Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lobosporangium_20transversale_20[genbank_20GCA_5F002105155.1_202017- 04-20] 138 sequences; 42,768,949 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq84 123 2e-23 seq53 114 1e-20 seq57 96.9 3e-15 >seq84 Length=1068272 Score = 123 bits (136), Expect = 2e-23 Identities = 157/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || | || ||||| ||||||||| |||| |||||| || | Sbjct 720900 ATGCAGATTTTCGTCAAGACCTTGACCGGCAAGACCATCACCCTCGAGGTCGAGTCCTCT 720959 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | | | | | || | || |||| ||||||||||| |||||| | ||||| Sbjct 720960 GATACCATTGACAATGTCAAGCAGAAGATCCAAGACAAAGAGGGTATTCCCCCAGACCAG 721019 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| ||||| | || ||||| ||||| || || | || ||||| ||||| ||| Sbjct 721020 CAGCGTCTCATCTTTGCCGGCAAGCAGCTTGAGGATGGCCGTACCCTTTCTGACTATAAC 721079 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||||| ||||| | || || |||||||| ||||| Sbjct 721080 ATCCAGAAGGAGTCTACTCTTCATTTGGTCTTGCGT 721115 Score = 122 bits (134), Expect = 9e-23 Identities = 158/216 (73%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || | || ||||| ||||||||| | || |||||| || | Sbjct 721128 ATGCAGATTTTCGTCAAGACCTTGACCGGCAAGACCATCACCCTTGAGGTCGAGTCCTCT 721187 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | |||| | || | || || | || || || || ||||| | ||||| Sbjct 721188 GACACGATCGATAACG-TCAAGCAGAAGATTCAAGATAAGGAAGGCATTCCTCCAGACCA 721246 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| ||||||| ||| ||||| ||| |||| || | || |||||| ||| ||||| Sbjct 721247 GCAGCGCCTCATTTTCGCCGGCAAGCAGTTGGAAGATGGCCGTACCCTCTCCGATTACAA 721306 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 |||||| ||||| | || || || ||||||||||| Sbjct 721307 CATCCAGAAGGAGTCCACTCTCCACTTGGTGCTGCG 721342 >seq53 Length=681236 Score = 114 bits (126), Expect = 1e-20 Identities = 165/230 (72%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || ||||| ||||| || ||||| | || || ||| | || Sbjct 252354 ATGCAGATTTTCGTCAAGACACTCACTGGCAAGACAATCACTTTGGAAGTTGAGTCTTCC 252295 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | || || | ||||| || || ||||| | ||||| Sbjct 252294 GACACCATCGACAACG-TCAAGCAGAAGATTCAGGACAAGGAAGGTATTCCTCCAGACCA 252236 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| || |||| ||| || |||||||| || || | ||||| ||| |||||||| Sbjct 252235 GCAGCGTCTTATTTTCGCCGGAAAACAGCTTGAGGATGGTCGCACGCTCTCTGACTACAA 252176 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGCC 38472 ||||||||||| | || || || ||||| || ||| | | || |||| Sbjct 252175 TATCCAAAAGGAGTCTACCCTTCACTTGGTCCTTCGTCTTCGTGGTGGCC 252126 Score = 111 bits (122), Expect = 2e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || | || || ||||| ||||| | || || ||| || || Sbjct 252582 ATGCAGATTTTCGTCAAGACTTTAACCGGTAAAACTATCACTTTGGAAGTTGAGTCCTCC 252523 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | || || | ||||| || || |||||| | ||||| Sbjct 252522 GACACCATCGATAACG-TCAAGCAGAAGATTCAGGACAAGGAAGGTATTCCCCCAGACCA 252464 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| ||||| | ||| || |||||||| || || | || || ||| |||||||| Sbjct 252463 GCAGCGCCTCATCTTCGCCGGAAAACAGCTTGAAGATGGTCGTACGCTCTCTGACTACAA 252404 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||||||||| | || || || ||||| || ||| | | ||||| Sbjct 252403 TATCCAAAAGGAGTCTACCCTTCACTTGGTCCTTCGTCTCCGCGGCGG 252356 Score = 111 bits (122), Expect = 2e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || | || || ||||| ||||| | || || ||| || || Sbjct 253038 ATGCAGATTTTCGTCAAGACTTTAACCGGTAAAACTATCACTTTGGAAGTTGAGTCCTCC 252979 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | || || | ||||| || || |||||| | ||||| Sbjct 252978 GACACCATCGATAACG-TCAAGCAGAAGATTCAGGACAAGGAAGGTATTCCCCCAGACCA 252920 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| ||||| | ||| || |||||||| || || | || || ||| |||||||| Sbjct 252919 GCAGCGCCTCATCTTCGCCGGAAAACAGCTTGAAGATGGTCGTACGCTCTCTGACTACAA 252860 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||||||||| | || || || ||||| || ||| | | ||||| Sbjct 252859 TATCCAAAAGGAGTCTACCCTTCACTTGGTCCTTCGTCTCCGCGGCGG 252812 >seq57 Length=574579 Score = 96.9 bits (106), Expect = 3e-15 Identities = 116/158 (73%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 132885 GAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCT 132944 ||||| ||||| || || || || | ||||| || | || |||||||||||| Sbjct 521088 GAACAATAAGCAGGCGAAATCAGTGTGGAGACCCTCATCACGCGAGATGAGTTCGTTGGA 521029 Query 132945 GAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCC 133004 ||| |||| || |||||||| || || |||||||||||||| |||| ||||| ||| Sbjct 521028 GAAGGTCAGACCAGGCATGAGACCACGCTTTTTGAGCCAAAAGATGGAAGCGAATGCGCC 520969 Query 133005 CGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCA 133042 || ||||||| ||| || || || || || || |||| Sbjct 520968 AGAGAAGAAGATGCCTTCAACAGCAGCAAAGGCGACCA 520931 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500171937201920