Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lobosporangium_20transversale_20[genbank_20GCA_5F002105155.1_202017- 04-20] 138 sequences; 42,768,949 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq49 201 1e-46 seq47 185 1e-41 seq57 102 1e-16 >seq49 Length=746914 Score = 201 bits (222), Expect = 1e-46 Identities = 1120/1762 (64%), Gaps = 74/1762 (4%) Strand=Plus/Minus Query 109500 GTTCATCGACTGAGACTGATCGATGAATCGACCACGATCAGCCGCCATGTCGATGATACA 109559 ||| | ||| ||||| |||||||| | |||||||| || |||||||| ||||| Sbjct 374693 GTTTAGCGATTGAGATTGATCGATATAGGCCCCACGATCCGCTGCCATGTCAATGATGAC 374634 Query 109560 CTTTTGGCTAATTTCCCAGACAGTCTTGTACAAATTCTTGATATCATCGGGAATGTCCAC 109619 |||||| |||||||| ||||||||||| || | |||||| |||| | Sbjct 374633 CTTTTGAGAGATTTCCCACGTGGTCTTGTACAAGGCTTTTAAATCATCTGGAACCCCAGA 374574 Query 109620 GATGTTTTGAATAGAGCCACCAGCCTTCACCATGA----GATCCTTC----ATC--TCTT 109669 ||| ||||| ||||||||| || | | |||| | || || ||| || Sbjct 374573 GATATTTTGGATAGAGCCATT---CTCCGCAATGATCCGGTTCTTTAGAGAATCGGTCCA 374517 Query 109670 TCGACCAGAGACCGACCTT---TTTGAGATCGTCAACAAGATGCTTGTTGACCACGACAA 109726 | ||||| || ||||| | |||||| | || |||| ||| || | | Sbjct 374516 TAGACCAC-GATCGACCATATCTTTGAG--CATC--CAAGG-----GTTCACAATCTGGA 374467 Query 109727 ATTCACCAGCAAGTGTGCGTCGGAGGTAGATGTTAGTCGTGTAGGGTTCGAAACACTCAT 109786 ||||||| || || ||||| ||||||| | || || || || ||||| |||| Sbjct 374466 ATTCACCCGCGAGAACGCGTCTTGTAAAGATGTTGGAAGTATAAGGCTCAAAACATTCAT 374407 Query 109787 TGTTGCCTAGGATTTGTGCAGTGGAAGCTGTGGGCATGGGAGCCATGAGAAGACTGTTTC 109846 |||| || | ||| || | ||||| ||||||||||||||||| | || | ||| | Sbjct 374406 TGTTACCCAAGATCTGGGATGTGGACGCTGTGGGCATGGGAGCTACAAGCAACGAGTTCC 374347 Query 109847 GGAGACCCTTCGTCTTTACCCGCTCACGCATTGCGTCCCAATCATAACGACCACTAAATT 109906 ||| || | | || | ||||| | | |||||| || | || || | Sbjct 374346 GGACGCCATGCTTCGAAATGTTGTCACGAAGGGTGTCCCAGTCCCAGAGATCAGT----- 374292 Query 109907 TAGTCTCACCATCCCACATATCTGGTTGAAGTACACCCTCAGCAGCAGGAGAACCCTTGA 109966 | | | ||| ||||||| |||||||| || | ||||| || | ||||| |||| || Sbjct 374291 TGGAGTGACCC-CCCACATGTCTGGTTGCAGAATACCCTTAGACACTGGAGA-CCCTGGA 374234 Query 109967 AAC-TCTCGTACGAC-CCCTCAACCTCGGCCAACTCGGATGAAGCCTCTAGTGCCGCATG 110024 | || |||| ||| ||||| | | || | ||| | || || || ||||| ||||| Sbjct 374233 TAGGTCACGTA-GACACCCTCTTCTTGAGCAAGCTCACAAGATGCTTCGAGTGCAGCATG 374175 Query 110025 ATACATAGTCTCAAAAAT-ATGAGCATTCATGAGGCGAGACTCTTCAC---AGTCGAAGG 110080 ||| || ||||||||||| | || | |||| ||| | ||||| |||| |||| Sbjct 374174 ATAGATGGTCTCAAAAATCAAGA-CGTTCAATTTGCGGG---CTTCAAGCGAGTCAAAGG 374119 Query 110081 GAA-GACCACAAAGAATAAACACATCCGCTAGACCCTGAACACCGAGACCAATGGGGCGA 110139 | | | || ||| ||| | || ||||| ||||| || || | ||||| || ||| Sbjct 374118 GCATGTGCATTTTGAA-AAAGGCGTCTGCTAGGCCCTGGACTCCCAATCCAATTGGACGA 374060 Query 110140 TGCTTCATGTTAGAGCGTCGAGCAGTTTCTACGGGGTAAAAGTTGCGGTCGATGACCCGA 110199 || |||| || | || || |||||| |||| | || || ||| | Sbjct 374059 TGACGTTTGTTGGACTTTTCGGCCTCAGGAACTGGGTAATAGTTTCTATCAATAACCTTA 374000 Query 110200 TTGAGATTCTTCGTCACAGTCTTCGTGATTTCATGGAGTTTGTCGTAATC--------GA 110251 || || ||| || || || ||||| | ||||| | | | |||| || Sbjct 373999 TTCAGGTTCCGAGTTACGACTTTAGTGATCTTGTGGAGCATCTTGAAATCAAATACTGGA 373940 Query 110252 ACGTTTTCGTCTCCT-TATTGACATATTTGGGGAGAGCAATAGACGCAAGATTGCACACA 110310 | | | ||| || | ||||| | | || ||||||||| || | || || ||| Sbjct 373939 ATGCCATTGTCACCAGTCATGACAAAGGTAGGAAGAGCAATACTGGCCAAGTTACAGACA 373880 Query 110311 GAAGTCTCGTCTTTGTCGGTGTATTCCAAAATTTCCGTACACAAGTTGGAACTCTTAATG 110370 | ||| || | | ||||||| | || || ||||| | || || ||| || Sbjct 373879 GCGACCTCATCAGGGCTGCTGTATTCGATGATCTCTGTACAGAGATTACTACACTTGATA 373820 Query 110371 ACACCCAAGTTCTTCTGATTCGATTTGGAGTTGCATGCATCCTTATAGAGCATGTATGGG 110430 |||||||||| |||||||| ||| ||| || ||||| ||||| ||||| || || Sbjct 373819 GTCCCCAAGTTCTGTTGATTCGACTTGCGGTTACAGGCATCTTTATAAAGCATATAGGGC 373760 Query 110431 GTACCAGTTTCCGTCTGTGACTTGAGAATGGCCTTCCATA-CATCGGCGGCGGGGACAGT 110489 || ||||| || || || | || || || || ||| | | || | | | | | ||| Sbjct 373759 GTTCCAGTCTCTGTTTGAGCCTCCAGGATTGCGAACCACAGCTTCTGAGCCTTG-ATAGT 373701 Query 110490 --TGCGTTAGCGAGACCTTCCTCCTCGTACTTGGTGTACAAGTCCTCAAATTCCTGTCCG 110547 | || ||| | |||||| |||||| | | || | | |||||| || | || Sbjct 373700 CTTACG--AGCCCGTCCTTCCAGCTCGTAGGTCATATAGAGTTTCTCAAACTCTTCGCCC 373643 Query 110548 TACACATCAGAAAGACCCTTCGCCTTGTCGGGACAGAAGAGGGACCAATTTCCACCCTCC 110607 | ||||| ||||| ||||| | ||||| ||||| ||||| ||| || Sbjct 373642 CAGACATCTTGTAGACCAGGCGCCTCAGCAGGACAAAAGAGACTCCAATCGCCATTCTGT 373583 Query 110608 TCAACCCTCTTCATGAACAGGTCAGGAATCCACATCGCCGAGAAAAGGTCACGGCAACGA 110667 |||| | ||||||||||||||||| ||||| | || ||| | ||| || |||| Sbjct 373582 TCAATTCGTTTCATGAACAGGTCAGGGATCCAGAGTCCCAGGAACAAGTCTCGAGCACGA 373523 Query 110668 GCCTCTTCATCACCTTGGTTGAGGCGTAGCTCCAAAAAGTCCATGATATCCGAGTGCCAT 110727 | |||||| | ||| || ||| || |||||||| || | | |||| ||||| Sbjct 373522 GTCTCTTCCTTGCCTGTATTCTTGCGAAGGTCCAAAAAATCAAACACGTCCGCATGCCAA 373463 Query 110728 GGTTCGAGATAGACAGCGATGGATCC------CTTACGACGACCCGCCTGGTTAACATAG 110781 ||||| | ||| | || | || ||| ||| | || | || | ||||| Sbjct 373462 GGTTCCAAATACATGGCAAAGGCTCCTGGCCGCTTGTTTCCAC---CTTGATCTACATAT 373406 Query 110782 CGTGCTGTGGCATTGAAGACCCTGAGCATAGGAATAATTCCATCGGATTGACCATTTGTA 110841 | || || || || ||||| | |||||| || | ||| | || |||||||| ||| Sbjct 373405 CTCGCGGTATTGTTAAATACCCTCAACATAGGGATCAATCCGTTAGAATGACCATTCGTA 373346 Query 110842 CCCCTAAT-TCTGGACTTATTGGCACGAATGTCGTGGATATGCATACCAATACCACCCGC 110900 || ||| | || || | ||| || |||| |||| || | ||||| ||||| || Sbjct 373345 CCAGCAATATATGAACCT-GAGGCTCGGATGTTATGGACATTAAGGCCAATCCCACCAGC 373287 Query 110901 CCACTTACTAATTTGTGCACACTCTGTGAGTGTACCATAAATACCATCAATCGAATCTGC 110960 ||| || ||||| |||| ||| | ||||| || || ||||| || | Sbjct 373286 AGTCTTGGAGATCATGGCACAAGACTTGAGGGTATCGTAAATTCCTTCGATCGAGTCATC 373227 Query 110961 CTTGTTGGCAATTAGAAAGCAAGAAGACATCTGAGGACGAGGCGTTCCCGCATTGAAGAG 111020 ||| | | | || || ||| ||||| ||||| | || || || ||||| || || Sbjct 373226 CTTCATAGTCAAGAGGAAACAACTTGACATTTGAGGCCTTGGGGTCCCAGCATTAAACAG 373167 Query 111021 TGTAGGTGTCGCATGAATGAACAGACCTTGGGACATCTTGTTGTATGTGTCGAGTGCGGA 111080 | || | ||||| | || || ||||| | ||| || || || | || Sbjct 373166 GATCGGAGATGCATGCGTAAAATATTTTTCAGACATGTAGTTATAAGTTTCAATGGCCTT 373107 Query 111081 GGGTACATCTTTACCGTGAATACCAATGGCAACTCGCATGAACATATATTGAGGCGTTTC 111140 | | ||| | ||| || || |||| ||||| ||||||| ||| | ||||||| | || Sbjct 373106 GTCGATATCCTCACCATGGATCCCAACAGCAACACGCATGAGCATTTGTTGAGGCCTCTC 373047 Query 111141 GATTAGCTTTCCATCAACACGCTGAAGGTA-ACTCTTCTCTAGGGTCTTGAGACCAAAGT 111199 | || ||| ||||| | | ||||| || | || |||||||| | || |||| Sbjct 373046 TACTATCTTGCCATCGATCTTGAGGAGGTATGATCGT-TCCAGGGTCTTAAAGCCGAAGT 372988 Query 111200 ATCCAAAATCGAAATCACGATC 111221 | ||| | |||||| ||||| Sbjct 372987 AGTTAAAGTTGAAATCGCGATC 372966 >seq47 Length=818200 Score = 185 bits (204), Expect = 1e-41 Identities = 592/904 (65%), Gaps = 21/904 (2%) Strand=Plus/Minus Query 110330 TGTATTCCAAAATTTCCGTACACAAGTTGGAACTCTTAATGACACCCAAGTTCTTCTGAT 110389 ||||||| | ||| || |||||||| || | ||| || || | ||||| |||| Sbjct 305446 TGTATTCAACAATCTCTGTACACAAATTACTGCACTTGATCGTTCCAAGGTTCTGTTGAT 305387 Query 110390 TCGATTTGGAGTTGCATGCATCCTTATAGAGCATGTATGGGGTACCAGTTTCCGTCTGTG 110449 ||||||| |||||| |||||||| || |||||||| || ||||| || || ||||| | Sbjct 305386 TCGATTTACGGTTGCAAGCATCCTTGTAAAGCATGTAAGGCGTACCGGTCTCGGTCTGGG 305327 Query 110450 ACTTGAGAATGGCCTTCCATACATCGGCGGCGGGGACAGT--TGCGTTAGCGAGACCTTC 110507 || ||||| || | ||| | | ||| || || |||| || |||| || Sbjct 305326 CCTCCAGAATAGCATACCAGAGTTTCTGGGCCTTGATGGTCTTGCGG--GCACGACCCTC 305269 Query 110508 CTCCTCGTACTTGGTG-TACAAGTCCTCAAATTCCTGTCCGTACACATCAGAAAGACCCT 110566 ||| || | | || || | ||||| ||||| | || ||||||| ||| || Sbjct 305268 ACGCTCATA-TCGATGATAGAGTTCCTCGAATTCTTCGCCCCACACATCTTGAAGTCCAG 305210 Query 110567 TCGCCTTGTCGGGACAGAAGAGGGACCAATTTCCACCCTCCTCAACCCTCTTCATGAACA 110626 |||| | |||||||| || ||| | | ||||| | | ||||||||| Sbjct 305209 GTGCCTCCGCAGGACAGAACAGACTCCAGTCAGCGTTTTCCTCGATACGTCTCATGAACA 305150 Query 110627 GGTCAGGAATCCACATCGCCGAGAAAAGGTCACGGCAACGAGCCTCTTCATCACCTTGGT 110686 | ||||| ||||| | || |||| | ||||| ||| | ||| || | || || Sbjct 305149 GATCAGGGATCCAGAGAGCATAGAACAAATCACGAGCACGGGTCTCCTCCTTTCCAGTGT 305090 Query 110687 TGAGGCGTAGCTCCAAAAAGTCCATGATATCCGAGTGCCATGGTTCGAGATAGACAGCGA 110746 | ||| || |||| || || | || ||| | ||||| ||||||||||| | || | Sbjct 305089 TCTTGCGAAGATCCAGGAATTCAAAGACATCGGCATGCCAGGGTTCGAGATACATGGCAA 305030 Query 110747 TGGATCCCTTACGACGAC-----CCGCC-TGGTTAACATAGCGTGCTGTGGCATTGAAGA 110800 || || | |||| ||||| || | |||||| || || || ||| ||| Sbjct 305029 AGGCACC---AGGACGCTTGTTGCCGCCCTGATCAACATAACGAGCCGTATTGTTGTAGA 304973 Query 110801 CCCTGAGCATAGGAATAATTCCATCGGATTGACCATTTGTACCCCTAAT-TCTGGACTTA 110859 | | ||||||||||| | |||| ||| | || || || || ||| | || || Sbjct 304972 CACGAAGCATAGGAATCAACCCATTGGAATATCCGTTCGTTCCAGCAATGTATGAACCCG 304913 Query 110860 TTGGCACGAATGTCGTGGATATGCATACCAATACCACCCGCCCACTTACTAATTTGTGCA 110919 | ||||||||| ||| |||| | |||||| || || || || || ||| Sbjct 304912 ACG-CACGAATGTTGTGAATATTAAGACCAATGCCTCCAGCGGTTTTCGAGATCATGGCA 304854 Query 110920 CAC-TCTGTGAGTGTACCATAAATACCATCAATCGAATCTGCCTTGTTGG-CAATTAGAA 110977 || ||| |||| ||| |||| ||||| || |||||||| |||| | | ||| |||| Sbjct 304853 CAGGTCT-TGAGGGTATCATAGATACCCTCGATCGAATCATCCTTCATCGTCAACAAGAA 304795 Query 110978 AGCAAGAAGACATCTGAGGACGAGGCGTTCCCGCATTGAAGAGTGTAGGTGTCGCATGAA 111037 | ||||| ||||||||||| ||||| ||||| ||||||||||| || || | ||||| Sbjct 304794 A-CAAGATGACATCTGAGGGCGAGGTGTTCCAGCATTGAAGAGCGTGGGCGAAGCATGGG 304736 Query 111038 TGAACAGACCTTGGGACATCTTGTTGTATGTGTCGAGTGCGGAGGGTACATCTTTACCGT 111097 |||| || ||||| | ||||| || || | || | |||| | || | Sbjct 304735 TGAAGTATTTTTCAGACATGTAATTGTAGGTCTCAATAGCCTTGTCCACATTATCTCCAT 304676 Query 111098 GAATACCAATGGCAACTCGCATGAACATATATTGAGGCGTTTCGATTAGCTTTCCATCAA 111157 | || || | | || ||||| ||||||| ||||| | || | ||| |||| | Sbjct 304675 GGATCCCGACCGAGACACGCATCAACATATGCTGAGGTCTCTCCGCAACCTTGCCATTGA 304616 Query 111158 CACGCTGAAGGTAACTCTTCTCTAGGGTCTTGAGACCAAAGTATCCAAAATCGAAATCAC 111217 || |||||||| ||| ||||| |||| |||||||| ||| ||| |||| Sbjct 304615 TCCGGAGAAGGTAAGAGCGCTCAAGGGTTTTGAATCCAAAGTAATTGTAATTGAAGTCAC 304556 Query 111218 GATC 111221 |||| Sbjct 304555 GATC 304552 >seq57 Length=574579 Score = 102 bits (112), Expect = 1e-16 Identities = 320/482 (66%), Gaps = 13/482 (3%) Strand=Plus/Minus Query 119222 CTTTTCGAAGAAATTCGTCTTACCATCGAGTGAGATGTTTTCCATAAAGTCAAAAGGATT 119281 ||| || ||||| || ||||| || | || ||||| |||||||||||||||||||| Sbjct 521349 CTTCTCAAAGAAGTTGGTCTTGCCCTGAAGAGAGATCAAGTCCATAAAGTCAAAAGGATT 521290 Query 119282 TTTGGAGTTCCA--GATTGGTGGTTGACCAACTTGTTTCAGAAGACGATCGGAGACATAC 119339 | || | | || | |||| | | | | ||| ||||||||| ||| || Sbjct 521289 CTCAACATTGTAATGTTTTG-GGTTTCCGAGCGCGACCAAGA-GACGATCGGCCACAAAC 521232 Query 119340 TCGATATATTCGGACATCTTTTCCGAATTCATACCTATGAG-ATTACACGGGAGAGCATC 119398 || || |||| |||| | | ||||||||| || | || ||| ||||||||||| Sbjct 521231 TCAATGTATTGTTTCATCAACTTGGCATTCATACCAATCAACATCACA-GGGAGAGCATC 521173 Query 119399 GAGGATGAAGTTCTTCTCGATCTCCACAGCTTCTTTCACGATGG-AGTGAATAGTTTCTG 119457 | | ||| | | |||||| | ||||| ||| | | ||| | | ||| |||| || Sbjct 521172 GGTCAAGAACTCTTGTTCGATCACAACAGCCTCTGTAATGATAGCATTGACACGTTTTTG 521113 Query 119458 TCGATGGTTTGTTTCTCAAGAGTTTAAACAACTCTACGGCAAATTCTTGATGAAGCCCTT 119517 | | | | ||||| | | ||||| ||| || || || || || | Sbjct 521112 GTCAGGACGAGAT-CTCAACAATGAGAACAATAAGCAGGCGAAATCAGTGTGGAGACCCT 521054 Query 119518 CATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCTCTTTTCTTTA 119577 |||| || |||||||| || || |||| || ||||||||||| || | || || | Sbjct 521053 CATCACGCGAGATGAGTTCGTTGGAGAAGGTCAGACCAGGCATGAGACCACGCTTTTTGA 520994 Query 119578 GCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAGGCGAAAGCGA 119637 |||||||||||| | || ||||| ||||||||||| || ||| || || |||| Sbjct 520993 GCCAAAAGATGGAAGCGAATGCGCCAGAGAAGAAGATGCCTTCAACAGCAGCAAAGGCGA 520934 Query 119638 ATAGACGCTCAGCAAAAGGTCGAG-ACTTGTC-GAA--CCACTTGAGAGCCCAGTTGGCC 119693 | ||| ||||| |||||| | | || ||| ||| |||||| | |||||| ||| Sbjct 520933 CCAAACGTTCAGC-AAAGGTTGCGTCCTGGTCAGAAATCCACTTCATGGCCCAGGCAGCC 520875 Query 119694 TT 119695 || Sbjct 520874 TT 520873 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588974984016400