Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lobosporangium_20transversale_20[genbank_20GCA_5F002105155.1_202017- 04-20] 138 sequences; 42,768,949 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq49 255 7e-63 seq57 145 9e-30 seq117 87.8 2e-12 seq1 82.4 9e-11 >seq49 Length=746914 Score = 255 bits (282), Expect = 7e-63 Identities = 1141/1769 (64%), Gaps = 100/1769 (6%) Strand=Plus/Plus Query 111621 ATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGATTCTGTTTTGGAGACA 111680 ||| ||||||| || || | || |||||||| || ||||| || | | || || Sbjct 373062 ATGCTCATGCGTGTTGCTGTTGGGATCCATGGTGAGGATATCGACAAGGCCATTGAAACT 373121 Query 111681 TACGACAAGATGTCCCGTGG----TATGTTCATCCACGCAACACCAACCCTCTTCAACGC 111736 || || | ||||| || ||| || | || ||| | || | ||| || || || Sbjct 373122 TATAACTACATGTC---TGAAAAATATTTT-ACGCATGCATCTCCGATCCTGTTTAATGC 373177 Query 111737 TGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGAGGATTCAAT 111796 ||| || ||||| || |||||||| ||||||||||| | | | ||||| || || || Sbjct 373178 TGGGACCCCAAGGCCTCAAATGTCAAGTTGTTTCCTCTTGACTATGAAGGATGACTCGAT 373237 Query 111797 CAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGCTGGTGGTAT 111856 | | || ||||||| || |||| |||||| ||||| ||| |||||||| || Sbjct 373238 CGAAGGAATTTACGATACCCTCAAGTCTTGTGCCATGATCTCCAAGACTGCTGGTGGGAT 373297 Query 111857 CGGGATGCACATCCATGATGTCAGAGCCAACAAGT-CTCGTATTAGAGGTACAAATGGTC 111915 || | | ||||| | || ||||| || || | |||| ||||| ||||||| Sbjct 373298 TGGCCTTAATGTCCATAACATCCGAGCCT-CAGGTTCATATATTGCTGGTACGAATGGTC 373356 Query 111916 AATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGTAAACC 111975 | || | || | || || ||| | | ||||||||| || ||| | |||||| | | Sbjct 373357 ATTCTAACGGATTGATCCCTATGTTGAGGGTATTTAACAATACCGCGAGATATGTAGATC 373416 Query 111976 AAGCTGG------GCGTCGCAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCACGCGG 112029 ||| ||| ||| | || ||| | | || | ||| | || || ||||| |||| Sbjct 373417 AAGGTGGAAACAAGCGGC-CA--GGAGCCTTTGCCATGTATTTGGAACCTTGGCATGCGG 373473 Query 112030 ATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGGCGCGGTGC-CGC 112088 | | | || || | || | || || ||| | || ||| | || ||| || Sbjct 373474 ACGTGTTTGATTTTTTGGACCTTCGCAAGAATACAGGCAAGGAAGAGACTCG-TGCTCGA 373532 Query 112089 GATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAGTGGC 112148 || | ||| | |||||||| || || || |||||||| || |||| ||| |||| Sbjct 373533 GACTTGTTCCTGGGACTCTGGATCCCTGACCTGTTCATGAAACGAATTGAACAGAATGGC 373592 Query 112149 AATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGATGCCGTGGGTGAGGAG 112208 ||||| |||||||||||| | |||| || ||||| |||| | ||| || ||| Sbjct 373593 GATTGGAGTCTCTTTTGTCCTGCTGAGGCGCCTGGTCTACAAGATGTCTGGGGCGAAGAG 373652 Query 112209 TTTGAAGCCCTCTACACAAAGTACGAGGAAGAAAGTCGGGCGACTGCGACGGTGCCAGCT 112268 ||||| ||||| | | |||||| ||| | ||||| | ||| | ||| Sbjct 373653 TTTGAGAAACTCTATATGACCTACGAGCTGGAAGGACGGGCTCGTAAGACTATCAAGGCT 373712 Query 112269 GCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATATATGCT 112327 | || | ||||| || || || || ||||||| |||||||| || || |||||||| Sbjct 373713 -CAGAAGCTGTGGTTCGCAATCCTGGAGGCTCAAACAGAGACTGGAACGCCCTATATGCT 373771 Query 112328 TTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAGAGTTC 112387 ||| ||||| |||||||||| ||| |||||| |||| ||||| |||||| || Sbjct 373772 TTATAAAGATGCCTGTAACCGCAAGTCGAATCAACAGAACTTGGGGACTATCAAGTGTAG 373831 Query 112388 CAACCTCTGTACAGAAATCTTGGAATTTA-CAGACAAAGATGAGACGGCTGTGTGTAACC 112446 || ||||||||||| ||| | |||| | ||| | |||||| ||||| |||||| Sbjct 373832 TAATCTCTGTACAGAGATCATCGAATACAGCAG-CCCTGATGAGGTCGCTGTCTGTAACT 373890 Query 112447 TCGCATCAATCGCTCTCCCCAAGTATGT--GGATCCAGAGACAAAGAC--------ATTT 112496 | || || ||||| || | | ||| || | | ||||| | | |||| Sbjct 373891 TGGCCAGTATTGCTCTTCCTACCTTTGTCATGA-CTGGTGACAATGGCATTCCAGTATTT 373949 Query 112497 GATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACAAAAAACCTAAACAGAGTTATT 112556 |||| | | |||||| | | || ||| || || ||||| || | |||||| Sbjct 373950 GATTTCAAGATGCTCCACAAGATCACTAAAGTCGTAACTCGGAACCTGAATAAGGTTATT 374009 Query 112557 GATAGAAATTTTTACCCCGT---TGAGACTGCTCGTAAA-TCTAATATGAGACACCGTCC 112612 |||||||| | |||||| || |||| | || ||| || || | | || ||||| Sbjct 374010 GATAGAAACTATTACCCAGTTCCTGAGGC----CGAAAAGTCCAACAAACGTCATCGTCC 374065 Query 112613 AATTGGTCTCGGTGTCCAAGGTCTCGCGGATGTATTCATTCTTTGTCGCCACG-CATTTG 112671 |||||| | || ||||| || || || || | || ||| | || | | |||| Sbjct 374066 AATTGGATTGGGAGTCCAGGGCCTAGCAGACGCCTT-TTTCAAAATGCACATGCCCTTTG 374124 Query 112672 ATTCCGACGAAGCGAAGGAAATCAATGCGCGT----ATATTTGAGACAATGTATCACGCC 112727 | || ||||| | |||| || ||| || |||||||| || ||||| || Sbjct 374125 ACTCGCTTGAAGC-CCGCAAAT---TGAACGTCTTGATTTTTGAGACCATCTATCATGCT 374180 Query 112728 GCTCTTGAGGCGAGTTCGGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGT 112787 || || || || || ||| | || | | || ||| || | |||| | || Sbjct 374181 GCACTCGAAGCATCTTGTGAGCTTGCTCAAGAAGAGGGTGTCTACGTGACCTATCCAGGG 374240 Query 112788 TCTCCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAGCT--TC 112845 ||||||| || | || | || ||| || ||||||| ||| | |||| || || Sbjct 374241 TCTCCAGTGTCTAAGGGTATTCTGCAACCAGACATGTGGG-GGGTCACTCCAA-CTGATC 374298 Query 112846 ACTACGACTGGGACGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAAC-AGTCTT 112904 || ||||||||| | || || ||| | || | || | || ||| || Sbjct 374299 TCTGGGACTGGGACACCCTTCGTGACAACATTTCGAAGCATGGCGTCCGGAACTCGTTGC 374358 Query 112905 TTGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTT 112964 ||| | || || ||||| ||||| ||||| | || ||||||||||| |||||||| ||| Sbjct 374359 TTG-TAGCTCCCATGCCCACAGCGTCCACATCCCAGATCTTGGGTAACAATGAATGTTTT 374417 Query 112965 GAACCCTACACGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTC 113024 || || || || | ||||||| | ||| | |||||||| || || |||||| Sbjct 374418 GAGCCTTATACTTCCAACATCTTTACAAGACGCGTTCTCGCGGGTGAATTCCAGATTGTG 374477 Query 113025 AACAAGCATCTCGTGGATGACCTCAAAGAGAT---------TGGTCTCTGGTCCAAGGAT 113075 || | | |||||| |||||||| || |||||| ||| || | | Sbjct 374478 AA-------CCCTTGGATG--CTCAAAGATATGGTCGATCGTGGTCTATGGACCGATTCT 374528 Query 113076 ATGAAGGATC---TCATGGTGAAAGCGGGTGGTTCCATTCAAAATAT-TGTGGATATTCC 113131 | ||| | | |||| | | | | ||| || || |||||||| | ||| |||| Sbjct 374529 CTAAAGAACCGGATCATTGCG---GAGAATGGCTCTATCCAAAATATCTCTGG-GGTTCC 374584 Query 113132 AGATGAAATTAAGAAG--TTGTACCGCACAGTTTGGGAAATCAAGATGAAGGATGTCATT 113189 ||||| ||| | ||| |||||| || ||||||||| |||| ||||| Sbjct 374585 AGATG--ATTTAAAAGCCTTGTACAAGACCACGTGGGAAATCTCTCAAAAGGTCATCATT 374642 Query 113190 GACATGGCCGCAGATCGTGGTCGCTTCATTGATCAAAGTCAAAGTATGAATCTATTCATG 113249 |||||||| || |||||||| || || |||||| |||| | || |||||| Sbjct 374643 GACATGGCAGCGGATCGTGGGGCCTATATCGATCAATCTCAATCGCTAAA--CATTCAT- 374699 Query 113250 GAAAGTCCAACG---ATGTC--CAAGCTCTCTTCTATGCACATGTACAGTTGGAAGAAGG 113304 | ||| ||| | || ||||| | |||| | || | |||||||||| Sbjct 374700 --ATGTCGGACGTAAACTTCGGAAAGCTGACAAGTATGGCGTTTTATGGATGGAAGAAGG 374757 Query 113305 GTCTCAAAACGGGGATGTATTACCTCCGA 113333 |||| || || |||||||||||||| ||| Sbjct 374758 GTCTAAAGACCGGGATGTATTACCTACGA 374786 >seq57 Length=574579 Score = 145 bits (160), Expect = 9e-30 Identities = 161/212 (76%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 102110 AGTTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGAT-ACAAAGTCGC 102168 |||||| || |||| ||||| || | ||||| ||||||||| || | || | | ||| Sbjct 520854 AGTTCCTTGCATTCGCAAGAAGGCTGCCTGGGCCATGAAGTGGATTTCTGACCAGGACGC 520913 Query 102169 GTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTT 102228 |||||||||| || | |||| ||||| |||||| || |||||||||||||| Sbjct 520914 AA-CCTTTGCTGAACGTTTGGTCGCCTTTGCTGCTGTTGAAGGCATCTTCTTCTCTGGCG 520972 Query 102229 CCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCA 102288 | ||| | || | ||||||||| ||||| ||||||||||| ||||| |||||||| Sbjct 520973 CATTCGCTTCCATCTTTTGGCTCAAAAAGCGTGGTCTCATGCCTGGTCTGACCTTCTCCA 521032 Query 102289 ACGAGCTTATCTCTCGTGACGAGGGACTCCAC 102320 |||| || ||||| ||||| ||||| |||||| Sbjct 521033 ACGAACTCATCTCGCGTGATGAGGGTCTCCAC 521064 >seq117 Length=942176 Score = 87.8 bits (96), Expect = 2e-12 Identities = 177/260 (68%), Gaps = 2/260 (1%) Strand=Plus/Minus Query 13722 AATTACCGCGAGTCTTACGGACTGTTTGCATGCTCCGGAATCCTCTTCAACCATGAATCA 13781 || ||||| ||| | ||| ||| ||| ||| ||| ||||| |||||||| || || Sbjct 192742 AACTACCGTGAGGCCTACAACATGTATGCTTGCAACGGTATCCTTTTCAACCACGAGTCT 192683 Query 13782 CCGAGACGAGGT-GCAGACTTTGTGACCATGAAGATTACCGAGGGTATCAAACAAATCAT 13840 || | || ||| ||| |||||||||| ||||| ||| | | || | ||||| Sbjct 192682 CCTCGCCGCGGTCGCAC-CTTTGTGACCCGTAAGATCACCTGCGCTGTCGCATCAATCAA 192624 Query 13841 GAAGGGTGAAAAGGAGTTCATTGAATTGGGTAACATAAACGCGGAGAGAGATTGGGGTCA 13900 | ||| || | |||| | | | | |||||| | ||||| || | || ||||| || Sbjct 192623 GTTGGGCAAACAAGAGTGCCTCTACCTCGGTAACTTGGACGCGAAGCGTGACTGGGGCCA 192564 Query 13901 CGCGAAGGACTATGTTGAAGCTATGTGGCTCATGCTTCAACAAGAGGAAGCCGACGAATA 13960 || || || || || | ||||||| ||||||||||| || | ||||| || | Sbjct 192563 TGCTCGCGATTACGTCGAGGGTATGTGGAGGATGCTTCAACAGGAAAAGGCCGAGGACTT 192504 Query 13961 TGTAGTAGCAACGGGTGAGA 13980 ||| | |||||||| |||| Sbjct 192503 TGTCCTGGCAACGGGAGAGA 192484 >seq1 Length=1854208 Score = 82.4 bits (90), Expect = 9e-11 Identities = 143/204 (70%), Gaps = 13/204 (6%) Strand=Plus/Plus Query 15973 CAAAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTG 16032 |||| |||||||| || |||||||||||| | || || ||||||||||| || | Sbjct 338255 CAAATCCATCCATTTCCACCAAAAGCTGGTTCAATGTACTCTCACGTTCATCATT-GCCG 338313 Query 16033 GCATA----CCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACG 16088 || | || || || || |||||| | |||||||| ||||| || |||| Sbjct 338314 CCAAAATGGCCTCCTTTACCTCGAGCCTTTCCGATAGCATCAATTTCATCTATAAAGATA 338373 Query 16089 ATGCATGGT---TGATT-TTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCC 16144 || || ||| || || || ||| || |||| | ||| || || || ||| || Sbjct 338374 ATACAAGGTGCATGCTTCTTGGCGCTCG----CAAACAAATCACGAACGCGTGAGGCTCC 338429 Query 16145 CACACCAACAAACATCTCCACAAA 16168 |||||||||||||||||||||||| Sbjct 338430 CACACCAACAAACATCTCCACAAA 338453 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620741329219360