Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lobosporangium_20transversale_20[genbank_20GCA_5F002105155.1_202017- 04-20] 138 sequences; 42,768,949 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq84 165 2e-35 seq53 147 5e-30 seq78 84.2 5e-11 seq62 84.2 5e-11 >seq84 Length=1068272 Score = 165 bits (182), Expect = 2e-35 Identities = 159/204 (78%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||| ||||||||||| || || || |||||||||| || || | |||||||| | ||| Sbjct 721331 GTGGAGAGTGGACTCCTTCTGGATGTTGTAATCGGAGAGGGTACGGCCATCTTCCAACTG 721272 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 ||| || ||||| || || || || |||||||||||||||||||| || |||||||| || Sbjct 721271 CTTGCCGGCGAAAATGAGGCGCTGCTGGTCTGGAGGAATGCCTTCCTTATCTTGAATCTT 721212 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 ||||||||||| || || ||||| || || || |||||||| | ||||| || || Sbjct 721211 CTGCTTGACGTTATCGATCGTGTCAGAGGACTCGACCTCAAGGGTGATGGTCTTGCCGGT 721152 Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140 ||| || || ||||| | ||||| Sbjct 721151 CAAGGTCTTGACGAAAATCTGCAT 721128 Score = 147 bits (162), Expect = 5e-30 Identities = 164/219 (75%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 194922 GAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCT 194981 ||| | ||| || | ||||| || ||||| || || || || || || | ||||| | Sbjct 720890 GAGACGCAAGACCAAATGAAGGGTAGACTCCTTCTGGATGTTATAGTCAGAGAGAGTACG 720831 Query 194982 CCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTC 195041 ||||| || ||||||||||| || ||||| || || || |||||||| ||||| || || Sbjct 720830 GCCATCCTCAAGCTGCTTACCGGCAAAGATGAGACGCTGCTGGTCTGGGGGAATACCCTC 720771 Query 195042 TTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGT 195101 |||||||| || || ||||||||||| ||||||||||| || || || |||||||| Sbjct 720770 CTTGTCTTGGATCTTCTGCTTGACGTTGTCAATGGTGTCGGAGGACTCGACCTCAAGGGT 720711 Query 195102 AACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 | ||||| || || | ||| || ||||| | ||||| Sbjct 720710 GATGGTCTTGCCGGTGAGAGTCTTAACGAAGATCTGCAT 720672 Score = 143 bits (158), Expect = 6e-29 Identities = 163/219 (74%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 194922 GAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCT 194981 ||| | ||| || | |||||||| ||||| || || || || || || | ||| || | Sbjct 721118 GAGACGCAAGACCAAATGAAGAGTAGACTCCTTCTGGATGTTATAGTCAGAAAGGGTACG 721059 Query 194982 CCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTC 195041 ||||| || |||||||| || || ||||| || || || |||||||| ||||| || || Sbjct 721058 GCCATCCTCAAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCTGGGGGAATACCCTC 720999 Query 195042 TTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGT 195101 ||||||||| || || |||||||| || |||||||| || || || || || ||||| Sbjct 720998 TTTGTCTTGGATCTTCTGCTTGACATTGTCAATGGTATCAGAGGACTCGACCTCGAGGGT 720939 Query 195102 AACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 | ||||| || ||||| || || ||||| | ||||| Sbjct 720938 GATGGTCTTGCCGGTCAAGGTCTTGACGAAAATCTGCAT 720900 >seq53 Length=681236 Score = 147 bits (162), Expect = 5e-30 Identities = 155/204 (76%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 |||||| || ||||| ||||| |||||||| || | || || | ||||| || ||||| Sbjct 252151 GTGAAGGGTAGACTCCTTTTGGATATTGTAGTCAGAGAGCGTGCGACCATCCTCAAGCTG 252210 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 || || ||||| ||||| || || |||||||||||||| ||||| ||||| ||||| || Sbjct 252211 TTTTCCGGCGAAAATAAGACGCTGCTGGTCTGGAGGAATACCTTCCTTGTCCTGAATCTT 252270 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 ||||||||||| || |||||||| ||| || ||||| | || | ||||| || || Sbjct 252271 CTGCTTGACGTTGTCGATGGTGTCGGAAGACTCAACTTCCAAAGTGATTGTCTTGCCAGT 252330 Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140 | || || ||||| | ||||| Sbjct 252331 GAGTGTCTTGACGAAAATCTGCAT 252354 Score = 147 bits (162), Expect = 5e-30 Identities = 155/204 (76%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 |||||| || ||||| ||||| |||||||| || | || || | |||||||| ||||| Sbjct 252379 GTGAAGGGTAGACTCCTTTTGGATATTGTAGTCAGAGAGCGTACGACCATCTTCAAGCTG 252438 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 || || |||||||| || || || |||||||| ||||| ||||| ||||| ||||| || Sbjct 252439 TTTTCCGGCGAAGATGAGGCGCTGCTGGTCTGGGGGAATACCTTCCTTGTCCTGAATCTT 252498 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 ||||||||||| || |||||||| || || ||||| | || | || || || || Sbjct 252499 CTGCTTGACGTTATCGATGGTGTCGGAGGACTCAACTTCCAAAGTGATAGTTTTACCGGT 252558 Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140 ||||| || ||||| | ||||| Sbjct 252559 TAAAGTCTTGACGAAAATCTGCAT 252582 Score = 147 bits (162), Expect = 5e-30 Identities = 155/204 (76%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 |||||| || ||||| ||||| |||||||| || | || || | |||||||| ||||| Sbjct 252835 GTGAAGGGTAGACTCCTTTTGGATATTGTAGTCAGAGAGCGTACGACCATCTTCAAGCTG 252894 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 || || |||||||| || || || |||||||| ||||| ||||| ||||| ||||| || Sbjct 252895 TTTTCCGGCGAAGATGAGGCGCTGCTGGTCTGGGGGAATACCTTCCTTGTCCTGAATCTT 252954 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 ||||||||||| || |||||||| || || ||||| | || | || || || || Sbjct 252955 CTGCTTGACGTTATCGATGGTGTCGGAGGACTCAACTTCCAAAGTGATAGTTTTACCGGT 253014 Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140 ||||| || ||||| | ||||| Sbjct 253015 TAAAGTCTTGACGAAAATCTGCAT 253038 Score = 145 bits (160), Expect = 2e-29 Identities = 158/210 (75%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 ||| ||||| || ||||| || || |||||||| || || | || || | ||||| || Sbjct 252601 AACTAGGTGGAGGGTGGATTCCTTCTGAATATTATAGTCAGAGAGCGTGCGGCCATCCTC 252660 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 ||||| || || ||||| ||||| || || |||||||||||||| ||||| ||||| || Sbjct 252661 AAGCTGTTTTCCGGCGAAAATAAGACGCTGCTGGTCTGGAGGAATACCTTCCTTGTCCTG 252720 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110 ||| || ||||||||||| || |||||||| ||| || ||||| | || | ||||| Sbjct 252721 AATCTTCTGCTTGACGTTGTCGATGGTGTCGGAAGACTCAACTTCCAAAGTGATTGTCTT 252780 Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | || || ||||| | ||||| Sbjct 252781 GCCAGTGAGTGTCTTGACGAAAATCTGCAT 252810 Score = 138 bits (152), Expect = 3e-27 Identities = 154/206 (75%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 |||||| || ||||| ||||||||||| ||||||| ||| || | |||||||| || || Sbjct 253063 GTGAAGGGTCGACTCCTTTTGAATATTATAATCGGAAAGCGTACGTCCATCTTCAAGTTG 253122 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 ||| || || ||||| || || || |||||||||||||| ||||| ||||| || ||||| Sbjct 253123 CTTTCCAGCAAAGATGAGACGCTGCTGGTCTGGAGGAATACCTTCCTTGTCCTGGATTTT 253182 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 || || || || || || ||||| || || || || | |||| ||||| || || Sbjct 253183 CTGTTTAACATTGTCGATAGTGTCGGAGGACTCTACCTCCAAAGTAATGGTCTTGCCGGT 253242 Query 195117 CAAAGTTTTTACGAACACTTGCATTT 195142 | || || || || | ||||||| Sbjct 253243 GAGTGTCTTGACAAAAATCTGCATTT 253268 >seq78 Length=372185 Score = 84.2 bits (92), Expect = 5e-11 Identities = 76/96 (79%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 194944 GTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCT 195003 || ||||| ||||| || ||||| || | |||||| | ||||| || ||||||||||| Sbjct 198843 GTTGACTCCTTTTGGATGTTGTAGTCAGAAAGAGTACGACCATCCTCAAGCTGCTTACCA 198784 Query 195004 GCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCT 195039 |||||||| | || || |||||||| ||||| ||| Sbjct 198783 GCGAAGATCAAACGCTGCTGGTCTGGGGGAATACCT 198748 >seq62 Length=1732855 Score = 84.2 bits (92), Expect = 5e-11 Identities = 82/106 (77%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 195037 CCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCA 195096 || || ||||| || || || ||||||||||| ||||||||||| ||| ||||| ||| Sbjct 1321481 CCCTCCTTGTCCTGGATCTTCTGCTTGACGTTGTCAATGGTGTCGGAAGACTCCACCTCA 1321540 Query 195097 AGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATTT 195142 ||||| | |||||||| || | || || ||||| | ||||||| Sbjct 1321541 AGGGTGATAGTCTTTCCAGTAAGGGTCTTAACGAAAATCTGCATTT 1321586 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109479638297846