Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lobosporangium_20transversale_20[genbank_20GCA_5F002105155.1_202017- 04-20] 138 sequences; 42,768,949 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq49 237 2e-57 seq47 111 2e-19 seq57 102 9e-17 >seq49 Length=746914 Score = 237 bits (262), Expect = 2e-57 Identities = 619/940 (66%), Gaps = 4/940 (0%) Strand=Plus/Minus Query 47862 ATAACAAACCTATTAAGTGCTATAGATGCTAGATTACATACAGCTACCTCATTTGGATTA 47921 || ||||| || ||| || ||| || | ||||| ||||| ||||||| || | Sbjct 373921 ATGACAAAGGTAGGAAGAGCAATACTGGCCAAGTTACAGACAGCGACCTCATCAGGGCTG 373862 Query 47922 GTATATTGTATTATTTCAGCACATAGATTACCACATTTGATAGTACCCAAATTTTGATGA 47981 | |||| || || || | ||| ||||||| ||| |||||||| ||||| || || ||| Sbjct 373861 CTGTATTCGATGATCTCTGTACAGAGATTACTACACTTGATAGTCCCCAAGTTCTGTTGA 373802 Query 47982 TTATTNNNNTTGTTACATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTGA 48041 || |||||| || || || ||||||||| | || |||||||| ||| | ||| Sbjct 373801 TTCGACTTGCGGTTACAGGCATCTTTATAAAGCATATAGGGCGTTCCAGTCTCTGTTTGA 373742 Query 48042 GATTCAATGATAGATTTCCAAACAGTCCTAGCCTTTATAACAGCTCTAGCTTTATTATCA 48101 | || | ||| | ||| | || |||||| ||| | ||| || Sbjct 373741 GCCTCCAGGATTGCGAACCACAGCTTCTGAGCCTTGATAGTCTTACGAGCCCGTCCTTCC 373682 Query 48102 TGTTCGTATTTAGTATATAACTTCTCAAATTCATCCCCATACACATTATCTAACCCAGGA 48161 | ||||| | |||| | |||||||| || || || | |||| | || ||||| Sbjct 373681 AGCTCGTAGGTCATATAGAGTTTCTCAAACTCTTCGCCCCAGACATCTTGTAGACCAGGC 373622 Query 48162 CATTCATTAGGACACATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATA 48221 ||| |||||| | | |||||| ||| | || | || |||| || | Sbjct 373621 GCCTCAGCAGGACAAAAGAGACTCCAATCGCCATTCTGTTCAATTCGTTTCATGAACAGG 373562 Query 48222 TCTGGTATCCAAAGAGCTATAAATAAATCCCTAGTTCTTAGT-TCTTCATTGCCACTATT 48280 || || ||||| || | | || || || | || | ||| ||||| ||||| |||| Sbjct 373561 TCAGGGATCCAGAGTCCCAGGAACAAGTCTCGAGCACG-AGTCTCTTCCTTGCCTGTATT 373503 Query 48281 CCTTTTAAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCCAT 48340 | | ||| || | ||| || | | || |||||||| ||||| ||||| || || | Sbjct 373502 CTTGCGAAGGTCCAAAAAATCAAACACGTCCGCATGCCAAGGTTCCAAATACATGGCAAA 373443 Query 48341 TACACCTGGTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCT 48400 | ||||| || || || || |||||||||| |||||| || ||||||||| | || || Sbjct 373442 GGCTCCTGGCCGCTTGTTTCCACCTTGATCTACATATCTCGCGGTATTGTTAAATACCCT 373383 Query 48401 TAACATTGGGA-CAATACCATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAG 48459 ||||| |||| |||| || || || |||||| || || | |||||| || | Sbjct 373382 CAACATAGGGATCAAT-CCGTTAGAATGACCATTCGTACCAGCAATATATGAACCTGAGG 373324 Query 48460 CTCTTATATTACTAATTGAAATACCTATACCACCTGCCATTTTAGATATTAGAGCACACC 48519 ||| || ||| | || || || ||||| || | || || || | ||||| Sbjct 373323 CTCGGATGTTATGGACATTAAGGCCAATCCCACCAGCAGTCTTGGAGATCATGGCACAAG 373264 Query 48520 GTTTAAGGGTATCATAAATTCCTTCTATACTATCATCTATCATATTTAATAGAAAACAAC 48579 || |||||||| ||||||||||| || ||||| ||||| | || || ||||||| Sbjct 373263 ACTTGAGGGTATCGTAAATTCCTTCGATCGAGTCATCCTTCATAGTCAAGAGGAAACAAC 373204 Query 48580 TAGACATTTGCGGATGACAAGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACC 48639 | |||||||| || || || | |||||| | | ||||||||||| |||| Sbjct 373203 TTGACATTTGAGGCCTTGGGGTCCCAGCATTAAACAGGATCGGAGATGCATGCGTAAAAT 373144 Query 48640 ATTTCTCTGATAACAATTTATATGTTTCAATAACAGAATCTATATCCCATTGATGTATAC 48699 |||| || || | | ||||| |||||||| | || |||||| ||| || | Sbjct 373143 ATTTTTCAGACATGTAGTTATAAGTTTCAATGGCCTTGTCGATATCCTCACCATGGATCC 373084 Query 48700 CTATAGATACACGCATTAACATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCA 48759 | | || |||||||| | ||| | |||||| || || || || ||| || || || | Sbjct 373083 CAACAGCAACACGCATGAGCATTTGTTGAGGCCTCTCTACTATCTTGCCATCGATCTTGA 373024 Query 48760 AAAGATATGATTTTTCCAATGTTTTAAAACCAAAATAGTT 48799 || |||||| ||||| || ||||| || || ||||| Sbjct 373023 GGAGGTATGATCGTTCCAGGGTCTTAAAGCCGAAGTAGTT 372984 >seq47 Length=818200 Score = 111 bits (122), Expect = 2e-19 Identities = 384/594 (65%), Gaps = 4/594 (1%) Strand=Plus/Minus Query 48211 TCATAAATATATCTGGTATCCAAAGAGCTATA-AATAAATCCCTAGTTCTTAGTTCTTCA 48269 |||| || | ||| || ||||| ||||| ||| || ||||| | || | || || Sbjct 305158 TCATGAACAGATCAGGGATCCAGAGAGC-ATAGAACAAATCACGAGCACGGGTCTCCTCC 305100 Query 48270 TTGCCACTATTCCTTTTAAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAA 48329 || ||| | ||| | ||| || || || || | | ||| |||||||| ||||| | | Sbjct 305099 TTTCCAGTGTTCTTGCGAAGATCCAGGAATTCAAAGACATCGGCATGCCAGGGTTCGAGA 305040 Query 48330 TATATTGCCATTACACCTGGTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTG 48389 || || || | |||| || || || || || || ||||| | ||| | || |||||| Sbjct 305039 TACATGGCAAAGGCACCAGGACGCTTGTTGCCGCCCTGATCAACATAACGAGCCGTATTG 304980 Query 48390 TTATAAACTCTTAACATTGGGACAATACCATTTGATATA-CCATTGGTTCCCGAAATATA 48448 || || || | | ||| || | | ||||| || ||| || || ||||| | ||| || Sbjct 304979 TTGTAGACACGAAGCATAGGAATCAACCCATTGGA-ATATCCGTTCGTTCCAGCAATGTA 304921 Query 48449 ACTTCCACTAGCTCTTATATTACTAATTGAAATACCTATACCACCTGCCATTTTAGATAT 48508 || || | || || ||| || ||| || || || || |||| || || Sbjct 304920 TGAACCCGACGCACGAATGTTGTGAATATTAAGACCAATGCCTCCAGCGGTTTTCGAGAT 304861 Query 48509 TAGAGCACACCGTTTAAGGGTATCATAAATTCCTTCTATACTATCATCTATCATATTTAA 48568 | ||||| || ||||||||||| || || || || |||||| |||| | || Sbjct 304860 CATGGCACAGGTCTTGAGGGTATCATAGATACCCTCGATCGAATCATCCTTCATCGTCAA 304801 Query 48569 TAGAAAACAACTAGACATTTGCGGATGACAAGTTCCTGAATTAAATAATGTTGGAGATGC 48628 | |||||| ||||| || || || ||||| | ||| || | || || || || Sbjct 304800 CAAGAAACAAGATGACATCTGAGGGCGAGGTGTTCCAGCATTGAAGAGCGTGGGCGAAGC 304741 Query 48629 ATGAATAAACCATTTCTCTGATAACAATTTATATGTTTCAATAACAGAATCTATATCCCA 48688 ||| | || |||| || || | | || || || |||||| | || | || Sbjct 304740 ATGGGTGAAGTATTTTTCAGACATGTAATTGTAGGTCTCAATAGCCTTGTCCACATTATC 304681 Query 48689 TTGATGTATACCTATAGATACACGCATTAACATATATTGAGGTCTTTCAACAATTTTGTT 48748 | ||| || || | || |||||||| ||||||| |||||||| || ||| ||| Sbjct 304680 TCCATGGATCCCGACCGAGACACGCATCAACATATGCTGAGGTCTCTCCGCAACCTTGCC 304621 Query 48749 ATTTATTTTCAAAAGATATGATTTTTCCAATGTTTTAAAACCAAAATAGTTGTA 48802 ||| || | ||| || || || | ||||| || ||||| || ||||| Sbjct 304620 ATTGATCCGGAGAAGGTAAGAGCGCTCAAGGGTTTTGAATCCAAAGTAATTGTA 304567 >seq57 Length=574579 Score = 102 bits (112), Expect = 9e-17 Identities = 198/290 (68%), Gaps = 3/290 (1%) Strand=Plus/Minus Query 19225 TCTTTAACATATGCATCTATCAATAAACTGTACATTTCTGAATGAATATTTTCTATAGCC 19284 ||||| ||||| | || || | | | |||||| |||||||||| ||| || || Sbjct 520475 TCTTTGACATAGGTGTCAATGAGAAGAGAGTACATCTCTGAATGAACATTCTCAATCATG 520416 Query 19285 ATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTACTTCACTACAAAATCTTTCG 19344 || || || || ||||| ||||||||||| | ||||| || ||| | | || | ||| Sbjct 520415 ATTTGGAAGCCATAAAAGCATCTTGCTTCAGGGATCTGGACCTCATTCGAGAAACGTTCC 520356 Query 19345 ACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAAATGCTAATACATGTTTAATA 19404 | | || ||||| || || ||||| ||||| ||||| || || | | ||| || Sbjct 520355 AAGAGGTTCTCATTCACAATACCATCGCTAGCAGCAAAGAAGGCCAGGATGTGTGAAACG 520296 Query 19405 AAATGTTTTTCATCTGAGGTTAA--TGTATT-CCAATCATTAATATCTTTAGATAAATCT 19461 || | ||||||| || || || || ||| |||| || || || || | |||| Sbjct 520295 AAGAATCGTTCATCTTCTGTCAAACGGTTTTCCCAGTCATGCATGTCCTTGGAAAGATCT 520236 Query 19462 ACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTATACATGTTCCA 19511 ||||| ||| | ||||| || || || || || || || ||||| | ||| Sbjct 520235 ACTTCCTCAGCAGTCCAGAAGGATGCTTCAGCCTTCTTGTACATCTGCCA 520186 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562107830362320