Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lobosporangium_20transversale_20[genbank_20GCA_5F002105155.1_202017- 04-20] 138 sequences; 42,768,949 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq84 127 2e-24 seq53 116 4e-21 seq78 91.5 2e-13 seq62 91.5 2e-13 >seq84 Length=1068272 Score = 127 bits (140), Expect = 2e-24 Identities = 160/217 (74%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 |||||| |||| ||| | ||| |||||| ||||| || ||||| || ||||| || | Sbjct 720887 ACGCAAGACCAAATGAAGGGTAGACTCCTTCTGGATGTTATAGTCAGAGAGAGTACGGCC 720828 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 || || |||||||| ||||| || || | ||||||||||| | || | | |||||| Sbjct 720827 ATCCTCAAGCTGCTTACCGGCAAAGATGAGACGCTGCTGGTCTGGGGGAATACCCTCCTT 720768 Query 46498 GTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCCACCGTGA 46556 ||| |||||||| ||||| ||| | | | |||||| || || || || | |||| Sbjct 720767 GTCTTGGATCTTCTGCTTGA-CGTTGTCAATGGTGTCGGAGGACTCGACCTCAAGGGTGA 720709 Query 46557 TGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 |||| ||||| || || || ||||| ||||| ||||| Sbjct 720708 TGGTCTTGCCGGTGAGAGTCTTAACGAAGATCTGCAT 720672 Score = 104 bits (114), Expect = 3e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438 |||| ||||| || | || |||||| ||||| ||||| ||||| || || || | Sbjct 721342 CGCAGCACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAATCGGAGAGGGTACGGCCA 721283 Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 46498 || || | ||||||||||||||| || | |||||||||||| | || | || ||||| Sbjct 721282 TCTTCCAACTGCTTGCCGGCGAAAATGAGGCGCTGCTGGTCTGGAGGAATGCCTTCCTTA 721223 Query 46499 TCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATG 46558 || ||||||| ||||| | | | |||||| || || || || | |||||| Sbjct 721222 TCTTGAATCTTCTGCTTGACGTTATCGATCGTGTCAGAGGACTCGACCTCAAGGGTGATG 721163 Query 46559 GTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || ||||| |||| || || || || || ||||| Sbjct 721162 GTCTTGCCGGTCAAGGTCTTGACGAAAATCTGCAT 721128 Score = 102 bits (112), Expect = 9e-17 Identities = 152/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 |||||| |||| ||| | ||| |||||| ||||| || ||||| || || || || | Sbjct 721115 ACGCAAGACCAAATGAAGAGTAGACTCCTTCTGGATGTTATAGTCAGAAAGGGTACGGCC 721056 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 || || |||||||||||||| || || | ||||||||||| | || | | ||| || Sbjct 721055 ATCCTCAAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCTGGGGGAATACCCTCTTT 720996 Query 46498 GTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGAT 46557 ||| |||||||| ||||| | | | || || || || || || | ||||| Sbjct 720995 GTCTTGGATCTTCTGCTTGACATTGTCAATGGTATCAGAGGACTCGACCTCGAGGGTGAT 720936 Query 46558 GGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||| ||||| |||| || || || || || ||||| Sbjct 720935 GGTCTTGCCGGTCAAGGTCTTGACGAAAATCTGCAT 720900 Score = 95.1 bits (104), Expect = 1e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438 ||||| |||| ||| | || |||||| || || || ||||| || || || || | Sbjct 721570 CGCAATACCAAATGAAGGGTGGACTCCTTCTGAATGTTATAGTCAGAAAGGGTACGGCCA 721511 Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 46498 || || ||||||||||| || || || | |||||||||||| | || | | |||||| Sbjct 721510 TCCTCAAGCTGCTTGCCAGCAAAAATGAGGCGCTGCTGGTCTGGGGGAATACCCTCCTTA 721451 Query 46499 TCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATG 46558 || |||||||| ||||| | | | || || ||||| || || | |||||| Sbjct 721450 TCTTGGATCTTCTGCTTGACATTGTCAATGGTATCAGAGGATTCGACCTCAAGGGTGATG 721391 Query 46559 GTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || ||||| |||| || || || || || ||||| Sbjct 721390 GTCTTGCCGGTCAAGGTCTTGACGAAAATCTGCAT 721356 >seq53 Length=681236 Score = 116 bits (128), Expect = 4e-21 Identities = 169/236 (72%), Gaps = 2/236 (1%) Strand=Plus/Plus Query 46359 ATTATTTGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGT 46418 |||| | ||| || | | ||| | |||| || | ||| ||||||||||||||||| Sbjct 252120 ATTACTGGCCACCACGAAGACGAAGGACCAAGTGAAGGGTAGACTCCTTTTGGATATTGT 252179 Query 46419 AGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGT 46478 |||| || || ||||| | || || ||||| || |||||||| || | |||||||||| Sbjct 252180 AGTCAGAGAGCGTGCGACCATCCTCAAGCTGTTTTCCGGCGAAAATAAGACGCTGCTGGT 252239 Query 46479 CGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTC 46537 | | || | | ||||||||| ||||||| ||||| ||| | | | |||||| Sbjct 252240 CTGGAGGAATACCTTCCTTGTCCTGAATCTTCTGCTTGA-CGTTGTCGATGGTGTCGGAA 252298 Query 46538 GATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || || || |||| ||||| || ||||| || || || || || || || ||||| Sbjct 252299 GACTCAACTTCCAAAGTGATTGTCTTGCCAGTGAGTGTCTTGACGAAAATCTGCAT 252354 Score = 107 bits (118), Expect = 2e-18 Identities = 139/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 ||||||||||||||||||||| || || || || | || || ||||| || |||||||| Sbjct 252391 CTCCTTTTGGATATTGTAGTCAGAGAGCGTACGACCATCTTCAAGCTGTTTTCCGGCGAA 252450 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | |||||||||||| | || | | ||||||||| ||||||| ||||| | Sbjct 252451 GATGAGGCGCTGCTGGTCTGGGGGAATACCTTCCTTGTCCTGAATCTTCTGCTTGACGTT 252510 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | |||||| || || || |||| ||||| ||||| || || | || || || Sbjct 252511 ATCGATGGTGTCGGAGGACTCAACTTCCAAAGTGATAGTTTTACCGGTTAAAGTCTTGAC 252570 Query 46582 AAAGATTTGCAT 46593 || || ||||| Sbjct 252571 GAAAATCTGCAT 252582 Score = 107 bits (118), Expect = 2e-18 Identities = 139/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 ||||||||||||||||||||| || || || || | || || ||||| || |||||||| Sbjct 252847 CTCCTTTTGGATATTGTAGTCAGAGAGCGTACGACCATCTTCAAGCTGTTTTCCGGCGAA 252906 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | |||||||||||| | || | | ||||||||| ||||||| ||||| | Sbjct 252907 GATGAGGCGCTGCTGGTCTGGGGGAATACCTTCCTTGTCCTGAATCTTCTGCTTGACGTT 252966 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | |||||| || || || |||| ||||| ||||| || || | || || || Sbjct 252967 ATCGATGGTGTCGGAGGACTCAACTTCCAAAGTGATAGTTTTACCGGTTAAAGTCTTGAC 253026 Query 46582 AAAGATTTGCAT 46593 || || ||||| Sbjct 253027 GAAAATCTGCAT 253038 Score = 100 bits (110), Expect = 3e-16 Identities = 139/192 (72%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||| || ||||| ||||| || || ||||| | || || ||||| || |||||||| Sbjct 252620 TCCTTCTGAATATTATAGTCAGAGAGCGTGCGGCCATCCTCAAGCTGTTTTCCGGCGAAA 252679 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 || | ||||||||||| | || | | ||||||||| ||||||| ||||| ||| Sbjct 252680 ATAAGACGCTGCTGGTCTGGAGGAATACCTTCCTTGTCCTGAATCTTCTGCTTGA-CGTT 252738 Query 46523 G-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | | |||||| || || || |||| ||||| || ||||| || || || || || Sbjct 252739 GTCGATGGTGTCGGAAGACTCAACTTCCAAAGTGATTGTCTTGCCAGTGAGTGTCTTGAC 252798 Query 46582 AAAGATTTGCAT 46593 || || ||||| Sbjct 252799 GAAAATCTGCAT 252810 Score = 91.5 bits (100), Expect = 2e-13 Identities = 137/195 (70%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 ||||||||| ||||| || ||||| || || || | || || || ||||| || || || Sbjct 253075 CTCCTTTTGAATATTATAATCGGAAAGCGTACGTCCATCTTCAAGTTGCTTTCCAGCAAA 253134 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | ||||||||||| | || | | ||||||||| ||| |||| || | | Sbjct 253135 GATGAGACGCTGCTGGTCTGGAGGAATACCTTCCTTGTCCTGGATTTTCTGTTTAACATT 253194 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | |||||| || || || |||| || ||||| ||||| || || || || || Sbjct 253195 GTCGATAGTGTCGGAGGACTCTACCTCCAAAGTAATGGTCTTGCCGGTGAGTGTCTTGAC 253254 Query 46582 AAAGATTTGCATTTT 46596 ||| || |||||||| Sbjct 253255 AAAAATCTGCATTTT 253269 >seq78 Length=372185 Score = 91.5 bits (100), Expect = 2e-13 Identities = 77/95 (81%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444 |||| |||||| || |||||||||||| |||||||| || ||||| || | || || Sbjct 198855 ACCAAATGCAAGGTTGACTCCTTTTGGATGTTGTAGTCAGAAAGAGTACGACCATCCTCA 198796 Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTC 46479 |||||||| || ||||| ||||| ||||||||||| Sbjct 198795 AGCTGCTTACCAGCGAAGATCAAACGCTGCTGGTC 198761 >seq62 Length=1732855 Score = 91.5 bits (100), Expect = 2e-13 Identities = 77/95 (81%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444 |||| ||||| || |||||| || || ||||||||||| | |||||| | || ||| Sbjct 1320888 ACCAAGTGCAAGGTCGACTCCTTCTGAATGTTGTAGTCGGACAAAGTGCGACCATCCTCG 1320947 Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTC 46479 |||||||||||||| || ||||| ||||||||||| Sbjct 1320948 AGCTGCTTGCCGGCAAAAATCAAACGCTGCTGGTC 1320982 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565237424963760