | ||| || | || || | Sbjct 721463 AATACCCTCCTTATCTTGGATCTTCTGCTTGACATTGT-CAATGGTATCAGAGGATTCGA 721405 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||| | || | || || || |||| || || || ||||||||||| Sbjct 721404 CCTCAAGGGTGATGGTCTTGCCGGTCAAGGTCTTGACGAAAATCTGCAT 721356 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496261543947360