Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lobosporangium_20transversale_20[genbank_20GCA_5F002105155.1_202017- 04-20] 138 sequences; 42,768,949 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq47 150 2e-31 seq57 113 5e-20 seq1 95.1 1e-14 >seq47 Length=818200 Score = 150 bits (166), Expect = 2e-31 Identities = 946/1502 (63%), Gaps = 43/1502 (3%) Strand=Plus/Minus Query 105896 TTGACAATCACAAACTCTCCCGCGAGGGTTCTTCTCAGATAGATGTTCGTCGTGTAGGGT 105955 || |||||| ||||||||||| || || | ||||| || | || ||||| Sbjct 306050 TTCACAATCTGGAACTCTCCCGCAAGCACTCGACGTGTGTAGATATTAGAGGTATAGGGC 305991 Query 105956 TCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCCATC 106015 || || |||||||| ||||| ||| |||| ||| || || || ||||| ||||||| | Sbjct 305990 TCGAAACATTCATTGAAACCCAGGATCTGTGAGGTCGAAGCCGTAGGCATCGGTGCCACC 305931 Query 106016 AAAAGACTGTTACGAAGACCCTTTTCCTTGATGCGTTCCTTGAGAACATCCCAGTCGTAG 106075 || || ||| || | || | | |||||| | || ||| ||||||||| || Sbjct 305930 AAGAGTGAGTTGCGCACTCCATGCTGCTTGATACTGGCCCGGAGCGTATCCCAGTCCCAG 305871 Query 106076 TTGAGCTT--GGTTTCACCTTCCCACATATCAAATTG-AAGCACCCCTTGGGACGTGGGA 106132 || | || | ||| ||||||| || ||| ||| ||||| | | ||| Sbjct 305870 A-GATCGGAGGGCGTTACCC-CCCACATGTCCGGTTGCAAGATTCCCTTCGAAAC-GGGT 305814 Query 106133 GAACCCTCAAATGTCTCATAGGAACCTTGGGCTTCAGCCAATTCACAGCTCGCCTCCAGG 106192 || |||||| | |||||||| | ||| | | | ||||| |||||| | |||| Sbjct 305813 GAGCCCTCATAGGTCTCATAAGTACCCTCCTCCTGAGCCATCTCACAGGATGATTCCAAA 305754 Query 106193 GATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCATCTGAATCA 106252 | || ||||| ||||| || || || | |||| || || || ||| ||| Sbjct 305753 GCCGCATGATAGATGGTCTCGAAAATCTGCTTGTTCAACTGACGTGCCTCGGGTGAGTCA 305694 Query 106253 AATGCGTAGCGGCACAAAATAAATACATCCGCGAGACCTTGAACACCCAAACCAATAGGT 106312 || | ||| | || ||| ||||||| ||||| || ||||||| ||| | ||| Sbjct 305693 AAGGGCATGCGCATCTTGATGAATGCATCCGCTAGACCCTGGACACCCACACCCACAGGA 305634 Query 106313 CTGTGTCGCATATTAGACTTTCGCGCAGTCTC---AACGGGATAAAAATTTCTG-TCAAT 106368 | || ||| | || ||| ||| | | ||| ||| ||||| | || ||| ||||| Sbjct 305633 CGATGACGCTTGTTGGAC---CGCTCTGCCTCTGGAACAGGATAGTAGTT-CTGATCAAT 305578 Query 106369 GACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATGAAGTTTTTCATAATCAAA 106428 | ||| | || ||| || | ||| |||| | ||||| | | | ||| | Sbjct 305577 AATCTTGTTCAAGTTGCGGGTCACGACCTTGGTGACCTGGTGAAGCATCTTGAAGTCATA 305518 Query 106429 AGTGCGAGTCTCTTCATTGACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGC 106488 || || | ||||| | | | || || || || ||||| || || || || Sbjct 305517 CGTCTGATT------ATTGATAAAAGTCGGCAGCGCAATACTGGCCAAGTTACAGACCGC 305464 Query 106489 CGTCTCATCCTTATCTG-TGTACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCG 106547 || || | ||| |||| || | ||| ||||||||||| || | ||| |||| Sbjct 305463 TACTTCGTCTGGA-CTGCTGTATTCAACAATCTCTGTACACAAATTACTGCACTTGATCG 305405 Query 106548 TCCCCAAATTCTTTTGGTTACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCG 106607 | || | |||| ||| || || |||||| ||||||||||| |||||||| |||| Sbjct 305404 TTCCAAGGTTCTGTTGATTCGATTTACGGTTGCAAGCATCCTTGTAAAGCATGTAAGGCG 305345 Query 106608 TCCCCGTCTCCGTCTGTGACTTGAGAATTGCCTTCCACA-CATCGGCGGCTGGTACAATG 106666 | || ||||| ||||| | || ||||| || | ||| | || | | || | ||| Sbjct 305344 TACCGGTCTCGGTCTGGGCCTCCAGAATAGCATACCAGAGTTTCTGGGCCTTG----ATG 305289 Query 106667 GCGTT---GGCCCGTCCCTCCGCCTCGTA-CTTTGTGTAGAGGGCTTCAAACTCCTCACC 106722 | || ||| || ||||| ||| || | || ||||| | || || || || || Sbjct 305288 GTCTTGCGGGCACGACCCTCACGCTCATATCGATG-ATAGAGTTCCTCGAATTCTTCGCC 305230 Query 106723 CACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCCTC 106782 | | | || || || ||||||| | |||||||| ||| ||| | | | || Sbjct 305229 CCACACATCTTGAAGTCCAGGTGCCTCCGCAGGACAGAACAGACTCCAGTCAGCGTTTTC 305170 Query 106783 CTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTCTACACCG 106842 ||| | || ||||||| || || || ||||| || | | || | ||| | | || Sbjct 305169 CTCGATACGTCTCATGAACAGATCAGGGATCCAGAGAGCATAGAACAAATCACGAGCACG 305110 Query 106843 AGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCATGATATCCGCGTGCCA 106902 | ||| || | || ||| || | || ||||| || | || ||| || ||||| Sbjct 305109 GGTCTCCTCCTTTCCAGTGTTCTTGCGAAGATCCAGGAATTCAAAGACATCGGCATGCCA 305050 Query 106903 TGGCTCAAGATAGACTGCGA------TAGATCCCTT-TCGACGCCCAGCTTGATTTACAT 106955 || || ||||| | || | || | ||| | | ||||| |||| |||| Sbjct 305049 GGGTTCGAGATACATGGCAAAGGCACCAGGACGCTTGTTGCCGCCC----TGATCAACAT 304994 Query 106956 AGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACCATTTG 107015 | || || || ||| | || |||||||| ||||| | |||| || | || || | Sbjct 304993 AACGAGCCGTATTGTTGTAGACACGAAGCATAGGAATCAACCCATTGGAATATCCGTTCG 304934 Query 107016 TCCCCCGAATACGAGATTTATTGGCTCTCACATCATGGATGTGCATCCCAATACCCCCAG 107075 | || ||| || || | | | || || | | ||||| || |||| Sbjct 304933 TTCCAGCAATGTATGAACCCGACGCACGAATGTTGTGAATATTAAGACCAATGCCTCCAG 304874 Query 107076 CCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCT 107135 | || ||||| ||||| | | || || |||||||||| | ||| || || | Sbjct 304873 CGGTTTTCGAGATCATGGCACAGGTCTTGAGGGTATCATAGATACCCTCGATCGAATCAT 304814 Query 107136 CCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTGAAGA 107195 |||| | | | | ||| ||| |||||||| || | ||||| ||||||||||||| Sbjct 304813 CCTTCATCGTCAACAAGAAACAAGATGACATCTGAGGGCGAGGTGTTCCAGCATTGAAGA 304754 Query 107196 GGGTTGGTGTTGCGTGAATGAACATACCTTGGGACATCTTGTCGTATGTCTCCAAGACAG 107255 | || || | || || |||| || ||||| | | ||| ||||| | | Sbjct 304753 GCGTGGGCGAAGCATGGGTGAAGTATTTTTCAGACATGTAATTGTAGGTCTCAATAGCCT 304694 Query 107256 AATCAATGTCTTCCCCGTGGATGCCGATGGCCACACGCATAAACATGTATTGGGGTGTTT 107315 || | | || || ||||| |||| | |||||||| ||||| | || ||| | | Sbjct 304693 TGTCCACATTATCTCCATGGATCCCGACCGAGACACGCATCAACATATGCTGAGGTCTCT 304634 Query 107316 CCATGAGGATGCCATCGAGCCGTTGAAGATAGCTCTTCTCAAGGGTTTTGAGACCAAAGT 107375 || | |||||| || ||| |||| || |||||||||||||| ||||||| Sbjct 304633 CCGCAACCTTGCCATTGATCCGGAGAAGGTAAGAGCGCTCAAGGGTTTTGAATCCAAAGT 304574 Query 107376 AA 107377 || Sbjct 304573 AA 304572 >seq57 Length=574579 Score = 113 bits (124), Expect = 5e-20 Identities = 331/500 (66%), Gaps = 30/500 (6%) Strand=Plus/Minus Query 116995 ACTCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATAAAGTCAAAT 117054 || ||||||||||||||||||||||| || | ||| || |||||||||||||| Sbjct 521354 ACACGCTTCTCAAAGAAGTTGGTCTTGCCCTGAAGAGAGATCAAGTCCATAAAGTCAAAA 521295 Query 117055 GGATTCTTCGCGTTCCAAA----TGGGTGGC--ACCCCAACTTGTTTGAGGAGACGATCC 117108 ||||||| | || || ||||| | | | | || | ||||||||| Sbjct 521294 GGATTCTCAACATTGTAATGTTTTGGGTTTCCGAGCGCGACC------AAGAGACGATCG 521241 Query 117109 GACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAG-ATTACATGG 117167 | |||| |||||||||| | |||| || | |||||||| || | || ||| || Sbjct 521240 GCCACAAACTCAATGTATTGTTTCATCAACTTGGCATTCATACCAATCAACATCACA-GG 521182 Query 117168 GAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGGCGTGGAT 117227 ||| || || | |||| ||| || ||| |||| |||||| | | ||| || | || Sbjct 521181 GAGAGCATCGGTCAAGAACTCTTGTTCGATCACAACAGCCTCTGTAATGATAGCATTGAC 521122 Query 117228 A-GTTTCGGTAGTGGGTCTATTACGCAAAGTCTTGAA-GAGCTCCAC-----GGCAAACT 117280 | |||| | |||| | ||| | || || ||| | | ||| || | Sbjct 521121 ACGTTT------TTGGTC-AGGACGAGATCTCAACAATGAGAACAATAAGCAGGCGAAAT 521069 Query 117281 CCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGA 117340 | ||||||||||||||| || || || ||||| || |||||| || || ||||||| Sbjct 521068 CAGTGTGGAGACCCTCATCACGCGAGATGAGTTCGTTGGAGAAGGTCAGACCAGGCATGA 521009 Query 117341 GACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCA 117400 |||| ||||| || | |||| | || | ||||| || ||||||||||| || || | Sbjct 521008 GACCACGCTTTTTGAGCCAAAAGATGGAAGCGAATGCGCCAGAGAAGAAGATGCCTTCAA 520949 Query 117401 CACACGCAAACGCAAAAAGGCGCTCGGCGAAGGAGCGAGACTTTGTGTCAAA-CCATTTC 117459 || ||||| || | | || || || |||| | | | | || ||| ||| ||| Sbjct 520948 CAGCAGCAAAGGCGACCAAACGTTCAGCAAAGG-TTGCGTCCTGGTCAGAAATCCACTTC 520890 Query 117460 ATTGCCCATTTCGCCTTCTT 117479 || ||||| |||||||| Sbjct 520889 ATGGCCCAGGCAGCCTTCTT 520870 >seq1 Length=1854208 Score = 95.1 bits (104), Expect = 1e-14 Identities = 142/200 (71%), Gaps = 5/200 (3%) Strand=Plus/Plus Query 9280 CAAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTG 9339 |||| |||||||| || |||||| ||||| | || || ||||||||||| || | Sbjct 338255 CAAATCCATCCATTTCCACCAAAAGCTGGTTCAATGTACTCTCACGTTCATCATT-GCCG 338313 Query 9340 GCATA----CCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACA 9395 || | || || || || |||||| | |||||||| ||||| || |||| | Sbjct 338314 CCAAAATGGCCTCCTTTACCTCGAGCCTTTCCGATAGCATCAATTTCATCTATAAAGATA 338373 Query 9396 ATACATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACA 9455 ||||| ||| || | |||| | |||| | ||| ||||| | | ||| |||||| Sbjct 338374 ATACAAGGTGCATGCTTCTTGGCGCTCGCAAACAAATCACGAACGCGTGAGGCTCCCACA 338433 Query 9456 CCAACAAACATCTCCACAAA 9475 |||||||||||||||||||| Sbjct 338434 CCAACAAACATCTCCACAAA 338453 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589979782283120