Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lobosporangium_20transversale_20[genbank_20GCA_5F002105155.1_202017- 04-20] 138 sequences; 42,768,949 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq53 100 2e-16 >seq53 Length=681236 Score = 100 bits (110), Expect = 2e-16 Identities = 172/246 (70%), Gaps = 8/246 (3%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || || | ||| || ||||| || | || || ||||| ||||||||||||| Sbjct 253040 CCTCCACGGAGACGGAGGACCAAGTGAAGGGTCGACTCCTTTTGAATATTATAATCGG-- 253097 Query 39553 AAAACG--CGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGG 39610 ||| || ||| |||| || | ||| || || |||| || | ||||||||| || | | Sbjct 253098 AAAGCGTACGTCCATCTTCAAGTTGCTTTCCAGCAAAGATGAGACGCTGCTGGTCTGGAG 253157 Query 39611 GTACGCCTTCTTTGTCGCATATTTTTTGTTTA--ATCGTCGCTACTGTGTCTGCGCTTTC 39668 | | ||||| ||||| ||||| |||||| || |||| || ||||| | | || Sbjct 253158 GAATACCTTCCTTGTCCTGGATTTTCTGTTTAACATTGTCGATA--GTGTCGGAGGACTC 253215 Query 39669 CACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATGTCGTGTGT 39728 || ||||||||||| || || || || | || || || || |||||||| | ||| | Sbjct 253216 TACCTCCAAAGTAATGGTCTTGCCGGTGAGTGTCTTGACAAAAATCTGCATTTTATGTAT 253275 Query 39729 TTCGTT 39734 || ||| Sbjct 253276 TTTGTT 253281 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347369015767754